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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,279 records · Page 71
All sourcesNASA NTRSDOE OSTI
DOE OSTI2013

Advanced simulation capability for environmental management - current status and future applications

The U.S. Department of Energy (US DOE) Office of Environmental Management (EM), Office of Soil and Groundwater (EM-12), is supporting development of the Advanced Simulation Capability for Environmental Management (ASCEM). ASCEM is a state-of-the-art scientific tool and approach that is currently aimed at understanding and predicting contaminant fate and transport in natural and engineered systems. ASCEM is a modular and open source high-performance computing tool. It will be used to facilitate integrated approaches to modeling and site characterization, and provide robust and standardized assessments of performance and risk for EM cleanup and closure activities. The ASCEM project continues to make significant progress in development of capabilities, with current emphasis on integration of capabilities in FY12. Capability development is occurring for both the Platform and Integrated Tool-sets and High-Performance Computing (HPC) multi-process simulator. The Platform capabilities provide the user interface and tools for end-to-end model development, starting with definition of the conceptual model, management of data for model input, model calibration and uncertainty analysis, and processing of model output, including visualization. The HPC capabilities target increased functionality of process model representations, tool-sets for interaction with Platform, and verification and model confidence testing. The integration of the Platform and HPC capabilities were tested and evaluated for EM applications in a set of demonstrations as part of Site Applications Thrust Area activities in 2012. The current maturity of the ASCEM computational and analysis capabilities has afforded the opportunity for collaborative efforts to develop decision analysis tools to support and optimize radioactive waste disposal. Recent advances in computerized decision analysis frameworks provide the perfect opportunity to bring this capability into ASCEM. This will allow radioactive waste disposal to be evaluated based on decision needs, such as disposal, closure, and maintenance. Decision models will be used in ASCEM to identify information/data needs, and model refinements that might be necessary to effectively reduce uncertainty in waste disposal decisions. Decision analysis models start with tools for framing the problem, and continue with modeling both the science side of the problem (for example, inventories, source terms, fate and transport, receptors, risk, etc.), and the cost side of the problem, which could include costs of implementation of any action that is chosen (e.g., for disposal or closure), and the values associated with those actions. The cost side of the decision problem covers economic, environmental and societal costs, which correspond to the three pillars of sustainability (economic, social, and environmental). These tools will facilitate stakeholder driven decision analysis to support optimal sustainable solutions in ASCEM. In this paper the current state of ASCEM is first described, followed by a description of the approach that will be taken to augment ASCEM for simulating fate and transport with tools that facilitate a top-down or systems level view of finding optimal, sustainable solutions to difficult environmental (including radioactive waste) problems. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2018

Methods and systems for generating a continuous helical tool path for parts having multiple central axes

A computer-implemented method for generating a continuous helical tool path for forming a part having a plurality of central axes is provided. The method includes performing a tool path algorithm modeling and a tool path algorithm execution using a computer system. The tool path algorithm modeling includes defining a starting point location within a computer-generated three-dimensional part geometry model, defining a vector, defining a helix, defining a sweeping surface three-dimensional geometry element, and generating an intersection curve from tracing a continuous curved line of an intersection between the sweeping surface geometry element and the part geometry model. The tool path algorithm execution includes defining data for a forming tool stylus, selecting the intersection curve as a guiding element for the forming tool stylus, and generating the continuous helical tool path for the forming tool stylus. The continuous helical tool path includes a forming tool stylus centerline path in graphical space.

42 ENGINEERING↗
DOE OSTI2025

Performance Impact and Trade-Offs for Tuning Key Architectural Parameters on CPU+GPU Systems

In this work, we performed an initial design space exploration of an accelerated processing unit (APU)—a hybrid CPU+GPU architecture that integrates both compute units (CUs) and memory into a unified system. This integration aims to reduce data movement, enhance memory locality, and improve energy efficiency by enabling the CPU and GPU to share memory directly. This effort focused on the interplay of key design components—cache line size, the number of CUs, and main memory technology—and the trade-offs of each configuration were analyzed. This paper highlights the various configurations’ impact on memory accesses, data reuse, and power utilization. The results provide valuable insights that can be leveraged to optimize APU architectures for high-performance and energy-efficient computing and thus create a balanced architecture. This optimization can be achieved by adopting dynamic cache management, runtime CU scaling, and advanced memory integration, highlighting the potential of APUs to address critical challenges in compute, data movement, and memory power consumption.

Asifuzzaman, Kazi [ORNL] (ORCID:0000000240044791)↗
DOE OSTI2016

Many-Core Acceleration of a Discrete Ordinates Transport Mini-App at Extreme Scale, In: ISC High Performance 2016: High Performance Computing

Time-dependent deterministic discrete ordinates transport codes are an important class of application which provide significant challenges for large, many-core systems. One such challenge is the large memory capacity needed by the solve step, which requires us to have a scalable solution in order to have enough node-level memory to store all the data. In our previous work, we demonstrated the first implementation which showed a significant performance benefit for single node solves using GPUs. In this paper we extend our work to large problems and demonstrate the scalability of our solution on two Petascale GPU-based supercomputers: Titan at Oak Ridge and Piz Daint at CSCS. Our results show that our improved node-level parallelism scheme scales just as well across large systems as previous approaches when using the tried and tested KBA domain decomposition technique. We validate our results against an improved performance model which predicts the runtime of the main ‘sweep’ routine when running on different hardware, including CPUs or GPUs.

Computer Science↗
DOE OSTI2013

Pore-Scale Simulation of Intragranular Diffusion: Effects of Incomplete Mixing on Macroscopic Manifestations

Diffusive mass transfer into and out of intragranular micropores ("intragranular diffusion") plays an important role in the large-scale transport of some groundwater contaminants. We are interested in understanding the combined effect of pore-scale advection and intragranular diffusion on solute transport at the effective porous medium scale. To study this problem, we have developed a three-dimensional pore-scale model of fluid flow and solute transport that incorporates diffusion into and out of intragranular pore spaces. Our model is based on the Smoothed Particle Hydrodynamics (SPH) simulation method, which represents fluid and solid phases by a mesh-free particle discretization. In the pore spaces, fluid flow is simulated by discretizing the Navier-Stokes equations using the SPH approach. Solute transport is represented by advection, diffusion within the fluid phase, and diffusion between the fluid and solid phases. Our model is implemented on large-scale parallel computing hardware, allowing us to simulate millions of computational particles and represent fully three-dimensional systems of pores and grains with arbitrarily complex physical geometry. We have used this model system to perform numerical experiments using various model porous media systems, which allows us to draw comparisons between macroscopic measures computed from the pore-scale simulations (such as breakthrough curves) and those predicted by macroscopic formulations that assume complete mixing over the representative volume. In this paper we present results of 3D simulations of pore-scale flow and transport, including cases with and without intragranular diffusion, in two model porous media, one with randomly-packed uniform spherical grains and a second with randomly-packed spheres drawn from a binary grain size distribution. Breakthrough curves were computed from the 3D simulations at various transport distances. Comparable breakthrough curves were computed using 1D macroscopic models with parameters determined independently to the degree possible. Based on comparisons of the pore-scale and macroscopic model results, we draw two primary conclusions. First, non-Fickian behavior is persistent and ubiquitous at the scales considered, and most cases are better represented by a multi-rate mass transfer model even when there is no distinct secondary porosity (i.e., no intragranular diffusion). This suggests that diffusive mass transfer processes between preferential flow paths and relatively immobile zones within the primary porosity may have significant impact on transport, particular in low-concentration tails. Second, the application of mass transfer rate parameters based on an assumption of well-mixed concentrations at the pore-scale tend to overestimate the amount of mass transfer that occurs in heterogeneous pore geometries in which preferential flow leads to incomplete pore-scale lateral mixing.

Environmental Molecular Sciences Laboratory↗
DOE OSTI2017

Thermosyphon Cooler Hybrid System for Water Savings in an Energy-Efficient HPC Data Center: Modeling and Installation: Preprint

The Thermosyphon Cooler Hybrid System (TCHS) integrates the control of a dry heat rejection device, the thermosyphon cooler (TSC), with an open cooling tower. A combination of equipment and controls, this new heat rejection system embraces the 'smart use of water,' using evaporative cooling when it is most advantageous and then saving water and modulating toward increased dry sensible cooling as system operations and ambient weather conditions permit. Innovative fan control strategies ensure the most economical balance between water savings and parasitic fan energy. The unique low-pressure-drop design of the TSC allows water to be cooled directly by the TSC evaporator without risk of bursting tubes in subfreezing ambient conditions. Johnson Controls partnered with the National Renewable Energy Laboratory (NREL) and Sandia National Laboratories to deploy the TSC as a test bed at NREL's high-performance computing (HPC) data center in the first half of 2016. Located in NREL's Energy Systems Integration Facility (ESIF), this HPC data center has achieved an annualized average power usage effectiveness rating of 1.06 or better since 2012. Warm-water liquid cooling is used to capture heat generated by computer systems direct to water; that waste heat is either reused as the primary heat source in the ESIF building or rejected using evaporative cooling. This data center is the single largest source of water and power demand on the NREL campus, using about 7,600 m3 (2.0 million gal) of water during the past year with an hourly average IT load of nearly 1 MW (3.4 million Btu/h) -- so dramatically reducing water use while continuing efficient data center operations is of significant interest. Because Sandia's climate is similar to NREL's, this new heat rejection system being deployed at NREL has gained interest at Sandia. Sandia's data centers utilize an hourly average of 8.5 MW (29 million Btu/h) and are also one of the largest consumers of water on Sandia's site. In addition to describing the installation of the TSC and its integration into the ESIF, this paper focuses on the full heat rejection system simulation program used for hourly analysis of the energy and water consumption of the complete system under varying operating scenarios. A follow-up paper will detail the test results. The evaluation of the TSC's performance at NREL will also determine a path forward at Sandia for possible deployment in a large-scale system not only for data center use but also possibly site wide.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2015

DGDFT: A massively parallel method for large scale density functional theory calculations

We describe a massively parallel implementation of the recently developed discontinuous Galerkin density functional theory (DGDFT) method, for efficient large-scale Kohn-Sham DFT based electronic structure calculations. The DGDFT method uses adaptive local basis (ALB) functions generated on-the-fly during the self-consistent field iteration to represent the solution to the Kohn-Sham equations. The use of the ALB set provides a systematic way to improve the accuracy of the approximation. By using the pole expansion and selected inversion technique to compute electron density, energy, and atomic forces, we can make the computational complexity of DGDFT scale at most quadratically with respect to the number of electrons for both insulating and metallic systems. We show that for the two-dimensional (2D) phosphorene systems studied here, using 37 basis functions per atom allows us to reach an accuracy level of 1.3 × 10{sup −4} Hartree/atom in terms of the error of energy and 6.2 × 10{sup −4} Hartree/bohr in terms of the error of atomic force, respectively. DGDFT can achieve 80% parallel efficiency on 128,000 high performance computing cores when it is used to study the electronic structure of 2D phosphorene systems with 3500-14 000 atoms. This high parallel efficiency results from a two-level parallelization scheme that we will describe in detail.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2013

Performance and scalability evaluation of the Ceph parallel file system. In: PDSW '13 Proceedings of the 8th Parallel Data Storage Workshop

Ceph is an emerging open-source parallel distributed file and storage system. By design, Ceph leverages unreliable commodity storage and network hardware, and provides reliability and fault-tolerance via controlled object placement and data replication. This paper presents our file and block I/O performance and scalability evaluation of Ceph for scientific high-performance computing (HPC) environments. Our work makes two unique contributions. First, our evaluation is performed under a realistic setup for a large-scale capability HPC environment using a commercial high-end storage system. Second, our path of investigation, tuning efforts, and findings made direct contributions to Ceph's development and improved code quality, scalability, and performance. These changes should benefit both Ceph and the HPC community at large.

Wang, Feiyi↗
DOE OSTI2015

Strategy and gaps for modeling, simulation, and control of hybrid systems

The purpose of this report is to establish a strategy for modeling and simulation of candidate hybrid energy systems. Modeling and simulation is necessary to design, evaluate, and optimize the system technical and economic performance. Accordingly, this report first establishes the simulation requirements to analysis candidate hybrid systems. Simulation fidelity levels are established based on the temporal scale, real and synthetic data availability or needs, solution accuracy, and output parameters needed to evaluate case-specific figures of merit. Accordingly, the associated computational and co-simulation resources needed are established; including physical models when needed, code assembly and integrated solutions platforms, mathematical solvers, and data processing. This report first attempts to describe the figures of merit, systems requirements, and constraints that are necessary and sufficient to characterize the grid and hybrid systems behavior and market interactions. Loss of Load Probability (LOLP) and effective cost of Effective Cost of Energy (ECE), as opposed to the standard Levelized Cost of Electricty (LCOE), are introduced as technical and economical indices for integrated energy system evaluations. Financial assessment methods are subsequently introduced for evaluation of non-traditional, hybrid energy systems. Algorithms for coupled and iterative evaluation of the technical and economic performance are subsequently discussed. This report further defines modeling objectives, computational tools, solution approaches, and real-time data collection and processing (in some cases using real test units) that will be required to model, co-simulate, and optimize; (a) an energy system components (e.g., power generation unit, chemical process, electricity management unit), (b) system domains (e.g., thermal, electrical or chemical energy generation, conversion, and transport), and (c) systems control modules. Co-simulation of complex, tightly coupled, dynamic energy systems requires multiple simulation tools, potentially developed in several programming languages and resolved on separate time scales. Whereas further investigation and development of hybrid concepts will provide a more complete understanding of the joint computational and physical modeling needs, this report highlights areas in which co-simulation capabilities are warranted. The current development status, quality assurance, availability and maintainability of simulation tools that are currently available for hybrid systems modeling is presented. Existing gaps in the modeling and simulation toolsets and development needs are subsequently discussed. This effort will feed into a broader Roadmap activity for designing, developing, and demonstrating hybrid energy systems.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2012

Runtime Tracing of the Community Earth System Model: Feasibility Study and Benefits

The Community Earth System Model (CESM) is one of US's leading earth system modeling frameworks, which has decades of development history and was embraced by a large, active user community. In this paper, we first review the software development history of CESM and we explain the general objectives of performance analysis. Then we present an offline global community land model simulation within the CESM framework to demonstrate the procedure of runtime tracing of CESM using the Vampir toolset. Finally, we explain the benefits of runtime tracing to the general earth system modeling community. We hope those considerations can be beneficial to many other modeling research programs involving legacy high-performance computing applications.

42 ENGINEERING↗
DOE OSTI2021

cuZ-Checker: A GPU-Based Ultra-Fast Assessment System for Lossy Compressions

Lossy compression is becoming an indispensable technique for the success of today's extreme-scale high-performance computing projects that produce vast volumes of data during scientific simulations or instrument data acquisitions. Comprehensively understanding the compression quality and performance of different lossy compressors is critical to selecting the best-fit compressors and using them properly and efficiently in practice. A few lossy compression assessment tools (e.g., Z-checker) have been developed, but none of them support the execution in a GPU environment. This is a significant gap because many recent extreme-scale applications and lossy compressors (e.g., cuSZ) can run entirely within GPUs. In this work, we develop an efficient lossy compression measuring system (called cuZ-Checker) on the GPU platform, which aims to perform the lossy compression quality and performance assessment completely within the GPU environment. Our contribution is threefold. (1) We develop a novel GPU-based lossy compression measuring framework using a computation pattern-based design approach. This approach classifies the computing-intensive metrics into three categories based on their patterns which creates large opportunities for kernel fusion and data reuse. (2) For each pattern in cuZ-Checker, we develop a CUDA kernel and provide fine-grained optimizations to boost its performance. (3) We thoroughly evaluate our cuZ-checker on a V100 GPU using four real-world scientific application datasets. Experiments show that cuZ-Checker can significantly accelerate the overall lossy compression assessment performance by 23X similar to 31X compared with the OpenMP-based multithreading CPU performance. To the best of our knowledge, this is the first lossy compression measuring system designed for GPU devices.

GPU↗
DOE OSTI2016

OVERVIEW OF THE SAPHIRE PROBABILISTIC RISK ANALYSIS SOFTWARE

The Systems Analysis Programs for Hands-on Integrated Reliability Evaluations (SAPHIRE) is a software application developed for performing a complete probabilistic risk assessment (PRA) using a personal computer (PC) running the Microsoft Windows operating system. SAPHIRE Version 8 is funded by the U.S. Nuclear Regulatory Commission (NRC) and developed by the Idaho National Laboratory (INL). INL's primary role in this project is that of software developer and tester. However, INL also plays an important role in technology transfer by interfacing and supporting SAPHIRE users, who constitute a wide range of PRA practitioners from the NRC, national laboratories, the private sector, and foreign countries. In this paper, we provide an overview of the current technical capabilities found in SAPHIRE Version 8, including the user interface and enhanced solving algorithms.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2019

Heterogeneous CPU+GPU-Enabled Simulations for DFTB Molecular Dynamics of Large Chemical and Biological Systems

We introduce a new heterogeneous CPU+GPU-enhanced DFTB approach for the routine and efficient simulation of large chemical and biological systems. Here, compared to homogenous computing with conventional CPUs, heterogeneous computing approaches exhibit substantial performance with only a modest increase in power consumption, both of which are essential to upcoming exascale computing initiatives. We show that DFTB-based molecular dynamics is a natural candidate for heterogeneous computing since the computational bottleneck in these simulations is the diagonalization of the Hamiltonian matrix, which is performed several times during a single molecular dynamics trajectory. To thoroughly test and understand the performance of our heterogeneous CPU+GPU approach, we examine a variety of algorithmic implementations, benchmarks of different hardware configurations, and applications of this methodology on several large chemical and biological systems. Finally, to demonstrate the capability of our implementation, we conclude with a large-scale DFTB MD simulation of explicitly solvated HIV protease (3,974 atoms total) as a proof-of-concept example of an extremely large/complex system which, to the best of our knowledge, is the first time that an entire explicitly-solvated protein has been treated at a quantum-based MD level of detail.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2020

Multiphysics for nuclear energy applications using a cohesive computational framework

With the recent development of advanced numerical algorithms, software design, and low-cost high-performance computer hardware, reliance on coupled multiphysics to predict the behavior of complex physical systems is beginning to become standard practice. This is especially true in nuclear energy applications where strong nonlinear interdependencies exist between reactor physics, radiation transport, multi-scale nuclear fuels performance, thermal fluids, etc. Resolving these nonlinear dependencies requires choices in multiphysics software approaches. Two main multiphysics modeling and simulation approaches have emerged. The first is based upon "code coupling" where disparate physics codes of different software design, code languages, and spatial and temporal integration schemes are coupled together with relatively complex data passing interfaces. The second multiphysics software approach is to employ a "cohesive" framework where all physics applications are developed with a common software design, i.e., data structures, syntax, input format, integrated spatial and temporal discretization schemes, etc. In this paper we present the Multiphysics Object-Oriented Simulation Environment (MOOSE) development and runtime framework and describe the framework's cohesive modeling and simulation multiphysics approach. Then, a "cohesive-like" extension of the MOOSE framework is presented where MOOSE-based physics software applications are efficiently coupled to non-MOOSE (external) physics codes to form multiphysics applications using MOOSE's unique interface capabilities. Finally, several examples of MOOSE's cohesive and cohesive-like multiphysics applications will be demonstrated. These multiphysics demonstrations will incorporate both MOOSE-based applications and external codes, including Nek5000, RELAP-7, TRACE, BISON, and Pronghorn.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2015

On the Impact of Execution Models: A Case Study in Computational Chemistry

Efficient utilization of high-performance computing (HPC) platforms is an important and complex problem. Execution models, abstract descriptions of the dynamic runtime behavior of the execution stack, have significant impact on the utilization of HPC systems. Using a computational chemistry kernel as a case study and a wide variety of execution models combined with load balancing techniques, we explore the impact of execution models on the utilization of an HPC system. We demonstrate a 50 percent improvement in performance by using work stealing relative to a more traditional static scheduling approach. We also use a novel semi-matching technique for load balancing that has comparable performance to a traditional hypergraph-based partitioning implementation, which is computationally expensive. Using this study, we found that execution model design choices and assumptions can limit critical optimizations such as global, dynamic load balancing and finding the correct balance between available work units and different system and runtime overheads. With the emergence of multi- and many-core architectures and the consequent growth in the complexity of HPC platforms, we believe that these lessons will be beneficial to researchers tuning diverse applications on modern HPC platforms, especially on emerging dynamic platforms with energy-induced performance variability.

Execution models, computational chemistry, MPI and↗
DOE OSTI2016

GPU acceleration of the Locally Selfconsistent Multiple Scattering code for first principles calculation of the ground state and statistical physics of materials

The Locally Self-consistent Multiple Scattering (LSMS) code solves the first principles Density Functional theory Kohn–Sham equation for a wide range of materials with a special focus on metals, alloys and metallic nano-structures. It has traditionally exhibited near perfect scalability on massively parallel high performance computer architectures. In this paper, we present our efforts to exploit GPUs to accelerate the LSMS code to enable first principles calculations of O(100,000) atoms and statistical physics sampling of finite temperature properties. We reimplement the scattering matrix calculation for GPUs with a block matrix inversion algorithm that only uses accelerator memory. Finally, using the Cray XK7 system Titan at the Oak Ridge Leadership Computing Facility we achieve a sustained performance of 14.5PFlop/s and a speedup of 8.6 compared to the CPU only code.

36 MATERIALS SCIENCE↗
DOE OSTI2017

Tuning HDF5 subfiling performance on parallel file systems

Subfiling is a technique used on parallel file systems to reduce locking and contention issues when multiple compute nodes interact with the same storage target node. Subfiling provides a compromise between the single shared file approach that instigates the lock contention problems on parallel file systems and having one file per process, which results in generating a massive and unmanageable number of files. In this paper, we evaluate and tune the performance of recently implemented subfiling feature in HDF5. In specific, we explain the implementation strategy of subfiling feature in HDF5, provide examples of using the feature, and evaluate and tune parallel I/O performance of this feature with parallel file systems of the Cray XC40 system at NERSC (Cori) that include a burst buffer storage and a Lustre disk-based storage. We also evaluate I/O performance on the Cray XC30 system, Edison, at NERSC. Our results show performance benefits of 1.2X to 6X performance advantage with subfiling compared to writing a single shared HDF5 file. We present our exploration of configurations, such as the number of subfiles and the number of Lustre storage targets to storing files, as optimization parameters to obtain superior I/O performance. Based on this exploration, we discuss recommendations for achieving good I/O performance as well as limitations with using the subfiling feature.

97 MATHEMATICS AND COMPUTING↗