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At least 1,261 records · Page 70

Multi-omic dynamics associate oxygenic photosynthesis with nitrogenase-mediated H 2 production in Cyanothece sp. ATCC 51142

This study combines transcriptomic and proteomic profiling to provide new insights on the metabolic relationship between oxygenic photosynthesis and nitrogenase-mediated H 2 production in the model cyanobacterium, Cyanothece sp. ATCC 51142. To date, the proposed mechanisms used to describe the energy metabolism processes that support H 2 production in Cyanothece 51142 have assumed that ATP and reductant requirements are derived solely from glycogen oxidation and/or cyclic-electron flow around photosystem I. The results from this study present and test an alternative hypothesis by showing that net-positive rates of oxygenic photosynthesis and increased expression of photosystem II reaction centers correspond and are synchronized with nitrogenase expression and H 2 production. These findings provide a new and more complete view on the metabolic processes contributing to the energy budget of photosynthetic H 2 production and highlight the likely role of photocatalytic H 2 O oxidation as a major participating process.

59 BASIC BIOLOGICAL SCIENCES↗

Calculations of the radiative and dynamical state of the Venus atmosphere

Results are reported for accurate multiple-scattering calculations to determine the solar-energy deposition profile in the atmosphere of Venus. It is found that most of the absorbed energy is deposited in the main cloud-layer region, located at altitudes above 35 km, and that the ground receives approximately 3% of the energy absorbed in toto by Venus. Using these results, vertical temperature profiles are computed under conditions of pure radiative equilibrium and radiative-convective equilibrium. Since the latter results satisfactorily match the temperature structure determined from various spacecraft observations, it is inferred that the greenhouse effect can account for the high surface temperature. Aerosols make an important contribution to the infrared opacity in these calculations. Preliminary three-dimensional calculations of the general circulation of the atmosphere are discussed which incorporate the results of the radiative calculations.

Pollack, J. B.↗

A self-consistent field method for galactic dynamics

The present study describes an algorithm for evolving collisionless stellar systems in order to investigate the evolution of systems with density profiles like the R exp 1/4 law, using only a few terms in the expansions. A good fit is obtained for a truncated isothermal distribution, which renders the method appropriate for galaxies with flat rotation curves. Calculations employing N of about 10 exp 6-7 are straightforward on existing supercomputers, making possible simulations having significantly smoother fields than with direct methods such as tree-codes. Orbits are found in a given static or time-dependent gravitational field; the potential, phi(r, t) is revised from the resultant density, rho(r, t). Possible scientific uses of this technique are discussed, including tidal perturbations of dwarf galaxies, the adiabatic growth of central masses in spheroidal galaxies, instabilities in realistic galaxy models, and secular processes in galactic evolution.

Hernquist, Lars↗

Atmospheric Carbon Cycle Dynamics Over the Above Domain: an Integrated Analysis Using Aircraft Observations (Arctic-CA) and Model Simulations (GEOS)

The Arctic Carbon Atmospheric Profiles (Arctic-CAP) project conducted six airborne surveys of Alaska and northwestern Canada between April and November 2017 to capture the spatial and temporal gradients of northern high-latitude carbon dioxide (CO2), methane (CH4) and carbon monoxide (CO) as part of NASA's Arctic-Boreal Vulnerability Experiment (ABoVE). The Arctic-CAP sampling strategy involved acquiring vertical profiles of CO2, CH4 and CO from the surface to 5 km altitude at 25 sites around the ABoVE domain on a 4- to 6-week time interval. We observed vertical gradients of CO2, CH4 and CO that vary by eco-region and duration of the sampling period, which spanned the majority of the seasonal cycle. All Arctic-CAP measurements were compared to a global simulation using the Goddard Earth Observing System (GEOS) modeling system. Comparisons with GEOS simulations of atmospheric CO2, CH4 and CO highlight the potential of these multi-species observations to inform improvements in surface flux estimates and the representation of atmospheric transport. GEOS simulations provide estimates of the near surface average CO2 and CH4 enhancements that are well correlated with aircraft observations (R=0.74 and R=0.60 respectively), suggesting that GEOS has reasonable fidelity over this complex and heterogeneous region. This model-data comparison over the ABoVE domain reveals that while current state-of-the-art models and flux estimates are able to capture broadscale spatial and temporal patterns in near-surface CO2 and CH4 concentrations, more work is needed to resolve fine-scale flux features that are observed. The study also provides a framework for benchmarking a global model at regional scales, which is needed to use climate models as tools to investigate high-latitude carbon-climate feedbacks.

C Sweeney↗

A simulation of the intracluster medium with feedback from cluster galaxies

We detail method and report first results from a three-dimensional hydrodynamical and N-body simulation of the formation and evolution of a Coma-sized cluster of galaxies, with the intent of studying the history of the hot, X-ray emitting intracluster medium. Cluster gas, galaxies, and dark matter are included in the model. The galaxies and dark matter fell gravitational forces; the cluster gas also undergoes hydrodynamical effects such as shock heating and PdV work. For the first time in three dimensions, we include modeling of ejection of processed gas from the simulated galaxies by winds, including heating and heavy element enrichment. For comparison, we employ a `pure infall' simulation using the same initial conditions but with no galaxies or winds. We employ an extreme ejection history for galactic feedback in order to define the boundary of likely models. As expected, feedback raises the entropy of the intracluster gas, preventing it from collapsing to densities as high as those attained in the infall model. The effect is more pronounced in subclusters formed at high redshift. The cluster with feedback is always less X-ray luminous, but experiences more rapid luminosity evolution, than the pure infall cluster. Even employing an extreme ejection model, the final gas temperature is only approximately 15% larger than in the infall model. The radial temperature profile is very nearly isothermal within 1.5 Mpc. The cluster galaxies in the feedback model have a velocity dispersion approximately 15% lower than the dark matter. This results in the true ratio of specific energies in galaxies to gas being less than one, beta(sub spec) approximately 0.7. The infall model predicts beta(sub spec) approximately 1.2. Large excursions in these values occur over time, following the complex dynamical history of the cluster. The morphology of the X-ray emission is little affected by feedback. The emission profiles of both clusters are well described by the standard beta-model with beta(sub fit) approximately equal to 0.7 - 0.9. X-ray mass estimates based on the assumptions of hydrostatic equilibrium and the applicability of the beta-model are quite accurate in both cases. A strong, radial iron abundance gradient is present, which develops as a consequence of the steepening of the galaxy density profile over time. Spectroscopic observations using nonimaging detectors with wide (approximately 45 min) fields of view dramatically smear the gradient. Observations with arcminute resolution, made available with the ASCA satellite, would readily resolve the gradient.

Metzler, Christopher A.↗

Comparison of Experimental Data and Computations Fluid Dynamics Analysis for a Three Dimensional Linear Plug Nozzle

A three dimensional linear plug nozzle of area ratio 12.79 was designed by Astrium. The nozzle was tested within the German National Technology Program LION in a cold air wind tunnel by TU Dresden. The experimental hardware and test conditions are described. Experimental data was obtained for the nozzle without plug side wall fences and then with plug side wall fences. Experimental data for two nozzle pressure ratios (NPR), 116 and 45, are presented for the without fence and with fence configurations. Schlieren images of both NPR were recorded. Axial profiles of plug wall static pressures were measured at several spanwise locations and on the plug base. Detailed computational fluid dynamics (CFD) analysis was performed for these nozzle configurations by NASA MSFC. The CFD exhibits good agreement with the experimental data. A detailed comparison of the CFD results and the experimental plug wall pressure data is given for four test conditions; at both NPRs, without and with plug side wall fences. Numerical schlieren images are compared to experimental schlieren images. Nozzle thrust efficiencies are calculated from the CFD results. The CFD results are used to illustrate the plug nozzle fluid dynamics for all four test conditions. The effect of the plug side wall fences at both NPRs is emphasized.

Ruf, J. H.↗

Spin waves in the soft layer of exchange-coupled soft/hard bilayers

The magnetic dynamical properties of the soft layer in exchange-coupled soft/hard bilayers have been investigated numerically using a one-dimensional atomic chain model. The frequencies and spatial profiles of spin wave eigenmodes are calculated during the magnetization reversal process of the soft layer. The spin wave modes exhibit a spatially modulated amplitude, which is especially evident for high-order modes. A dynamic pinning effect of surface magnetic moment is observed. The spin wave eigenfrequency decreases linearly with the increase of the magnetic field in the uniformly magnetized state and increases nonlinearly with field when spiral magnetization configuration is formed in the soft layer.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

RISK MONITORING CAPABILITES FROM DYNAMIC PRA DATA

Risk Monitors (RMs) are software tools that are employed in nuclear power plants to monitor the safety properties of the plant itself during operation. These safety properties are generated using classical PRA methods which are typically based on static Boolean structures such as Fault-Trees (FTs) and Event-Trees (ETs). The outcomes of these methods are Core Damage Frequency (CDF) and risk importance values of plant components (e.g., valves and pumps). Examples of Risk Importance Measures (RIMs) commonly used are: Risk Achievement Worth (RAW), Risk Reduction Worth (RRW), Birnbaum (B) and Fussell-Vesely (FV) [1,2]. In a RM these values are updated in real time once plant components status is updated (e.g., under maintenance, off-line, testing). In addition, RMs can be used to optimize maintenance schedules so those safety features of the plant are below plant standard values. This paper presents an approach to create temporal profiles of RIMs (i.e., RM capabilities) given a temporal change of the plant configuration. Instead of employing data generated by ETs and FTs, the proposed approach will employ data generated by Dynamic PRA methods. In contrast to classical PRA methods, Dynamic PRA methods couple stochastic methods with safety analysis codes to determine risk associate to complex systems such as nuclear plants. Compared to classical PRA methods, they can evaluate with higher resolution the safety impact of timing and sequencing of events on the accident progression. We will describe how classical RIMs can be generated by Dynamic PRA data and then we will show how the temporal profiles of the RIMs can be generated given a temporal profile of the system configuration.

97 MATHEMATICS AND COMPUTING↗

Dry Season Transpiration and Soil Water Dynamics in the Central Amazon

With current observations and future projections of more intense and frequent droughts in the tropics, understanding the impact that extensive dry periods may have on tree and ecosystem-level transpiration and concurrent carbon uptake has become increasingly important. Here, we investigate paired soil and tree water extraction dynamics in an old-growth upland forest in central Amazonia during the 2018 dry season. Tree water use was assessed via radial patterns of sap flow in eight dominant canopy trees, each a different species with a range in diameter, height, and wood density. Paired multi-sensor soil moisture probes used to quantify volumetric water content dynamics and soil water extraction within the upper 100 cm were installed adjacent to six of those trees. To link depth-specific water extraction patterns to root distribution, fine root biomass was assessed through the soil profile to 235 cm. To scale tree water use to the plot level (stand transpiration), basal area was measured for all trees within a 5 m radius around each soil moisture probe. The sensitivity of tree transpiration to reduced precipitation varied by tree, with some increasing and some decreasing in water use during the dry period. Tree-level water use scaled with sapwood area, from 11 to 190 L per day. Stand level water use, based on multiple plots encompassing sap flow and adjacent trees, varied from ∼1.7 to 3.3 mm per day, increasing linearly with plot basal area. Soil water extraction was dependent on root biomass, which was dense at the surface (i.e., 45% in the upper 5 cm) and declined dramatically with depth. As the dry season progressed and the upper soil dried, soil water extraction shifted to deeper levels and model projections suggest that much of the water used during the month-long dry-down could be extracted from the upper 2–3 m. Results indicate variation in rates of soil water extraction across the research area and, temporally, through the soil profile. These results provide key information on whole-tree contributions to transpiration by canopy trees as water availability changes. In addition, information on simultaneous stand level dynamics of soil water extraction that can inform mechanistic models that project tropical forest response to drought.

54 ENVIRONMENTAL SCIENCES↗

FLEET Velocimetry Measurements on a Transonic Airfoil

Femtosecond laser electronic excitation tagging (FLEET) velocimetry was used to study the flowfield around a symmetric, transonic airfoil in the NASA Langley 0.3-m TCT facility. A nominal Mach number of 0.85 was investigated with a total pressure of 125 kPa and total temperature of 280 K. Two-components of velocity were measured along vertical profiles at different locations above, below, and aft of the airfoil at angles of attack of 0 deg, 3.5 deg, and 7deg. Measurements were assessed for their accuracy, precision, dynamic range, spatial resolution, and overall measurement uncertainty in the context of the applied flowfield. Measurement precisions as low as 1 m/s were observed, while overall uncertainties ranged from 4 to 5 percent. Velocity profiles within the wake showed sufficient accuracy, precision, and sensitivity to resolve both the mean and fluctuating velocities and general flow physics such as shear layer growth. Evidence of flow separation is found at high angles of attack.

Burns, Ross A.↗

Uncovering universal rules governing the selectivity of the archetypal DNA glycosylase TDG

Thymine DNA glycosylase (TDG) is a pivotal enzyme with dual roles in both genome maintenance and epigenetic regulation. TDG is involved in cytosine demethylation at CpG sites in DNA. Here we have used molecular modeling to delineate the lesion search and DNA base interrogation mechanisms of TDG. First, we examined the capacity of TDG to interrogate not only DNA substrates with 5-carboxyl cytosine modifications but also G:T mismatches and nonmismatched (A:T) base pairs using classical and accelerated molecular dynamics. To determine the kinetics, we constructed Markov state models. Base interrogation was found to be highly stochastic and proceeded through insertion of an arginine-containing loop into the DNA minor groove to transiently disrupt Watson–Crick pairing. Next, we employed chain-of-replicas path-sampling methodologies to compute minimum free energy paths for TDG base extrusion. We identified the key intermediates imparting selectivity and determined effective free energy profiles for the lesion search and base extrusion into the TDG active site. Here, our results show that DNA sculpting, dynamic glycosylase interactions, and stabilizing contacts collectively provide a powerful mechanism for the detection and discrimination of modified bases and epigenetic marks in DNA.

59 BASIC BIOLOGICAL SCIENCES↗

Pulsar Wind Bubble Blowout from a Supernova

For pulsars born in supernovae, the expansion of the shocked pulsar wind nebula is initially in the freely expanding ejecta of the supernova. While the nebula is in the inner flat part of the ejecta density profile, the swept-up, accelerating shell is subject to the Rayleigh–Taylor instability. We carried out two- and three-dimensional simulations showing that the instability gives rise to filamentary structure during this initial phase but does not greatly change the dynamics of the expanding shell. The flow is effectively self-similar. If the shell is powered into the outer steep part of the density profile, the shell is subject to a robust Rayleigh–Taylor instability in which the shell is fragmented and the shocked pulsar wind breaks out through the shell. The flow is not self-similar in this phase. For a wind nebula to reach this phase requires that the deposited pulsar energy be greater than the supernova energy, or that the initial pulsar period be in the ms range for a typical 10{sup 51} erg supernova. These conditions are satisfied by some magnetar models for Type I superluminous supernovae. We also consider the Crab Nebula, which may be associated with a low energy supernova for which this scenario applies.

79 ASTRONOMY AND ASTROPHYSICS↗

Molecular-level insights into structure and dynamics in ionic liquids and polymer gel electrolytes

We report designing new electrolytes requires a better understanding of the correlation between their transport properties and their molecular structure. In this work, we present a detailed study of ionic liquids and polymer gel electrolytes probing their structure and dynamics by nuclear magnetic resonance (NMR) spectroscopy. In particular, ammonium- and phosphonium-based ionic liquids (ILs) are combined with different LiTFSI concentrations, and then with different ratios of poly(methylmethacrylate) polymer. The temperature dependence of self-diffusion coefficients of mobile species, D Li+ , D TFSI- and D P4441+ or D N4441+ , measured by pulsed field gradient (PFG) NMR spectroscopy obeys the Arrhenius equation. Diffusivity of [P4441][TFSI] ILs is found to be greater than those of the [N4441][TFSI] ILs in both liquid and gel electrolytes. Solid state NMR experiments including 13 C and 19 F MAS, 13 C{ 19 F}, 13 C{ 1 H} CPMAS probe the local structure and molecular-level interactions between ions and polymer in gel electrolytes, particularly for samples with higher PMMA content (≥25 wt%). Finally, the fast field cycling relaxometry has been used to unveil the rotational and translational dynamics of P4441 + or N4441 + and TFSI - by measuring 1 H and 19 F R 1 relaxation rate profiles at different temperatures. A comprehensive NMR analysis including relaxation studies at low magnetic field provides decisive new insights regarding the formation of ionic clusters and the interaction of ions with the polymer chain in the case of the gel electrolytes.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Plasma dynamics above solar flare soft x-ray loop tops

We measure non-thermal motions in flare loop tops and above the loop tops using profiles of highly ionized spectral lines of Fe XXIV and Fe XXIII formed at multimillion-degree temperatures. Non-thermal motions that may be due to turbulence or multiple flow regions along the line of sight are extracted from the line profiles. The non-thermal motions are measured for four flares seen at or close to the solar limb. The profile data are obtained using the Extreme-ultraviolet Imaging Spectrometer on the Hinode spacecraft. The multimillion-degree non-thermal motions are between 20 and 60 km s{sup –1} and appear to increase with height above the loop tops. Motions determined from coronal lines (i.e., lines formed at about 1.5 MK) tend to be smaller. The multimillion-degree temperatures in the loop tops and above range from about 11 MK to 15 MK and also tend to increase with height above the bright X-ray-emitting loop tops. The non-thermal motions measured along the line of sight, as well as their apparent increase with height, are supported by Solar Dynamics Observatory Atmospheric Imaging Assembly measurements of turbulent velocities in the plane of the sky.

79 ASTRONOMY AND ASTROPHYSICS↗

Three-Dimensional Venturi Sensor for Measuring Extreme Winds

A three-dimensional (3D) Venturi sensor is being developed as a compact, rugged means of measuring wind vectors having magnitudes of as much as 300 mph (134 m/s). This sensor also incorporates auxiliary sensors for measuring temperature from -40 to +120 F (-40 to +49 C), relative humidity from 0 to 100 percent, and atmospheric pressure from 846 to 1,084 millibar (85 to 108 kPa). Conventional cup-and-vane anemometers are highly susceptible to damage by both high wind forces and debris, due to their moving parts and large profiles. In addition, they exhibit slow recovery times contributing to an inaccurately high average-speed reading. Ultrasonic and hot-wire anemometers overcome some of the disadvantages of the cup and-vane anemometers, but they have other disadvantageous features, including limited dynamic range and susceptibility to errors caused by external acoustic noise and rain. In contrast, the novel 3D Venturi sensor is less vulnerable to wind damage because of its smaller profile and ruggedness. Since the sensor has no moving parts, it provides increased reliability and lower maintenance costs. It has faster response and recovery times to changing wind conditions than traditional systems. In addition, it offers wide dynamic range and is expected to be relatively insensitive to rain and acoustic energy. The Venturi effect in this sensor is achieved by the mirrored double-inflection curve, which is then rotated 360 to create the desired detection surfaces. The curve is optimized to provide a good balance of pressure difference between sensor ports and overall maximum fluid velocity while in the shape. Four posts are used to separate the two shapes, and their size and location were chosen to minimize effects on the pressure measurements. The 3D Venturi sensor has smart software algorithms to map the wind pressure exerted on the surfaces of the design. Using Bernoulli's equation, the speed of the wind is calculated from the differences among the pressure readings at the various ports. The direction of the wind is calculated from the spatial distribution and magnitude of the pressure readings. All of the pressure port sizes and locations have been optimized to minimize measurement errors and to reside in areas demonstrating a stable pressure reading proportional to the velocity range.

Zysko, Jan A.↗

Laser energy deposition and its dynamic uniformity for direct-drive capsules

The total laser energy deposition of multi-laser-beam irradiation is not only associated with the dynamic behavior of capsule but also the time-dependent angular distribution of the energy deposition of each beam around its axis. The dynamic behavior of laser energy deposition does not linearly respond to the dynamic behavior of laser irradiation. The laser energy deposition uniformity determines the symmetry of implosion. The dynamic behavior of laser energy deposition non-uniformity in OMEGA for laser with square beam shape intensity profile is investigated. In the case of smaller laser spot, the initial non-uniformity caused by laser beam overlap is very high. The shell asymmetry caused by the high initial laser irradiation non-uniformity is estimated by the extent of distortion of shock front which is not as severe as expected before the shock driven by main pulse arrives. This suggests that the large initial non-uniformity due to smaller laser spot is one of the elements that seed disturbance before the main pulse. The rms of laser energy deposition during the main pulse remains above 2%. Since the intensity of main driving pulse usually is several times higher than that of picket pulses, the non-uniformity in main pulse period may jeopardize the symmetrical implosion. When dynamic behavior of capsule is considered, the influence of beam pointing error, the target positioning error, and beam-to-beam power unbalance is quite different for the case of static capsule.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗