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At least 1,261 records · Page 70

Low-dimensional representations of the three component loop braid group

Motivated by physical and topological applications, we study representations of the group LB 3 of motions of 3 unlinked oriented circles in R 3 . Our point of view is to regard the three strand braid group B 3 as a subgroup of LB 3 and study the problem of extending B 3 representations. We introduce the notion of a standard extension and characterize B 3 representations admitting such an extension. In particular we show, using a classification result of Tuba and Wenzl [Pacific J. Math. 197, 491–510 (2001)], that every irreducible B 3 representation of dimension at most 5 has a (standard) extension. We show that this result is sharp by exhibiting an irreducible 6-dimensional B 3 representation that has no extensions (standard or otherwise). Here, we obtain complete classifications of (1) irreducible 2-dimensional LB 3 representations, (2) extensions of irreducible 3-dimensional B 3 representations, and (3) irreducible LB 3 representations whose restriction to B 3 has abelian image.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Downfolding of many-body Hamiltonians using active-space models: Extension of the sub-system embedding sub-algebras approach to unitary coupled cluster formalisms

Here, we discuss the extension of the recently introduced subsystem embedding subalgebra coupled cluster (SES-CC) formalism to unitary CC formalisms. In analogy to the standard single-reference SES-CC formalism, its unitary CC extension allows one to include the dynamical (outside the active space) correlation effects in an SES induced complete active space (CAS) effective Hamiltonian. In contrast to the standard single-reference SES-CC theory, the unitary CC approach results in a Hermitian form of the effective Hamiltonian. Additionally, for the double unitary CC (DUCC) formalism, the corresponding CAS eigenvalue problem provides a rigorous separation of external cluster amplitudes that describe dynamical correlation effects—used to define the effective Hamiltonian—from those corresponding to the internal (inside the active space) excitations that define the components of eigenvectors associated with the energy of the entire system. The proposed formalism can be viewed as an efficient way of downfolding many-electron Hamiltonian to the low-energy model represented by a particular choice of CAS. In principle, this technique can be extended to any type of CAS representing an arbitrary energy window of a quantum system. The Hermitian character of low-dimensional effective Hamiltonians makes them an ideal target for several types of full configuration interaction type eigensolvers. As an example, we also discuss the algebraic form of the perturbative expansions of the effective DUCC Hamiltonians corresponding to composite unitary CC theories and discuss possible algorithms for hybrid classical and quantum computing. Given growing interest in quantum computing, we provide energies for H 2 and Be systems obtained with the quantum phase estimator algorithm available in the Quantum Development Kit for the approximate DUCC Hamiltonians.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Three-dimensional electron temperature measurement of inertial confinement fusion hotspots using x-ray emission tomography

Here we present a novel approach to reconstruct three-dimensional (3D) electron temperature distributions of inertially confined fusion plasma hotspots at the National Ignition Facility. Using very limited number of two-dimensional (2D) x-ray imaging lines of sight, we perform 3D reconstructions of x-ray emission distributions from different x-ray energy channels ranging from 20 to 30 keV. 2D time-integrated x-ray images are processed using the algebraic reconstruction technique to reconstruct a 3D hotspot x-ray emission distribution that is self-consistent with the input images. 3D electron temperatures are computed using the energy channel ratios. We demonstrate the high accuracy and applicability of this method with different complex hotspot geometries in both synthetic and experimental results.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

A review on recent machine learning applications for imaging mass spectrometry studies

Imaging mass spectrometry (IMS) is a powerful analytical technique widely used in biology, chemistry, and materials science fields that continue to expand. IMS provides a qualitative compositional analysis and spatial mapping with high chemical specificity. The spatial mapping information can be 2D or 3D depending on the analysis technique employed. Due to the combination of complex mass spectra coupled with spatial information, large high-dimensional datasets (hyperspectral) are often produced. Therefore, the use of automated computational methods for an exploratory analysis is highly beneficial. The fast-paced development of artificial intelligence (AI) and machine learning (ML) tools has received significant attention in recent years. These tools, in principle, can enable the unification of data collection and analysis into a single pipeline to make sampling and analysis decisions on the go. There are various ML approaches that have been applied to IMS data over the last decade. Here, in this review, we discuss recent examples of the common unsupervised (principal component analysis, non-negative matrix factorization, k-means clustering, uniform manifold approximation and projection), supervised (random forest, logistic regression, XGboost, support vector machine), and other methods applied to various IMS datasets in the past five years. The information from this review will be useful for specialists from both IMS and ML fields since it summarizes current and representative studies of computational ML-based exploratory methods for IMS.

47 OTHER INSTRUMENTATION↗

Improving signal strength in serial crystallography with DIALS geometry refinement

The DIALS diffraction-modeling software package has been applied to serial crystallography data. Diffraction modeling is an exercise in determining the experimental parameters, such as incident beam wavelength, crystal unit cell and orientation, and detector geometry, that are most consistent with the observed positions of Bragg spots. These parameters can be refined by nonlinear least-squares fitting. In previous work, it has been challenging to refine both the positions of the sensors (metrology) on multipanel imaging detectors such as the CSPAD and the orientations of all of the crystals studied. Since the optimal models for metrology and crystal orientation are interdependent, alternate cycles of panel refinement and crystal refinement have been required. To simplify the process, a sparse linear algebra technique for solving the normal equations was implemented, allowing the detector panels to be refined simultaneously against the diffraction from thousands of crystals with excellent computational performance. Separately, it is shown how to refine the metrology of a second CSPAD detector, positioned at a distance of 2.5 m from the crystal, used for recording low-angle reflections. With the ability to jointly refine the detector position against the ensemble of all crystals used for structure determination, it is shown that ensemble refinement greatly reduces the apparent nonisomorphism that is often observed in the unit-cell distributions from still-shot serial crystallography. In addition, it is shown that batching the images by timestamp and re-refining the detector position can realistically model small, time-dependent variations in detector position relative to the sample, and thereby improve the integrated structure-factor intensity signal and heavy-atom anomalous peak heights.

36 MATERIALS SCIENCE↗

GP Cosmology Surrogate v1.0

GP Cosmology Surrogate is a Python library for building and training a generalized multi-output Gaussian process (GP) framework of @takhtaganov2021cosmic. In this approach, the surrogate is constructed sequentially, guided by a Bayesian optimization acquisition function that targets reduction of emulation error in the regions most consistent with the observational data. This adaptive design concentrates computational resources where they have the greatest impact on inference accuracy. The library supports efficient training for separable GP kernels, which allows the use of Kronecker algebra to handle high-dimensional input spaces and large numbers of correlated outputs. This makes it well suited for applications such as modeling cosmological power spectra, large-scale physical simulations, and multi-output hyperparameter tuning. By combining scalable multi-output GP modeling with data-driven adaptive sampling, GPsurrogate enables parameter inference and optimization with substantially fewer simulations than conventional space-filling designs.

Lukic, Zarija [Lawrence Berkeley National Laborato↗

Robustness of linear quadratic state feedback designs in the presence of system uncertainty

The paper deals with the problem of expressing the robustness (stability) property of a linear quadratic state feedback (LQSF) design quantitatively in terms of bounds on the perturbations (modeling errors or parameter variations) in the system matrices so that the closed-loop system remains stable. Nonlinear time-varying and linear time-invariant perturbations are considered. The only computation required in obtaining a measure of the robustness of an LQSF design is to determine the eigenvalues of two symmetric matrices determined when solving the algebraic Riccati equation corresponding to the LQSF design problem. Results are applied to a complex dynamic system consisting of the flare control of a STOL aircraft. The design of the flare control is formulated as an LQSF tracking problem.

Patel, R. V.↗

Minimizing inner product data dependencies in conjugate gradient iteration

The amount of concurrency available in conjugate gradient iteration is limited by the summations required in the inner product computations. The inner product of two vectors of length N requires time c log(N), if N or more processors are available. This paper describes an algebraic restructuring of the conjugate gradient algorithm which minimizes data dependencies due to inner product calculations. After an initial start up, the new algorithm can perform a conjugate gradient iteration in time c*log(log(N)).

Vanrosendale, J.↗

Progress on a Taylor weak statement finite element algorithm for high-speed aerodynamic flows

A new finite element numerical Computational Fluid Dynamics (CFD) algorithm has matured to the point of efficiently solving two-dimensional high speed real-gas compressible flow problems in generalized coordinates on modern vector computer systems. The algorithm employs a Taylor Weak Statement classical Galerkin formulation, a variably implicit Newton iteration, and a tensor matrix product factorization of the linear algebra Jacobian under a generalized coordinate transformation. Allowing for a general two-dimensional conservation law system, the algorithm has been exercised on the Euler and laminar forms of the Navier-Stokes equations. Real-gas fluid properties are admitted, and numerical results verify solution accuracy, efficiency, and stability over a range of test problem parameters.

Baker, A. J.↗

A survey on the structured singular value

The structured singular value, U, is an important linear algebra tool to study a class of matrix perturbation problems. It is useful for analyzing the robustness of stability and performance of uncertain, (nominally) linear systems. Computation of (M) is difficult, and usually, upper and lower bounds are all that can be reliably computed. Upper bounds give conservative estimates of the sizes of allowable perturbations. The maximum singular value of a matrix M is an upper bound for (M). As an upper bound, it can be improved by finding a transformations to the data (i.e. M) which do not change the structured singular value, but do reduce the maximum singular value. Typically, upper bound algorithms involve searches over sets of transformations to yield the tightest bound. Lower bound algorithms are intelligent searches for minimum-norm solutions to multivariable polynomial equations, and are based on various optimality conditions that hold at the global (and, unfortunately, some local) minima. The current methods to compute both of these types of bounds are reviewed. Theoretical justification and extensive numerical experience with the various algorithms are covered.

Packard, Andy↗

A turbulence model for iced airfoils and its validation

A turbulence model based on the extension of the algebraic eddy viscosity formulation of Cebeci and Smith developed for two dimensional flows over smooth and rough surfaces is described for iced airfoils and validated for computed ice shapes obtained for a range of total temperatures varying from 28 to -15 F. The validation is made with an interactive boundary layer method which uses a panel method to compute the inviscid flow and an inverse finite difference boundary layer method to compute the viscous flow. The interaction between inviscid and viscous flows is established by the use of the Hilbert integral. The calculated drag coefficients compare well with recent experimental data taken at the NASA-Lewis Icing Research Tunnel (IRT) and show that, in general, the drag increase due to ice accretion can be predicted well and efficiently.

Shin, Jaiwon↗

Finite element solution of optimal control problems with state-control inequality constraints

It is demonstrated that the weak Hamiltonian finite-element formulation is amenable to the solution of optimal control problems with inequality constraints which are functions of both state and control variables. Difficult problems can be treated on account of the ease with which algebraic equations can be generated before having to specify the problem. These equations yield very accurate solutions. Owing to the sparse structure of the resulting Jacobian, computer solutions can be obtained quickly when the sparsity is exploited.

Bless, Robert R.↗

Comparison of Predicted and Measured Turbine Vane Rough Surface Heat Transfer

The proposed paper compares predicted turbine vane heat transfer for a rough surface over a wide range of test conditions with experimental data. Predictions were made for the entire vane surface. However, measurements were made only over the suction surface of the vane, and the leading edge region of the pressure surface. Comparisons are shown for a wide range of test conditions. Inlet pressures varied between 3 and 15 psia, and exit Mach numbers ranged between 0.3 and 0.9. Thus, while a single roughened vane was used for the tests, the effective rougness,(k(sup +)), varied by more than a factor of ten. Results were obtained for freestream turbulence levels of 1 and 10%. Heat transfer predictions were obtained using the Navier-Stokes computer code RVCQ3D. Two turbulence models, suitable for rough surface analysis, are incorporated in this code. The Cebeci-Chang roughness model is part of the algebraic turbulence model. The k-omega turbulence model accounts for the effect of roughness in the application of the boundary condition. Roughness causes turbulent flow over the vane surface. Even after accounting for transition, surface roughness significantly increased heat transfer compared to a smooth surface. The k-omega results agreed better with the data than the Cebeci-Chang model. However, the low Reynolds number k-omega model did not accurately account for roughness when the freestream turbulence level was low. The high Reynolds number version of this model was more suitable when the freestream turbulence was low.

Boyle, R. J.↗

Unifying thermochemistry concepts in computational heterogeneous catalysis

Thermophysical properties of adsorbates and gas-phase species define the free energy landscape of heterogeneously catalyzed processes and are pivotal for an atomistic understanding of the catalyst performance. These thermophysical properties, such as the free energy or the enthalpy, are typically derived from density functional theory (DFT) calculations. Enthalpies are species-interdependent properties that are only meaningful when referenced to other species. The widespread use of DFT has led to a proliferation of new energetic data in the literature and databases. However, there is a lack of consistency in how DFT data is referenced and how the associated enthalpies or free energies are stored and reported, leading to challenges in reproducing or utilizing the results of prior work. Additionally, DFT suffers from exchange–correlation errors that often require corrections to align the data with other global thermochemical networks, which are not always clearly documented or explained. In this review, we introduce a set of consistent terminology and definitions, review existing approaches, and unify the techniques using the framework of linear algebra. This set of terminology and tools facilitates the correction and alignment of energies between different data formats and sources, promoting the sharing and reuse of ab initio data. Standardization of thermochemistry concepts in computational heterogeneous catalysis reduces computational cost and enhances fundamental understanding of catalytic processes, which will accelerate the computational design of optimally performing catalysts.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Conference on Complex Turbulent Flows: Comparison of Computation and Experiment, Stanford University, Stanford, CA, September 14-18, 1981, Proceedings. Volume 2 - Taxonomies, reporters' summaries, evaluation, and conclusions

Computational techniques for simulating turbulent flows were explored, together with the results of experimental investigations. Particular attention was devoted to the possibility of defining a universal closure model, applicable for all turbulence situations; however, conclusions were drawn that zonal models, describing localized structures, were the most promising techniques to date. The taxonomy of turbulent flows was summarized, as were algebraic, differential, integral, and partial differential methods for numerical depiction of turbulent flows. Numerous comparisons of theoretically predicted and experimentally obtained data for wall pressure distributions, velocity profiles, turbulent kinetic energy profiles, Reynolds shear stress profiles, and flows around transonic airfoils were presented. Simplifying techniques for reducing the necessary computational time for modeling complex flowfields were surveyed, together with the industrial requirements and applications of computational fluid dynamics techniques.

Kline, S. J.↗

Numerical Method for Fractional Advection-Diffusion Equation with Heredity

We propose a method of construction of difference schemes for fractional partial differential equations with delay in time. For the fractional equation with two-sided diffusion, fractional transfer in time, and a functional aftereffect, we construct an implicit difference scheme. We use the shifted Grünwald–Letnikov formulas for the approximation of fractional derivatives with respect to spatial variables and the L1-algorithm for the approximation of fractional derivatives in time. Also we use piecewise constant interpolation and extrapolation by extending the discrete prehistory of the model in time. The algorithm is a fractional analog of a purely implicit method; on each time step, it is reduced to the solution of linear algebraic systems. We prove the stability of the method and find its order of convergence.

97 MATHEMATICS AND COMPUTING↗

LaRIS: Targeting Portability and Productivity for LAPACK Codes on Extreme Heterogeneous Systems by Using IRIS

In keeping with the trend of heterogeneity in high-performance computing, hardware manufacturers and vendors are developing new architectures and associated software stacks (e.g., libraries) to harness the best possible performance from commonly used kernels (e.g., linear algebra kernels). However, kernels tuned for one architecture are not portable to others. Moreover, the coexistence of different architectures in a single node makes orchestration difficult. To address these challenges, we introduce LaRIS, a portable framework for LAPACK functionalities. LaRIS ensures a separation between linear algebra algorithms and vendor-library kernels by using the IRIS run time and IRIS-BLAS library. Such abstraction at the algorithm level makes the implementation completely agnostic to the vendor library and architecture. LaRIS uses the IRIS run time to dynamically select the vendor-library kernel and suitable processor architecture at run time. Through LU factorization, we demonstrate that LaRIS can fully utilize different heterogeneous systems by launching and orchestrating different vendor-library kernels without any change in the source code.

Monil, M. A. H.↗