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At least 1,279 records · Page 71

Dichotomous noise models of gene switches

Molecular noise in gene regulatory networks has two intrinsic components, one part being due to fluctuations caused by the birth and death of protein or mRNA molecules which are often present in small numbers and the other part arising from gene state switching, a single molecule event. Stochastic dynamics of gene regulatory circuits appears to be largely responsible for bifurcations into a set of multi-attractor states that encode different cell phenotypes. The interplay of dichotomous single molecule gene noise with the nonlinear architecture of genetic networks generates rich and complex phenomena. In this paper, we elaborate on an approximate framework that leads to simple hybrid multi-scale schemes well suited for the quantitative exploration of the steady state properties of large-scale cellular genetic circuits. Through a path sum based analysis of trajectory statistics, we elucidate the connection of these hybrid schemes to the underlying master equation and provide a rigorous justification for using dichotomous noise based models to study genetic networks. Numerical simulations of circuit models reveal that the contribution of the genetic noise of single molecule origin to the total noise is significant for a wide range of kinetic regimes.

60 APPLIED LIFE SCIENCES↗

Unipolar resistive switching in metal oxide/organic semiconductor non-volatile memories as a critical phenomenon

Diodes incorporating a bilayer of an organic semiconductor and a wide bandgap metal oxide can show unipolar, non-volatile memory behavior after electroforming. The prolonged bias voltage stress induces defects in the metal oxide with an areal density exceeding 10{sup 17 }m{sup −2}. We explain the electrical bistability by the coexistence of two thermodynamically stable phases at the interface between an organic semiconductor and metal oxide. One phase contains mainly ionized defects and has a low work function, while the other phase has mainly neutral defects and a high work function. In the diodes, domains of the phase with a low work function constitute current filaments. The phase composition and critical temperature are derived from a 2D Ising model as a function of chemical potential. The model predicts filamentary conduction exhibiting a negative differential resistance and nonvolatile memory behavior. The model is expected to be generally applicable to any bilayer system that shows unipolar resistive switching.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Exploiting adiabatically switched RF-field for manipulating spin hyperpolarization induced by parahydrogen

A method for precise manipulation of non-thermal nuclear spin polarization by switching a RF-field is presented. The method harnesses adiabatic correlation of spin states in the rotating frame. A detailed theory behind the technique is outlined; examples of two-spin and three-spin systems prepared in a non-equilibrium state by Para-Hydrogen Induced Polarization (PHIP) are considered. We demonstrate that the method is suitable for converting the initial multiplet polarization of spins into net polarization: compensation of positive and negative lines in nuclear magnetic resonance spectra, which is detrimental when the spectral resolution is low, is avoided. Such a conversion is performed for real two-spin and three-spin systems polarized by means of PHIP. Potential applications of the presented technique are discussed for manipulating PHIP and its recent modification termed signal amplification by reversible exchange as well as for preparing and observing long-lived spin states.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Early stage time evolution of a dense nanosecond microdischarge used in fast optical switching applications

The mechanism of high-voltage nanosecond microdischarges is studied by the self-consistent two-dimensional Particle-in-Cell/Monte Carlo Collisions model. These microdischarges were recently proposed for use as fast switches of visible light in Bataller et al. [Appl. Phys. Lett. 105, 223501 (2014)]. The microdischarge is found to develop in two stages. The first stage is associated with the electrons initially seeded in the cathode-anode gap. These electrons lead to the formation of a cathode-directed streamer. The second stage starts when the secondary electron emission from the cathode begins. In this stage, a rather dense plasma (∼10{sup 16 }cm{sup −3}) is generated which results in the narrow cathode sheath. The electric field in this sheath exceeds the critical electric field which is necessary for the runaway electrons generation. We have found that the presence of these energetic electrons is crucial for the discharge maintenance.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Monolayer MoS{sub 2} self-switching diodes

This paper presents a new molybdenum disulphide (MoS{sub 2}) nanodevice that acts as a two-terminal field-effect rectifier. The device is an atomically-thin two-dimensional self-switching diode (SSD) that can be realized within a single MoS{sub 2} monolayer with very minimal process steps. Quantum simulation results are presented confirming the device's operation as a diode and showing strong non-linear I-V characteristics. Interestingly, the device shows p-type behavior, in which conduction is dominated by holes as majority charge carriers and the flow of reverse current is enhanced, while the flow of forward current is suppressed, in contrast to monolayer graphene SSDs, which behave as n-type devices. The presence of a large bandgap in monolayer MoS{sub 2} results in strong control over the channel, showing complete channel pinch-off in forward conduction, which was confirmed with transmission pathways plots. The device exhibited large leakage tunnelling current through the insulating trenches, which may have been due to the lack of passivation; nevertheless, reverse current remained to be 6 times higher than forward current, showing strong rectification. The effect of p-type substitutional channel doping of sulphur with phosphorus was investigated and showed that it greatly enhances the performance of the device, increasing the reverse-to-forward current rectification ratio more than an order of magnitude, up to a value of 70.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Development of a compact vertical-cavity surface-emitting laser end-pumped actively Q-switched laser for laser-induced breakdown spectroscopy

This paper reports the development of a compact and portable actively Q-switched Nd:YAG laser and its applications in laser-induced breakdown spectroscopy (LIBS). The laser was end-pumped by a vertical-cavity surface-emitting laser (VCSEL). The cavity lases at a wavelength of 1064 nm and produced pulses of 16 ns with a maximum pulse energy of 12.9 mJ. The laser exhibits a reliable performance in terms of pulse-to-pulse stability and timing jitter. The LIBS experiments were carried out using this laser on NIST standard alloy samples. Shot-to-shot LIBS signal stability, crater profile, time evolution of emission spectra, plasma electron density and temperature, and limits of detection were studied and reported in this paper. The test results demonstrate that the VCSEL-pumped solid-state laser is an effective and compact laser tool for laser remote sensing applications.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Persistent-current switch for pancake coils of rare earth-barium-copper-oxide high-temperature superconductor: Design and test results of a double-pancake coil operated in liquid nitrogen (77–65 K) and in solid nitrogen (60–57 K)

We present design and test results of a superconducting persistent current switch (PCS) for pancake coils of rare-earth-barium-copper-oxide, REBCO, high-temperature superconductor (HTS). Here, a REBCO double-pancake (DP) coil, 152-mm ID, 168-mm OD, 12-mm high, was wound with a no-insulation technique. We converted a ∼10-cm long section in the outermost layer of each pancake to a PCS. The DP coil was operated in liquid nitrogen (77–65 K) and in solid nitrogen (60–57 K). Over the operating temperature ranges of this experiment, the normal-state PCS enabled the DP coil to be energized; thereupon, the PCS resumed the superconducting state and the DP coil field decayed with a time constant of 100 h, which would have been nearly infinite, i.e., persistent-mode operation, were the joint across the coil terminals superconducting.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Design considerations for gallium arsenide pulse compression photoconductive switch

In this paper, we present the physics and design-space exploration of a novel pulse compression photoconductive switch (PCPS) using semi-insulating gallium arsenide (GaAs) operating in the negative differential mobility (NDM) regime of electron transport. We systematically quantify the relationship between the PCPS performance and various design options, including contact separation, laser energy and placement, and trap dynamics. Specifically, we report the full-width at half-maximum and the peak output current generated by the PCPS as a function of applied electrical and optical bias. We discuss the optimal spacing between the electrodes and the distance of the laser spot to the anode to achieve higher electron confinement and superior radio-frequency (RF) metrics. Reducing the laser energy is important to prevent the appearance of secondary peaks due to diffusive transport, but there exists a trade-off between the bandwidth and the maximum current of the PCPS. We also compare the PCPS response with and without trap dynamics and find that the electrostatic screening from the trap-induced space charge is time-independent when the trapping time constant is set larger than the recombination lifetime. Overall, trap dynamics are detrimental to performance, unless the compensation doping scheme to achieve semi-insulating GaAs is carefully selected. Results presented in this paper can be used by experimentalists to fine-tune the PCPS design parameters to meet the specifications of various RF applications. Moreover, our results will provide a strong theoretical basis to the measurements of PCPS devices using GaAs and other NDM materials under investigation.

42 ENGINEERING↗

Broad-range tuning of ferroelectric switching of La x Bi 1−x FeO 3 epitaxial films via digital doping using off-axis co-sputtering

To investigate the scope of ferroelectric behavior in La-substituted BiFeO 3 films, La x Bi 1−x FeO 3 epitaxial films were synthesized using off-axis co-sputtering on SrTiO 3 (001) and DyScO 3 (110) substrates with a SrRuO 3 bottom electrode layer. A digital-doping deposition method was used to enable precise control and continuous tuning of La concentration in high-quality LaxBi 1−x FeO 3 films across a wide range of x = 0.05–0.60, which was systematically investigated using piezoresponse force microscopy. Robust and reversible out-of-plane ferroelectric switching has been observed up to x = 0.35, while films with x ≥ 0.37 exhibit no measurable ferroelectric behavior, indicating a sharp ferroelectric-to-paraelectric phase transition between x = 0.35 and 0.37. This represents the highest reported La concentration in LaxBi 1−x FeO 3 films that retains ferroelectric ordering, highlighting opportunities to engineer ferroelectric and multiferroic properties in complex oxide heterostructures.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Highly efficient, versatile, self-Q-switched, high-repetition-rate microchip laser generating Ince–Gaussian modes for optical trapping

Lasers operating in the Ince-Gaussian (IG) mode have potential applications for optical manipulation of microparticles and formation of optical vortices, as well as for optical trapping and optical tweezers. Versatile, self-Q-switched, high-peak-power, high-repetition-rate Cr, Nd:YAG microchip lasers operating in the IG mode are implemented under tilted, tightly focused laser-diode pumping. An average output power of over 2 W is obtained at an absorbed pump power of 6.4 W. The highest optical-to-optical efficiency of 33.2% is achieved at an absorbed pump power of 3.9 W. Laser pulses with a pulse energy of 7.5 μJ, pulse width of 3.5 ns and peak power of over 2 kW are obtained. A repetition rate up to 335 kHz is reached at an absorbed pump power of 5.8 W. Highly efficient, versatile, IG-mode lasers with a high repetition rate and a high peak power ensure a better flexibility in particle manipulation and optical trapping. (control of laser radiation parameters)

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Optical parametric oscillator of mid-IR, visible and UV ranges with synchronous pumping by a Q-switched mode-locked Nd : YAG laser

The parametric generation in a nonlinear PPLN crystal synchronously pumped by a Q-switched mode-locked Nd : YAG laser with a pulse duration of 45 ps is studied. The output pump intensity in the nonlinear crystal reaches ∼10 GW cm{sup -2}. At a pulse repetition rate of 1 kHz, the average output power at the idler wavelength (∼3.6 μm) is ∼12 mW, the peak power is ∼25 kW, and the conversion efficiency (with respect to the absorbed power) is ∼10%. The radiation linewidth at the signal wavelength (∼1.5 μm) is 13 cm{sup -1}. Along with the signal and idler waves, the output emission spectrum contains lines at wavelengths of 822, 754, 624, 532, 463, 442, 392 and 355 nm. The tunable radiation with wavelengths in the vicinity of 392, 463 and 822 nm is observed for the first time. The tuning ranges for the new lines are measured (5 – 10 nm) and their origin is explained. (nonlinear optical phenomena)

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Simulation of an intracavity Q -switched optical parametric oscillator using rate equations

Based on rate equations we have refined the model of an intracavity Q -switched optical parametric oscillator (IOPO) by taking into account the influence of self-Raman stimulated scattering. The rate equations are solved and analysed in the plane-wave approximation for a Gaussian spatial beam distribution profile under various conditions. The spatial rate equations are also solved numerically for a beam with a field distribution of the TEM{sub 00} mode. The numerical analysis shows that stimulated self-Raman scattering leads to a decrease in the output signal power and an increase in the signal pulse width. This model allows one to predict that the output signal power can be increased with increasing ratio of Raman to fundamental photon lifetimes. This suggests a practical method for determining the self-Raman gain coefficient experimentally. In addition, a multi-pulse process for the signal beam of the IOPO can be regenerated by the presented model. However, in comparison with the previous research, the presented model is more accurate and allows one to design and optimise single-resonator IOPOs.The bibliography includes 25 references. (paper)

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Efficient operation of a room-temperature Fe{sup 2+}:ZnSe laser pumped by a passively Q -switched Er:YAG laser

Efficient generation of a train of laser pulses is obtained at room temperature in a Fe{sup 2+}: ZnSe polycrystal pumped by a passively Q -switched Er:YAG laser. The Fe{sup 2+}:ZnSe laser energy reaches 130 mJ at a slope efficiency with respect to the absorbed pump power of 47%. The average pulse repetition rate in the train is ∼100 kHz. (lasers)

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Compact Q-switched Yb : Er laser with a pulse repetition rate of 10 Hz

A compact acousto-optically Q-switched Yb : Er laser emitting 20-ns pulses at λ = 1.5 μm with an energy of 8 mJ and a repetition rate of 10 Hz is developed. The laser radiation divergence at the exit of an optical forming system is 1 mrad. The experimental sample can stably operate in a wide temperature range with unchanged output parameters. The developed laser is 110 × 30 × 30 mm in size taking into account the dimensions of the optical forming system. Life tests demonstrated stable continuous operation of the sample for 50000 pulses. (paper)

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Generation of double giant pulses in actively Q-switched lasers

Generation of a second giant pulse in a longitudinal mode neighbouring to the longitudinal mode possessing minimal losses is theoretically and experimentally studied in actively Q-switched lasers. A mathematical model is suggested for explaining the giant pulse generation in a laser with multiple longitudinal modes. The model makes allowance for not only a standing, but also a running wave for each cavity mode. Results of numerical simulation and data of experiments with a Nd : YLF laser explain the effect of second giant pulse generation in a neighbouring longitudinal mode. After a giant pulse in the mode with minimal losses is generated, the threshold for the neighbouring longitudinal mode is still exceeded due to the effect of burning holes in the population inversion spatial distribution. (paper)

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Generation of controllable Ince – Gaussian modes in a passively Q-switched microchip laser under truncated decentred Gaussian beam pumping

We report a passively Q-switched (PQS) Nd : YAG/Cr{sup 4+}: YAG microchip laser pumped by a truncated decentred Gaussian beam for controllable Ince – Gaussian (IG) mode generation. IG{sup e}(n, n) modes (n = 0, …, 4) are obtained experimentally by choosing the appropriate truncation parameter, which is defined as a ratio of the radius of the aperture to the beam waist. The IG{sup e}(4, 4) mode is produced in the PQS Nd : YAG/Cr{sup 4+}: YAG microchip laser under decentred Gaussian beam pumping at a pump power of 2.6 W, the mode selection being achieved by reducing the truncation parameter. The threshold pump powers for different IG{sup e}(n, n) modes are theoretically calculated to illustrate the mode selection process. The pulsed IG{sup e}(n, n) (n ≥ 1) mode generation with a peak power exceeding 1 kW and a nanosecond pulse width is obtained in the PQS microchip laser, which is a potential laser source for forming flexible vortex arrays for optical tweezers. (control of laser radiation parameters)

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Crystal structure of bacterial cytochrome bc 1 in complex with azoxystrobin reveals a conformational switch of the Rieske iron–sulfur protein subunit

Cytochrome bc 1 complexes (cyt bc 1 ), also known as complex III in mitochondria, are components of the cellular respiratory chain and of the photosynthetic apparatus of non-oxygenic photosynthetic bacteria. They catalyze electron transfer (ET) from ubiquinol to cytochrome c and concomitantly translocate protons across the membrane, contributing to the cross-membrane potential essential for a myriad of cellular activities. This ET-coupled proton translocation reaction requires a gating mechanism that ensures bifurcated electron flow. In this study, we report the observation of the Rieske iron–sulfur protein (ISP) in a mobile state, as revealed by the crystal structure of cyt bc 1 from the photosynthetic bacterium Rhodobacter sphaeroides in complex with the fungicide azoxystrobin. Unlike cyt bc 1 inhibitors stigmatellin and famoxadone that immobilize the ISP, azoxystrobin causes the ISP-ED to separate from the cyt b subunit and to remain in a mobile state. Analysis of anomalous scattering signals from the iron–sulfur cluster of the ISP suggests the existence of a trajectory for electron delivery. This work supports and solidifies the hypothesis that the bimodal conformation switch of the ISP provides a gating mechanism for bifurcated ET, which is essential to the Q-cycle mechanism of cyt bc 1 function.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Structural Analysis of Induction Machine and Switched Reluctance Machine

Presented is a comprehensive analysis of structural performance of Induction Machine (IM) and Switched Reluctance Machine (SRM) rotors under different operational conditions. Electric machines are susceptible to forces of diverse origins. In addition to traditionally considered magnetic and centrifugal forces, this article discusses independent and inclusive effects of thermal expansion and shaft attachment techniques on structural integrity of the machines. A comparative analysis of structural performance of IMs and SRMs has also been performed, under a range of scenarios, to facilitate application specific machine selection from a structural perspective.

42 ENGINEERING↗