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Correlation of Injury Simulation with Clinical Assessment of Traumatic Brain Injury

This report contains a summary of our efforts to correlate head injury simulations predicting intracranial fluid cavitation with clinical assessments of brain injury from blunt impact to the head. Magnetic resonance imaging (MRI) data, collected on traumatic brain injury (TBI) subjects by researchers at the MIND Institute of New Mexico, was acquired for the current work. Specific blunt impact TBI case histories were selected from the TBI data for further study and possible correlation with simulation. Both group and single-subject case histories were examined. We found one single-subject case that was particularly suited for correlation with simulation. Diffusion tensor image (DTI) analysis of the TBI subject identified white matter regions within the brain displaying reductions in fractional anisotropy (FA), an indicator of local damage to the white matter axonal structures. Analysis of functional magnetic resonance image (fMRI) data collected on this individual identified localized regions of the brain displaying hypoactivity, another indicator of brain injury. We conducted high fidelity simulations of head impact experienced by the TBI subject using the Sandia head-neck-torso model and the shock physics computer code CTH. Intracranial fluid cavitation predictions were compared with maps of DTI fractional anisotropy and fMRI hypoactivity to assess whether a possible correlation exists. The ultimate goal of this work is to assess whether one can correlate simulation predictions of intracranial fluid cavitation with the brain injured sites identified by the fMRI and DTI analyses. The outcome of this effort is described in this report.

59 BASIC BIOLOGICAL SCIENCES↗

Improving the Performance of Medical Imaging Applications using SYCL

In this report, we are interested in applying the SYCL programming model to medical imaging applications for a study on performance portability and programming productivity. The SYCL standard specifies a cross-platform abstraction layer that enables programming of heterogeneous computing systems using standard C++. As opposed to the Open Computing Language (OpenCL) programming model, in which host and device code are generally written in different programming languages [1], SYCL can combine host and device code for an application in a type-safe way to improve development productivity and performance portability.

97 MATHEMATICS AND COMPUTING↗

Correlation of Injury Simulation with Clinical Assessment of Traumatic Brain Injury

This report contains a summary of our efforts to correlate head injury simulations predicting intracranial fluid cavitation with clinical assessments of brain injury from blunt impact to the head. Magnetic resonance imaging (MRI) data, collected on traumatic brain injury (TBI) subjects by researchers at the MIND Institute of New Mexico, was acquired for the current work. Specific blunt impact TBI case histories were selected from the TBI data for further study and possible correlation with simulation. Both group and single-subject case histories were examined. We found one single-subject case that was particularly suited for correlation with simulation. Diffusion tensor image (DTI) analysis of the TBI subject identified white matter regions within the brain displaying reductions in fractional anisotropy (FA), an indicator of local damage to the white matter axonal structures. Analysis of functional magnetic resonance image (fMRI) data collected on this individual identified localized regions of the brain displaying hypoactivity, another indicator of brain injury. We conducted high fidelity simulations of head impact experienced by the TBI subject using the Sandia head-neck-torso model and the shock physics computer code CTH. Intracranial fluid cavitation predictions were compared with maps of DTI fractional anisotropy and fMRI hypoactivity to assess whether a possible correlation exists. The ultimate goal of this work is to assess whether one can correlate simulation predictions of intracranial fluid cavitation with the brain injured sites identified by the fMRI and DTI analyses. The outcome of this effort is described in this report.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Advancing SiC clad fuel performance model: bridging micro- and macro-scale models and experimental validation

This report presents a workflow for advancing fuel performance modeling of SiC composite cladding for light-water reactors by linking microscale, experimental data-informed finite element analysis with rod-scale fuel performance codes such as BISON. The workflow uses X-ray computed tomography (XCT) to capture the actual geometry and processing-induced defects of as-fabricated SiC composite tube specimens, particularly porosity and wall-thickness variations, and converts the segmented XCT volumes into image-based finite element meshes for high fidelity structural analysis.

Koyanagi, Takaaki [Oak Ridge National Laboratory (↗

Development and evaluation of a portable CZT coded aperture gamma-camera

We present the design and the evaluation of a CdZnTe (CZT) based gamma camera using a coded aperture mask. This camera, based on a 8 cm{sup 3} detection module, is small enough to be portable and battery-powered (4 kg weight and 4 W power dissipation). As the detector has spectral capabilities, the gamma camera allows isotope identification and colored imaging, by affecting one color channel to each identified isotope. As all data processing is done at real time, the user can directly observe the outcome of an acquisition and can immediately react to what he sees. We first present the architecture of the system, how the detector works, and its performances. After, we focus on the imaging technique used and its strengths and limitations. Finally, results concerning sensitivity, spatial resolution, field of view and multi-isotope imaging are shown and discussed. (authors)

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

A FIRST MEASUREMENT OF THE PROPER MOTION OF THE LEO II DWARF SPHEROIDAL GALAXY

We use 14 year baseline images obtained with the Wide Field and Planetary Camera 2 on board the Hubble Space Telescope (HST) to derive a proper motion for one of the Milky Way's most distant dwarf spheroidal companions, Leo II, relative to an extragalactic background reference frame. Astrometric measurements are performed in the effective point-spread function formalism using our own developed code. An astrometric reference grid is defined using 3224 stars that are members of Leo II and brighter than a magnitude of 25 in the F814W band. We identify 17 compact extragalactic sources, for which we measure a systemic proper motion relative to this stellar reference grid. We derive a proper motion [{mu}{sub {alpha},{mu}{delta}}] = [+104 {+-}113,-33 {+-} 151] {mu}as yr{sup -1} for Leo II in the heliocentric reference frame. Though marginally detected, the proper motion yields constraints on the orbit of Leo II. Given a distance of d {approx_equal} 230 kpc and a heliocentric radial velocity v{sub r} = +79 km s{sup -1}, and after subtraction of the solar motion, our measurement indicates a total orbital motion v{sub G} = 266.1 {+-} 128.7 km s{sup -1} in the Galactocentric reference frame, with a radial component v{sub r{sub G}}=21.5{+-}4.3 km s{sup -1} and tangential component v{sub t{sub G}} = 265.2 {+-} 129.4 km s{sup -1}. The small radial component indicates that Leo II either has a low-eccentricity orbit or is currently close to perigalacticon or apogalacticon distance. We see evidence for systematic errors in the astrometry of the extragalactic sources which, while close to being point sources, are slightly resolved in the HST images. We argue that more extensive observations at later epochs will be necessary to better constrain the proper motion of Leo II. We provide a detailed catalog of the stellar and extragalactic sources identified in the HST data which should provide a solid early-epoch reference for future astrometric measurements.

79 ASTRONOMY AND ASTROPHYSICS↗

Characterizing the Thermal Column Beam in the University of Massachusetts Lowell Research Reactor

The University of Massachusetts Lowell operates a 1 MW, light water cooled and moderated Research Reactor (UMLRR) fueled by low-enriched uranium to generate neutron flux that is used at a variety of in-core and beam port facilities within the reactor to perform irradiation experiments for academic and industrial research. One of the irradiation sites is a graphite-moderated thermal column designed to deliver a collimated beam of thermal neutrons to a neutron radiography imaging system. A detailed characterization of the neutron beam is essential for the design and interpretation of experiments at the facility and for radiation safety. This work aimed to characterize the neutron flux and energy spectrum in the UMLRR thermal column beam by employing experimental and computational methods known as the foil activation and spectrum unfolding technique. A previously existing Monte Carlo N-Particle transport (MCNP) model of the UMLRR reactor core has been extended to the thermal column where the neutron flux and energy spectrum have been computed and experimentally validated. This work employed the foil activation and spectrum unfolding technique along with neutron transport computation to extend the knowledge of the neutron fluence and energy spectrum from the UMLRR core to the adjacent thermal column beam. Radiography systems are used for materials characterization, studying dynamic behavior of engineering systems, and for nuclear forensics applications. Foil activation is an experimental method where thin foils of highly pure materials are placed in the beam where interactions between the neutrons and the foil material activate radioisotopes in the foils whose activities can be measured after the irradiation. Downstream computation with MCNP and the spectrum unfolding code SAND can deconvolute the neutron fluence and energy spectrum that must have been necessary to induce the production rates of radioisotopes that were obtained through foil activation. The necessary ingredients for successful spectrum unfolding are the experimentally measured production rates and some a priori (initial guess) knowledge of the flux spectrum. The thermal column is equipped with a neutron radiography imaging system, so any experimenters who desire to use neutron radiography at UMass Lowell will benefit significantly from knowing the characteristics of the neutron beam. Comprehensive knowledge of these characteristics of the beam is essential to compare and benchmark results obtained for similar experiments at other facilities. The Integrated Nuclear Security and Safeguards Laboratory (INSSL) is pursuing the investigation of the performance of self-healing materials under stress-strain environments and the characterization of radiation detectors and special containers for storing and transporting nuclear material. This work contributes to the improvement of the current radiography system, expands the utility of the system for nuclear safeguards and security application and provides information that will enhance the general safety of the UMLRR experimental facilities. The main objective of this work has been achieved; an appropriate neutron flux spectrum for the UMLRR thermal column beam has been determined using the foil activation method followed by spectrum unfolding. There now exists an experimentally validated computational model of the neutron flux spectrum and the thermal column's neutron environment is characterized. We can conclude that the thermal column is well characterized; an appropriate neutron flux spectrum has been determined through an experimentally validated computational model. Future experimenters interested in the thermal column may now expand on the computational model or use the spectral information for their own purposes. The knowledge gained herein will be helpful for the INSSL's future work using neutron radiography to analyze the effectiveness of self-healing materials and special containers. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Sharing leaky-integrate-and-fire neurons for memory-efficient spiking neural networks

Spiking Neural Networks (SNNs) have gained increasing attention as energy-efficient neural networks owing to their binary and asynchronous computation. However, their non-linear activation, that is Leaky-Integrate-and-Fire (LIF) neuron, requires additional memory to store a membrane voltage to capture the temporal dynamics of spikes. Although the required memory cost for LIF neurons significantly increases as the input dimension goes larger, a technique to reduce memory for LIF neurons has not been explored so far. To address this, we propose a simple and effective solution, EfficientLIF-Net, which shares the LIF neurons across different layers and channels. Our EfficientLIF-Net achieves comparable accuracy with the standard SNNs while bringing up to ~4.3× forward memory efficiency and ~21.9× backward memory efficiency for LIF neurons. We conduct experiments on various datasets including CIFAR10, CIFAR100, TinyImageNet, ImageNet-100, and N-Caltech101. Furthermore, we show that our approach also offers advantages on Human Activity Recognition (HAR) datasets, which heavily rely on temporal information. The code has been released at https://github.com/Intelligent-Computing-Lab-Yale/EfficientLIF-Net.

60 APPLIED LIFE SCIENCES↗

Areal density and spatial resolution of high energy electron radiography

Ultrafast imaging tools are of great importance for determining the dynamic density distribution in high energy density (HED) matter. In this work, we designed a high energy electron radiography (HEER) system based on a linear electron accelerator to evaluate its capability for imaging HED matter. 40 MeV electron beams were used to image an aluminum target to study the density resolution and spatial resolution of HEER. The results demonstrate a spatial resolution of tens of micrometers. The interaction of the beams with the target and the beam transport of the transmitted electrons are further simulated with EGS5 and PARMELA codes, with the results showing good agreement with the experimental resolution. Furthermore, the experiment can be improved by adding an aperture at the Fourier plane.

areal density resolution↗

Monte Carlo-based treatment planning system calculation engine for microbeam radiation therapy

Purpose: Microbeam radiation therapy (MRT) is a synchrotron radiotherapy technique that explores the limits of the dose-volume effect. Preclinical studies have shown that MRT irradiations (arrays of 25-75-{mu}m-wide microbeams spaced by 200-400 {mu}m) are able to eradicate highly aggressive animal tumor models while healthy tissue is preserved. These promising results have provided the basis for the forthcoming clinical trials at the ID17 Biomedical Beamline of the European Synchrotron Radiation Facility (ESRF). The first step includes irradiation of pets (cats and dogs) as a milestone before treatment of human patients. Within this context, accurate dose calculations are required. The distinct features of both beam generation and irradiation geometry in MRT with respect to conventional techniques require the development of a specific MRT treatment planning system (TPS). In particular, a Monte Carlo (MC)-based calculation engine for the MRT TPS has been developed in this work. Experimental verification in heterogeneous phantoms and optimization of the computation time have also been performed. Methods: The penelope/penEasy MC code was used to compute dose distributions from a realistic beam source model. Experimental verification was carried out by means of radiochromic films placed within heterogeneous slab-phantoms. Once validation was completed, dose computations in a virtual model of a patient, reconstructed from computed tomography (CT) images, were performed. To this end, decoupling of the CT image voxel grid (a few cubic millimeter volume) to the dose bin grid, which has micrometer dimensions in the transversal direction of the microbeams, was performed. Optimization of the simulation parameters, the use of variance-reduction (VR) techniques, and other methods, such as the parallelization of the simulations, were applied in order to speed up the dose computation. Results: Good agreement between MC simulations and experimental results was achieved, even at the interfaces between two different media. Optimization of the simulation parameters and the use of VR techniques saved a significant amount of computation time. Finally, parallelization of the simulations improved even further the calculation time, which reached 1 day for a typical irradiation case envisaged in the forthcoming clinical trials in MRT. An example of MRT treatment in a dog's head is presented, showing the performance of the calculation engine. Conclusions: The development of the first MC-based calculation engine for the future TPS devoted to MRT has been accomplished. This will constitute an essential tool for the future clinical trials on pets at the ESRF. The MC engine is able to calculate dose distributions in micrometer-sized bins in complex voxelized CT structures in a reasonable amount of time. Minimization of the computation time by using several approaches has led to timings that are adequate for pet radiotherapy at synchrotron facilities. The next step will consist in its integration into a user-friendly graphical front-end.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

SU-E-T-609: Perturbation Effects of Pedicle Screws On Radiotherapy Dose Distributions

Purpose: Radiation therapy in conjunction with surgical implant fixation is a common combined treatment in case of bone metastases. However, metal implants generally used in orthopedic implants perturb radiation dose distributions. Carbon-Fiber Reinforced (CFR) PEEK material has been recently introduced for production of intramedullary screws and plates. Gold powder can be added to the CFR-PEEK material in order to enhance visibility of the screws during intraoperative imaging procedures. In this work, we investigated the perturbation effects of the pedicle screws made of CFR-PEEK, CFR-PEEK with added gold powder (CFR-PEEK-AU) and Titanium (Ti) on radiotherapy dose distributions. Methods: Monte Carlo (MC) simulations were performed using the EGSnrc code package for 6MV beams with 10×10 fields at SSD=100cm. By means of MC simulations, dose distributions around titanium, CFR- PEEK and CFR-PEEK-AU screws (manufactured by Carbo-Fix Orthopedics LTD, Israel) placed in a water phantom were calculated. The screw axis was either parallel or perpendicular to the beam axis. Dose perturbation (relative to dose in homogeneous water phantom) was assessed. Results: Maximum overdose due to backscatter was 10% for the Ti screws, 5% for the CFR-PEEK-AU screws and effectively zero for the CFR-PEEK screws. Maximum underdose due to attenuation was 25% for the Ti screws, 15% for the CFR-PEEK-AU screws and 5% for the CFR-PEEK screws. Conclusion: Titanium screws introduce the largest distortion on the radiation dose distribution. The gold powder added to the CFR-PEEK material improves visibility at the cost of increased dose perturbation. CFR-PEEK screws caused minimal alteration on the dose distribution. This can decrease possible over and underdose of adjacent tissue and thus favorably influence treatment efficiency. The use of such implants has potential clinical advantage in the treatment of neoplastic bone disease.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

2D-DIC Challenge MATLAB Analysis Code v. 1.0

This code replicates the analysis completed in the published article (see reference below) for the 2D-DIC Challenge (https://sem.org/dic-challenge/), conducted under the auspices of the Society for Experimental Mechanics (SEM). The purpose of the DIC Challenge is to provide a set of vetted and standard images, which all users and developers of Digital Image Correlation (DIC) software can use -DIC Challenge results from Sample 14 and Sample 15 of the DIC-Challenge images, and computes various statistics on the data, such as the noise, bias, and spatial resolution. P.L. Reu, E. Toussaint, E. Jones, H.A. Bruck, M. Iadicola, R. Balcaen, D.Z. Turner, T. Siebert, P. Lava, M. Simonsen (2018) Exp. Mech. 58(7):1067-1099, https://doi.org/10.1007/s11340-017-0349-0.

Jones, Elizabeth↗

Computation of Kernels for Full Waveform Seismic Inversion Using Parelasti

Full waveform inversion allows the seismologist to utilize an entire waveform and all the information it contains to help image the 3-D structure of the interior of the earth. This report summarizes the basic theory that has been developed in full waveform seismic inversion, primarily related to computation of sensitivity kernels. It then describes the implementation of this theory using Sandia Geophysics Department's Parelasti code, a 3-D full waveform elastic simulation algorithm. Finally, the code is validated using synthetics from simple homogeneous elastic earth models.

58 GEOSCIENCES↗

Validation of full-wave simulations for mode conversion of waves in the ion cyclotron range of frequencies with phase contrast imaging in Alcator C-Mod

Mode conversion of fast waves in the ion cyclotron range of frequencies (ICRF) is known to result in current drive and flow drive under optimised conditions, which may be utilized to control plasma profiles and improve fusion plasma performance. To describe these processes accurately in a realistic toroidal geometry, numerical simulations are essential. Quantitative comparison of these simulations and the actual experimental measurements is important to validate their predictions and to evaluate their limitations. The phase contrast imaging (PCI) diagnostic has been used to directly detect the ICRF waves in the Alcator C-Mod tokamak. The measurements have been compared with full-wave simulations through a synthetic diagnostic technique. Recently, the frequency response of the PCI detector array on Alcator C-Mod was recalibrated, which greatly improved the comparison between the measurements and the simulations. In this study, mode converted waves for D-{sup 3}He and D-H plasmas with various ion species compositions were re-analyzed with the new calibration. For the minority heating cases, self-consistent electric fields and a minority ion distribution function were simulated by iterating a full-wave code and a Fokker-Planck code. The simulated mode converted wave intensity was in quite reasonable agreement with the measurements close to the antenna, but discrepancies remain for comparison at larger distances.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Accurate real space iterative reconstruction (RESIRE) algorithm for tomography

Tomography has made a revolutionary impact on the physical, biological and medical sciences. The mathematical foundation of tomography is to reconstruct a three-dimensional (3D) object from a set of two-dimensional (2D) projections. As the number of projections that can be measured from a sample is usually limited by the tolerable radiation dose and/or the geometric constraint on the tilt range, a main challenge in tomography is to achieve the best possible 3D reconstruction from a limited number of projections with noise. Over the years, a number of tomographic reconstruction methods have been developed including direct inversion, real-space, and Fourier-based iterative algorithms. Here, we report the development of a real-space iterative reconstruction (RESIRE) algorithm for accurate tomographic reconstruction. RESIRE iterates between the update of a reconstructed 3D object and the measured projections using a forward and back projection step. The forward projection step is implemented by the Fourier slice theorem or the Radon transform, and the back projection step by a linear transformation. Our numerical and experimental results demonstrate that RESIRE performs more accurate 3D reconstructions than other existing tomographic algorithms, when there are a limited number of projections with noise. Furthermore, RESIRE can be used to reconstruct the 3D structure of extended objects as demonstrated by the determination of the 3D atomic structure of an amorphous Ta thin film. We expect that RESIRE can be widely employed in the tomography applications in different fields. Finally, to make the method accessible to the general user community, the MATLAB source code of RESIRE and all the simulated and experimental data are available at https://zenodo.org/record/7273314.

97 MATHEMATICS AND COMPUTING↗

Inference of experimental radial impurity transport on Alcator C-Mod: Bayesian parameter estimation and model selection

We present a fully Bayesian approach for the inference of radial profiles of impurity transport coefficients and compare its results to neoclassical, gyrofluid and gyrokinetic modeling. Using nested sampling, the Bayesian Impurity Transport InferencE (BITE) framework can handle complex parameter spaces with multiple possible solutions, offering great advantages in interpretative power and reliability with respect to previously demonstrated methods. BITE employs a forward model based on the pySTRAHL package, built on the success of the well-known STRAHL code [Dux, IPP Report, 2004], to simulate impurity transport in magnetically-confined plasmas. In this paper, we focus on calcium (Ca, Z=20) Laser Blow-Off injections into Alcator C-Mod plasmas. Multiple Ca atomic lines are diagnosed via high-resolution X-ray Imaging Crystal Spectroscopy and Vacuum Ultra-Violet measurements. We analyze a sawtoothing I-mode discharge for which neoclassical and turbulent (quasilinear and nonlinear) predictions are also obtained. Here, we find good agreement in diffusion across the entire radial extent, while turbulent convection and density profile peaking are estimated to be larger in experiment than suggested by theory. Efforts and challenges associated with the inference of experimental pedestal impurity transport are discussed.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

SU-F-T-660: Evaluating the Benefit of Using Dual-Function Fiducial Markers for In-Situ Delivery of Radiosenistizing Gold Nanoparticles During Image-Guided Radiotherapy

Purpose: Dual-function fiducials loaded with radiosensitizers, like gold nanoparticles (GNP), offer an innovative approach for ensuring geometric accuracy during image-guided radiotherapy (IGRT) and significantly increasing therapeutic efficacy due to controlled in-situ release of the radiosensitizers. This study retrospectively investigates the dosimetric benefit of using up to two such dual-function fiducial markers instead of traditional single function fiducials during IGRT. Methods: A computational code was developed to investigate the dosimetric benefit for 10 real patient tumor volumes of up to 6.5 cm diameter. The intra-tumoral space-time biodistribution of the GNP was modeled as in previous studies based on Fick’s second law. The corresponding dose-enhancement for each tumor voxel due to the GNP was also calculated for clinical 6MV beam configurations. Various loading concentrations (25–50 mg/g) were studied, as a function of GNP size, to determine potential for clinically significant dose enhancement. The time between initial implantation of dual-function fiducials to the beginning of radiotherapy was assumed to be 14 days as typical for many clinics. Results: A single dual-function fiducial could achieve at least a DEF of 1.2 for patients with tumors less than 1.4 cm diameter after 14 days. Replacing two single function fiducials with dual-function ones at the same locations achieved at least the required minimal DEF for tumors that are 2 cm diameter in 3 patients. The results also revealed dosimetrically better fiducial locations which could enable significant DEF when using one or two dual function fiducials. 2 nm sizes showed the most feasibility. Conclusion: The results highlight the potential of tumor sub-volume radiation boosting using GNP released from fiducials, and the ability to customize the DEF throughout the tumor by using two dual-function fiducials, varying the initial concentration and nanoparticle size. The results demonstrate potential for employing dual-function fiducials in the development of GNP-aided radiotherapy.

60 APPLIED LIFE SCIENCES↗

Inference of Experimental Radial Impurity Transport on Alcator C-Mod: Bayesian Parameter Estimation and Model Selection.

We present a fully Bayesian approach for the inference of radial profiles of impurity transport coefficients and compare its results to neoclassical, gyrofluid and gyrokinetic modeling. Using nested sampling, the Bayesian Impurity Transport InferencE (BITE) framework can handle complex parameter spaces with multiple possible solutions, offering great advantages in interpretative power and reliability with respect to previously demonstrated methods. BITE employs a forward model based on the pySTRAHL package, built on the success of the well-known STRAHL code [Dux, IPP Report, 2004], to simulate impurity transport in magnetically-confined plasmas. In this paper, we focus on calcium (Ca, Z=20) Laser Blow-Off injections into Alcator C-Mod plasmas. Multiple Ca atomic lines are diagnosed via high-resolution X-ray Imaging Crystal Spectroscopy and Vacuum Ultra-Violet measurements. We analyze a sawtoothing I-mode discharge for which neoclassical and turbulent (quasilinear and nonlinear) predictions are also obtained. We find good agreement in diffusion across the entire radial extent, while turbulent convection and density profile peaking are estimated to be larger in experiment than suggested by theory. Efforts and challenges associated with the inference of experimental pedestal impurity transport are discussed.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗