The National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource
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As of the 2019-20 field season, the U.S. Antarctic meteorite program has collected >23,000 meteorites. The U.S. collection is valuable in that it is classified in its entirety. The systematic collection methods employed have pro-vided meteorites of >40 types, many of which are the first of their type ever recognized. One of the early drivers for characterization of the entire U.S. Antarctic collection was to allow statistical comparisons. Early statistical assessments examined mass distributions and the relative frequency of meteorite types as well as comparisons to a defined set of modern falls. Using these statistics some have argued that the flux of H chondrites changed over time. Harvey used model size distributions to deconstruct the contribution of wind movement, meteorite supply and search losses to the Antarctic collection. Mass-based statistics and size distribution comparisons were examined, including comparison with modern falls/Saharan finds. Focus has been on geospatial statistics, with a comprehensive overview of the statistics of the Antarctic collections provided from the first 35 seasons of U.S. collection by ANSMET, as well as more recent assessments.
Recent surveys have documented the rapid rise of sound ordinances across state and county jurisdictions, which has become crucial for wind energy siting. However, the lack of information on ordinances and computational challenges in turbine sound modeling create uncertainties regarding how evolving policies may affect resource potential and clean energy objectives. Therefore, we develop an approach to evaluate wind turbine sound profiles at millions of locations across the U.S. and translate them into setback distances for every residential structure. Compared to a baseline reference scenario, we find a 7% reduction in the national wind energy capacity potential when accounting for counties with existing sound ordinances. Additionally, when expanding the surveyed sound ordinances nationwide, we observe a potential loss of 53% of the national wind capacity under the most stringent ordinances, with a disproportionate share of this lost capacity coming from high-quality and low-cost wind resource. This work reveals that neglecting sound ordinances results in a significant overestimation of wind resource potential and highlights the important trade-offs between increased wind energy deployment to meet target decarbonization goals and the social/environmental impacts of this deployment that must be considered.
Characterization of the morphology of strongly lensed galaxies is challenging because images of such galaxies are typically highly distorted. Lens modeling and source plane reconstruction is one approach that can provide reasonably undistorted images from which morphological measurements can be made, though at the expense of a highly spatially variable telescope point-spread function (PSF) when mapped back to the source plane. Unfortunately, modeling the lensing mass is a time- and resource-intensive process, and in many cases there are too few constraints to precisely model the lensing mass. If, however, useful morphological measurements could be made in the image plane rather than the source plane, it would bypass this issue and obviate the need for a source reconstruction process for some applications. We examine the use of the Gini coefficient as one such measurement. Because it depends on the cumulative distribution of the light of a galaxy, but not the relative spatial positions, the fact that surface brightness is conserved by lensing means that the Gini coefficient may be well preserved by strong gravitational lensing. Through simulations, we test the extent to which the Gini coefficient is conserved, including by effects due to PSF convolution and pixelization, to determine whether it is invariant enough under lensing to be used as a measurement of galaxy morphology that can be made in the image plane.
Project HOTSPOT, the Snake River Scientific Drilling Project (International Continental Scientific Drilling Program), tested for deep geothermal resources and examined the petrology of volcanic rocks with three drillholes in the central and western Snake River Plain (western USA). The MH-2 drillhole targeted fractured crystalline and hydrothermally altered basalt in the area of the Mountain Home Air Force Base (Idaho) to a total depth of 1821 m. At 1745 m depth the drillhole encountered flowing artesian hydrothermal fluids of at least 150 °C. We integrate geological analyses of core, image log, and borehole geophysical data, and in situ stress analyses to describe the structural environment that produces permeability for artesian flow. The rocks in the lower 540 m of the drillhole consist of basalt flows as much as 30 m thick, altered basalt, and thin sedimentary horizons. The mechanical stratigraphy is defined by nine mechanical horizons that are in three ranges of rock strength on the basis of experimentally determined strength data, core logging, and geophysical log signatures. Hydrothermal alteration products and mineralization in the core are associated with three highly faulted sections; the lowermost section is associated with the zone of flowing thermal water. Shear slip indicators on faults observed in core indicate slip ranging from pure strike slip to normal failure mechanisms in the stronger horizons. The borehole breakouts indicate that the maximum horizontal stress, SH, is oriented 047° ± 7°, and drilling-induced tensile fractures indicate that SH is oriented at 67° ± 21°. The in situ stress orientations exhibit little variation over the depth of the measured interval, but the SH magnitude varies with depth, and is best explained by an oblique normal fault stress regime. The geomechanical model indicates that if pore pressures at depth are elevated above the normal hydrostatic gradient, as observed here, the system has the potential to deform by mixed normal and strike-slip failure. Our observations and interpretations suggest that the MH-2 borehole was drilled into oblique normal faults that intersect a buried 300°-trending fault block masked by the basaltic volcanic complex. These data indicate that the transition from the central to western Snake River Plain is characterized by complex structures developed in response to a transitional stress state related to Snake River Plain and western Basin and Range stress regimes. Furthermore, the western Basin and Range stress and tectonic regime may extend from northern Nevada into western Idaho and may enhance the potential for geothermal resources by creating interconnected fracture and fault-related permeability at depth.
Highlights: • High EVA CuCl was recycled with 88.7% recovery from waste Cu craps. • The recycled CuCl displayed regular tetrahedron-like morphology. • The evolution mechanism of the recycled CuCl crystal was proposed. • The corresponding discharge capacity in LIB was 171.8 mAh/g after 50 cycles. • The results shed a new light on resource recovery and environmental protection. - Abstract: The wide applications of metal Cu inevitably resulted in a large quantity of waste Cu materials. In order to recover the useful Cu under the mild conditions and reduce the environmental emission, waste Cu scraps were recycled in the form of CuCl powders with high economic value added (EVA) via the facile hydrothermal route. The recycled CuCl powders were characterized in terms of scanning electron microscopy (SEM), energy dispersive X-ray spectroscopy (EDX) and X-ray diffraction (XRD). The results suggested that the recycled CuCl powders consisted of many regular tetrahedron-like micro-particles. Furthermore, in order to reduce the cost of lithium ion battery (LIB) anode and build the connection of waste Cu scraps and LIB, the recycled CuCl powders were evaluated as the anode active material of LIB. As expected, the reversible discharge capacity was about 171.8 mAh/g at 2.0 C even after 50 cycles, implying the satisfactory cycle stability. Clearly, the satisfactory results may open a new avenue to develop the circular economy and the sustainable energy industry, which would be very important in terms of both the resource recovery and the environmental protection.
We present developmentsforthe Sea-going Sky-Scanning Sun-tracking Advanced Research Ra-diometer(SeaSTAR), a ship-basedinstrument for aerosol characterizationover the ocean. Sun-tracking measurements of spectral solar irradiance are madein the conventional manner using filter-photodiode radiometers, and co-aligned polarizing filters are switched into the optical paths of the radiometersto measure polarized sky-radiance measurements. A robust high-performance robot with camera-feedback sun-tracking, and inertial measurement unit feed-forward motion-compensationis used for the sun-and sky-viewing modes respectively. An inverse-kinematics solver is used to point the instrument at the chosen position relative to the sunand ensure that the polarizer axis remains in the desired orientation, allowing the Stokes vector components of the sky radiance to be resolved by rotating the measurement barrel about a third robot axis. SeaSTAR aims to provide a resource for cost-effective validation of aerosol property measurements over the oceans in support of satellite missions such as PACE, SBG and GLIMR.
This study presents a new bottom-up biofabrication method to produce highly porous magnetic biochar from waste-derived fungal biomass. Neurospora crassa was grown in iron containing coagulation backwash (BW) diluted with primary effluent (PE) wastewater in two ratios of 1:4 (PE-BW 1:4) and 3:4 (PE-BW 3:4). The fungi encapsulated iron directly into biomass hyphae and carbonization resulted in one-step biochar preparation and maghemite (Fe2O3) formation. The morphology and structure of the materials were investigated using a suite of characterization tools. Results indicated that the physiochemical properties of each char were dependent on the blend used for fungal cultivation. PE-BW 1:4 had much larger average pore diameters (13.2 nm vs. 6.1 nm), less elemental surface carbon (2.1% vs. 23.7%), and more expansive Fe2O3 formation. Batch phosphorus adsorption experiments were conducted in the range of 0-90 mg-P/L, and a maximum adsorption density of 23.9 mg/g was achieved. Langmuir, Freundlich and Temkin isotherms were used to describe the interactions of the phosphate on the absorbents and an in-depth error analysis was conducted. Further characterization of the P-loaded chars indicated adsorption primarily via P-OH bonding on the surface of the materials. This new biofabrication method showed great potential to magnetic biochar production with excellent phosphorus adsorption, which can be effectively used in wastewater resource recovery.
Precipitation in mountain regions is highly variable and poorly measured, posing important challenges to water resource management. Traditional methods to estimate precipitation include in-situ gauges, Doppler weather radars, satellite radars and radiometers, numerical modeling and reanalysis products. Each of these methods is unable to adequately capture complex orographic precipitation. Here, we propose a novel approach to characterize orographic snowfall over mountain regions. We use a particle batch smoother to leverage satellite information from Sentinel-1 derived snow depth retrievals and to correct various gridded precipitation products. This novel approach is tested using a simple snow model for an alpine basin located in Trentino Alto Adige, Italy. Here, we quantify the precipitation biases across the basin and found that the assimilation method (i) corrects for snowfall biases and uncertainties, (ii) leads to cumulative snowfall elevation patterns that are consistent across precipitation products, and (iii) results in overall improved basin-wide snow variables (snow depth and snow cover area) and basin streamflow estimates.
The chief objective of manufacturing process improvement efforts is to significantly minimize process resources such as time, cost, waste, and consumed energy while improving product quality and process productivity. This paper presents a novel physics-informed optimization approach based on artificial intelligence (AI) to generate digital process twins (DPTs). The utility of the DPT approach is demonstrated in the case of finish machining of aerospace components made from gamma titanium aluminide alloy (γ-TiAl). This particular component has been plagued with persistent quality defects, including surface and sub-surface cracks, which adversely affect resource efficiency. Previous process improvement efforts have been restricted to anecdotal post-mortem investigation and empirical modeling, which fail to address the fundamental issue of how and when cracks occur during cutting. In this work, the integration of in-situ process characterization with modular physics-based models is presented, and machine learning algorithms are used to create a DPT capable of reducing environmental and energy impacts while significantly increasing yield and profitability. Based on the preliminary results presented here, we report an improvement in the overall embodied energy efficiency of over 84%, 93% in process queuing time, 2% in scrap cost, and 93% in queuing cost has been realized for γ-TiAl machining using our novel approach.
The efficiency in harvesting light energy is essential for both crop and feedstock productivity. Key targets for optimization of energy efficiency include energy capture, conversion, translocation and storage. Surprisingly little is known about the mechanisms of carbon allocation and the communication between source and sink. We surmise that regulatory networks that coordinate carbon partitioning and allocation might be control points and thus suitable for optimization by engineering. At a first step towards identifying such regulatory networks, our lab identified key players in missing steps of allocation, specifically cellular sugar uptake (SUT family, founding members identified by my team) and cellular efflux carriers (SWEET superfamily, founding members identified by my team). In plants, both classes of transporters are encoded by multigene families. We show that specific subsets of SWEETs serve critical roles in cellular sucrose efflux in the leaf for phloem loading, in seeds for seed filling, as well as in nectar section and vacuolar storage; similarly SUTs play critical roles in cellular uptake during phloem loading and seed filling. Access to the plant SWEETs provided the clues needed for identifying novel bacterial and human sugar transporters. Moreover, we found that pathogens hijack SWEETs to access the plants energy resources. In contrast to SUTs, which are predominantly proton symporters, SWEETs appear to function as facilitators, and thus must be tightly regulated to prevent spillover of carbon into cell walls. One of the key goals of this project was to identify such carriers, characterize the role of key members in carbon allocation. To decrypt the biological circuits we need novel diagnostic tools that, analogous to oscilloscopes in electrical engineering of circuit boards, allow us to quantify fluxes; here by monitoring sugars. Such probes can provide crucial information on systems properties such as metabolic impedance. To measure steady state metabolite levels with minimal invasive methods, and to develop impedance measurements in vivo, we constructed and optimized a set of probes, namely Förster Resonance Energy Transfer (FRET) nanosensors for glucose and sucrose. The probes monitor the concentration of a specific metabolite with high temporal resolution, and, since encoded genetically, can be targeted to specific cells or even specific cellular compartments and thus obtain measurements with cellular and subcellular resolution. We also developed a new platform for monitoring such sensors in vivo, the RootChip.
Repackaging nuclear material into robust containers to protect workers and the public has been ongoing at LANL and around the DOE complex for nearly two decades. The number of containers at LANL is around 5,000; limited resources for repackaging material has led to extended repackaging campaigns and the need to prioritize repackaging. Various methodologies have been used to prioritize the repackaging efforts and to demonstrate progress in risk reduction over time (e.g., Boerigter, 1997). The 2000-1 DNFSB recommendation recognized the limited DOE resources for repackaging, and acknowledged the need to “prioritize and schedule tasks to be undertaken with available funds according to consideration of risks.” Later, in DNFSB recommendation 2005-1, in addition to recommending that DOE develop a packaging standard, the Board recommended that “Characterization information should also be used to develop a surveillance program prioritized according to expected material and container risk (including, for example, material type, material form, and the age and type of container).” In response to requests and recommendations from the DOE and DNSFB to prioritize according to worker risk, a risk ranking method based on the potential consequence of dropping a container from 3 meters was developed in 2007 (Smith, 2007) and updated in 2014 (Hoffman, 2014). Various LANL implementation plans for repackaging were developed over the years using this methodology (Stone, 2014). Currently, this method is utilized in conjunction with an algorithm to mitigate programmatic risk to prioritize container repackaging and material processing (Prochnow, 2015). The purpose of this study is to document how the current risk ranking method works, how it is used and potential limitations.
Understanding which genes control important crop traits could help scientists develop better bioenergy and food crops more efficiently. However, plant genomes contain tens of thousands of genes, and testing each one individually is expensive and time-consuming. This project developed computational tools to predict which genes are most likely to matter, allowing researchers to focus their efforts where they will have the greatest impact. This project developed and validated integrated approaches combining machine learning, quantitative genetics, and crop growth modeling to improve the efficiency of functional gene characterization in sorghum (Sorghum bicolor), a critical bioenergy and food security crop. The research addressed a fundamental challenge in plant biology: the majority of genes in plant genomes lack experimentally validated functions, making it difficult to prioritize which genes to study using resource-intensive reverse genetics approaches.
The recognition of material resources on a planetary surface requires exploration strategies not dissimilar to those employed by early field geologists who searched for ore deposits primarily from surface clues. In order to determine the location of mineral ores or other materials, it will be necessary to characterize host terranes at regional or subregional scales. This requires geographically broad surveys in which statistically significant numbers of samples are rapidly scanned from a roving platform. To enable broad-scale, yet power-conservative planetary-surface exploration, we are developing an instrument that combines x-ray diffractometry (XRD), x-ray fluorescence spectrometry (XRF), and optical capabilities; the instrument can be deployed at the end of a rover's robotic arm, without the need for sample capture or preparation. The instrument provides XRD data for identification of mineral species and lithological types; diffractometry of minerals is conducted by ascertaining the characteristic lattice parameters or "d-spacings" of mineral compounds. D-spacings of 1.4 to 25 angstroms can be determined to include the large molecular structures of hydrated minerals such as clays. The XRF data will identify elements ranging from carbon (Atomic Number = 6) to elements as heavy as barium (Atomic Number = 56).
The recognition of material resources on a planetary surface requires exploration strategies not dissimilar to those employed by early field geologists who searched for ore deposits primarily from surface clues. In order to determine the location of mineral ores or other materials, it will be necessary to characterize host terranes at regional or subregional scales. This requires geographically broad surveys in which statistically significant numbers of samples are rapidly scanned from a roving platform. To enable broad-scale, yet power-conservative planetary-surface exploration, we are developing an instrument that combines x-ray diffractometry (XRD), x-ray fluorescence spectrometry (XRF), and optical capabilities; the instrument can be deployed at the end of a rover's robotic arm, without the need for sample capture or preparation. The instrument provides XRD data for identification of mineral species and lithological types; diffractometry of minerals is conducted by ascertaining the characteristic lattice parameters or "d-spacings" of mineral compounds. D-spacings of 1.4 to 25 angstroms can be determined to include the large molecular structures of hydrated minerals such as clays. The XRF data will identify elements ranging from carbon (Atomic Number = 6) to elements as heavy as barium (Atomic Number = 56). While a sample is being x-rayed, the instrument simultaneously acquires an optical image of the sample surface at magnifications from lx to at least 50x (200x being feasible, depending on the sample surface). We believe that imaging the sample is extremely important as corroborative sample-identification data (the need for this capability having been illustrated by the experience of the Pathfinder rover). Very few geologists would rely on instrument data for sample identification without having seen the sample. Visual inspection provides critical recognition data such as texture, crystallinity, granularity, porosity, vesicularity, color, lustre, opacity, and so forth. These data can immediately distinguish sedimentary from igneous rocks, for example, and can thus eliminate geochemical or mineral ambiguities arising, say between arkose and granite. It would be important to know if the clay being analyzed was part of a uniform varve deposit laid down in a quiescent lake, or the matrix of a megabreccia diamictite deposited as a catastrophic impact ejecta blanket. The unique design of the instrument, which combines Debye-Scherrer geometry with elements of standard goniometry, negates the need for sample preparation of any kind, and thus negates the need for power-hungry and mechanically-complex sampling systems that would have to chip, crush, sieve, and mount the sample for x-ray analysis. Instead, the instrument is simply rested on the sample surface of interest (like a hand lens); the device can interrogate rough rock surfaces, coarse granular material, or fine rock flour. A breadboard version of the instrument has been deployed from the robotic arm of the Marsokhod rover in field trials at NASA Ames, where large vesicular boulders were x-rayed to demonstrate the functionality of the instrument design, and the ability of such a device to comply with constraints imposed by a roving platform. Currently under development is a flight prototype concept of this instrument that will weigh 0.3 kg, using about 4500 J of energy per sample analysis. It requires about 5 min. for XRD analysis, and about 30 min. for XRF interrogation. Its small mass and rugged design make it ideal for deployment on small rovers of the type currently envisaged for the exploration of Mars (e.g., Sojourner-scale platforms). The design utilizes a monolithic P-N junction photodiode pixel array for XRD, a Si PIN photodiode/avalanche photodiode system for XRF, and an endoscopic imaging camera system unobtrusively embedded between the detectors and the x-ray source (the endoscope with its board-mounted camera can be adapted for IR light in addition to visible wavelenths. A rugged, miniature (7 cu cm) x-ray source for the instrument has already been breadboarded.
For the past 2 years, NASA has invested substantial resources to study the design and performance of the Terrestrial Planet Finder Coronagraph (TPF-C). The work, led by the Jet Propulsion Laboratory with collaboration from Goddard Space Flight Center and several university and commercial entities, encompasses observatory design, performance modeling, materials characterization, primary mirror studies, and a significant technology development effort including a high-contrast imaging testbed that has achieved 1e-9 contrast in a laboratory experiment.
The Landsat series of satellites provides the longest running continuous data set of moderate-spatial-resolution imagery beginning with the launch of Landsat 1 in 1972 and continuing with the 1999 launch of Landsat 7 and current operation of Landsats 5 and 7. The Landsat Data Continuity Mission (LDCM) will continue this program into a fourth decade providing data that are keys to understanding changes in land-use changes and resource management. LDCM consists of a two-sensor platform comprised of the Operational Land Imager (OLI) and Thermal Infrared Sensors (TIRS). A description of the applications and design of the TIRS instrument is given as well as the plans for calibration and characterization. Included are early results from preflight calibration and a description of the inflight validation.
The Planetary Lake Lander Project is studying the impact of rapid deglaciation at a high altitude alpine lake in the Andes, where disrupted environmental, physical, chemical, and biological cycles result in newly emerging natural patterns. The solar powered Lake Lander robot is designed to monitor the lake system and characterize both baseline characteristics and impacts of disturbance events such as storms and landslides. Lake Lander must use an onboard adaptive science-on-the-fly approach to return relevant data about these events to mission control without exceeding limited energy and bandwidth resources. Lake Lander carries weather sensors, cameras and a sonde that is winched up and down the water column to monitor temperature, dissolved oxygen, turbidity and other water quality parameters. Data from Lake Lander is returned via satellite and distributed to an international team of scientists via web-based ground data systems. Here, we describe the Lake Lander Project scientific goals, hardware design, ground data systems, and preliminary data from 2011. The adaptive science-on-the-fly system will be described in future papers.