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NASA NTRS1991

Space life support engineering program

This report covers the first six months of work performed under the NASA University Grant awarded to Iowa State University to perform research on two topics relating to the development of closed-loop long-term life support systems. A comprehensive study to develop software to simulate the dynamic operation of water reclamation systems in long-term closed-loop life support systems is being carried out as part of an overall program for the design of systems for a Mars voyage. This project is being done in parallel with a similar effort in the Department of Chemistry to develop durable accurate low-cost sensors for monitoring of trace chemical and biological species in recycled water supplies. Aspen-Plus software is being used on a group of high-performance workstations to develop the steady state descriptions for a number of existing technologies. Following completion, a dynamic simulation package will be developed for determining the response of such systems to changes in the metabolic needs of the crew and to upsets in system hardware performance.

Seagrave, Richard C.↗
NASA NTRS1993

Thermophysical properties of simple liquid metals: A brief review of theory

In this paper, we review the current theory of the thermophysical properties of simple liquid metals. The emphasis is on thermodynamic properties, but we also briefly discuss the nonequilibrium properties of liquid metals. We begin by defining a 'simple liquid metal' as one in which the valence electrons interact only weakly with the ionic cores, so that the interaction can be treated by perturbation theory. We then write down the equilibrium Hamiltonian of a liquid metal as a sum of five terms: the bare ion-ion interaction, the electron-electron interaction, the bare electron-ion interaction, and the kinetic energies of electrons and ions. Since the electron-ion interaction can be treated by perturbation, the electronic part contributes in two ways to the Helmholtz free energy: it gives a density-dependent term which is independent of the arrangement of ions, and it acts to screen the ion-ion interaction, giving rise to effective ion-ion pair potentials which are density-dependent, in general. After sketching the form of a typical pair potential, we briefly enumerate some methods for calculating the ionic distribution function and hence the Helmholtz free energy of the liquid: monte Carlo simulations, molecular dynamics simulations, and thermodynamic perturbation theory. The final result is a general expression for the Helmholtz free energy of the liquid metal. It can be used to calculate a wide range of thermodynamic properties of simple metal liquids, which we enumerate. They include not only a range of thermodynamic coefficients of both metals and alloys, but also many aspects of the phase diagram, including freezing curves of pure elements and phase diagrams of liquid alloys (including liquidus and solidus curves). We briefly mention some key discoveries resulting from previous applications of this method, and point out that the same methods work for other materials not normally considered to be liquid metals (such as colloidal suspensions, in which the suspended microspheres behave like ions screened by the salt solution in which they are suspended). We conclude with a brief discussion of some non-equilibrium (i.e., transport) properties which can be treated by an extension of these methods. These include electrical resistivity, thermal conductivity, viscosity, atomic self-diffusion coefficients, concentration diffusion coefficients in alloys, surface tension and thermal emissivity. Finally, we briefly mention two methods by which the theory might be extended to non-simple liquid metals: these are empirical techniques (i.e., empirical two- and three-body potentials), and numerical many-body approaches. Both may be potentially applicable to extremely complex systems, such as nonstoichiometric liquid semiconductor alloys.

Stroud, David↗
NASA NTRS2001

Ranges of Applicability for the Continuum-beam Model in the Constitutive Analysis of Carbon Nanotubes: Nanotubes or Nano-beams?

Ranges of validity for the continuum-beam model, the length-scale effects and continuum assumptions are analyzed in the framework of scaling analysis of NT structure. Two coupled criteria for the applicability of the continuum model are presented. Scaling analysis of NT buckling and geometric parameters (e.g., diameter and length) is carried out to determine the key non-dimensional parameters that control the buckling strains and modes of NT buckling. A model applicability map, which represents two classes of NTs, is constructed in the space of non-dimensional parameters. In an analogy with continuum mechanics, a mechanical law of geometric similitude is presented for two classes of beam-like NTs having different geometries. Expressions for the critical buckling loads and strains are tailored for the distinct groups of NTs and compared with the data provided by the molecular dynamics simulations. Implications for molecular dynamics simulations and the NT-based scanning probes are discussed.

Harik, Vasyl Michael↗
NASA NTRS2021

Comparing Theoretically Scaled Biomechanical Models

BACKGROUND An investigation into incorporating space suit aspects required a 50th-percentile male model which was not part of the existing dataset of models. Previously, theoretical models for 5th-percentile female and 95th-percentile male were created utilizing a scaled test subject as close as possible to the target height and weight. Scaling factors were created by taking the height ratio and applying it uniformly to the model body segments, then fine tuning to ensure the theoretical model’s height is as expected. This study was initiated to examine the existing method of isometrically scaling in OpenSim [1,2] and to create alternative methods which do not rely on an existing subject being close in height and weight to the theoretical model of interest. Generating a theoretical biomechanical model provides additional abilities without the reliance on available OpenSim models or real subjects. Gained abilities include creating different percentile models and attaining representative anthropometry for any target height/weight, such as targeting specific crew populations or gaps within the current dataset. METHODS AND RESULTS This study includes 3 methods for generating the theoretical model; utilizing the modified unscaled OpenSim Full Body Rajagopal Model (FBRM) [3,4], a dataset of scaled OpenSim models, and existing scaling factors from Dumas et al. [5]. All methods use the Anthropometric Survey of US Army Personnel (ANSUR II) [6] as an input of necessary anthropometric measurements. The following measurements are retrieved from the ANSUR II collection: mass, stature, cervicale height, acromial height, axilla height, waist height, trochanterion height, lateral femoral epicondyle height, lateral malleolus height, acromion-radiale length, radiale-stylion length, palm length, ball of foot length, bicristal breadth, bimalleolar breadth. Some of the measurements are direct segment lengths and others are utilized to derive segment lengths. Height, weight, and age ranges are the required inputs to parse the collection for a mean value of the measurements. A simple iterative process may be necessary for the output of mean mass and stature consistent with the theoretical model of interest. In some cases, one may specify exact values instead of a range but that is dependent upon whether those exact values pertain to a single subject from the ANSUR II collection. Equations from Dumas et al. were used to calculate scaling factors for the two methods that utilize OpenSim scaled and unscaled models. In the third method, Dumas’ scaling factors were used directly instead of generating our own. After scaling factors are achieved, they are applied along with the mass and segment lengths retrieved from ANSUR II in order to calculate the segment mass, Center of Mass (CoM), mass Moment of Inertia (MoI), and the joint location in the parent frame. The theoretical models from the different methods were compared to the previous existing method of isometrically scaling in OpenSim, as well as the standards found in NASA STD-3000 [7] and the NASA Human Integration Design Handbook [8]. The whole-body center of mass is the main comparison performed between the models and the standards. The body segment mass properties were also compared when possible. In some cases, the standards do not provide complete data, or the center of mass location is not provided with respect to the appropriate joint coordinate system. For a 50th-percentile male subject, results from isometric scaling in OpenSim and the method utilizing the unscaled FBRM were compared to the standards in NASA STD-3000. According to the standard, the whole-body vertical CoM location was taken from the head vertex to the CoM. The standards provide 80.2 cm for the CoM vertical component whereas isometric scaling in OpenSim and utilizing the unscaled FBRM provide 82.2 and 82.3 cm, respectively. Through definition, the whole-body CoM in the medial/lateral direction agreed across the models. Investigation is on-going to clearly identify the reference point pertaining to dorsal/ventral whole-body CoM position in standards and relate that to the theoretical models. REFERENCES [1] Delp, S.L., et al., “OpenSim: Open-source Software to Create and Analyze Dynamic Simulations of Movement”, IEEE Transactions on Biomedical Engineering, (2007). [2] Seth, A., Hicks J.L., Uchida, T.K., Habib, A., Dembia, C.L., Dunne, J.J., Ong, C.F., DeMers, M.S., Rajagopal, A., Millard, M., Hamner, S.R., Arnold, E.M., Yong, J.R., Lakshmikanth, S.K., Sherman,n M.A., Delp, S.L. OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement. Plos Computational Biology, 14(7). (2018) [3] R. K. Huffman, W. K. Thompson, C. A. Gallo, L. J. Quiocho, “Improvement of Scaling and Inverse Kinematic Results with Additional Upper Body Joints Added to Opensim Rajagopal Model”, NASA Human Research Program Investigator’s Workshop, (2019). [4] Huffman R.K., Thompson W., Gallo C., “Modified OpenSim Rajagopal Full Body Model”, New Technology Report, MSC-26872-1. (August 2020). [5] Dumas R., Cheze L. and Verriest J., 2007. “Adjustments to McConville et al. and Young et al. body segment inertial parameters”. Journal of Biomechanics 40, pp. 543-553 [6] Gordon C.C., 2012 “Anthropometric Survey of U.S. Army Personnel: Methods and Summary Statistics”, US Army Natick Soldier RD&E Center. [7] NASA STD-3000/REV-B, 1995. “The Man-System Integration Standards” [8] NASA/SP-2010-3407/REV-1, 2014. “The Human Integration Design Handbook (HIDH)”

F N Matari↗
NASA NTRSDate not supplied

A Methodology for Actuating RCS Jets in a Continuous, Time-Accurate CFD Simulation

Computational fluid dynamics simulations of Mars entry vehicle reaction control systems have been used to gain a better understanding of the wide range of flow phenomena encountered during various phases of flight. One aspect of this is simulating the system during controlled flight. Current practices model the system in a continuously actuated state, but this methodology is unable to accurately model the dynamic behavior of the system during EDL. One method to improve this is to create a coupled CFD-RBD-Control simulation. The first step to this is establishing a method of accurately actuating an RCS jet during a time accurate CFD simulation. This paper presents a method to achieve this actuation. There are three phases to the methodology: establishing the off state, creating a ramping function that will initialize the jet flow, and establishing the on state. A test case of a jet in a supersonic crossflow is implemented to establish the success of the methodology in being able to actuate a jet in the midst of an ongoing CFD simulation. It shows significant improvement in boundary condition responsiveness for linear and exponential ramping functions in comparison to the step function. A preliminary demonstration of the methodology is presented for the MSL vehicle which shows significant advantages for the implementation of a linear ramping function over a step function.

Alexandra Hickey↗
NASA NTRSDate not supplied

A Methodology for Actuating RCS Jets in a Continuous, Time-Accurate CFD Simulation

Computational fluid dynamics simulations of Mars entry vehicle reaction control systems have been used to gain a better understanding of the wide range of flow phenomena encountered during various phases of flight. One aspect of this is simulating the system during controlled flight. Current practices model the system in a continuously actuated state, but this methodology is unable to accurately model the dynamic behavior of the system during EDL. One method to improve this is to create a coupled CFD-RBD-Control simulation. The first step to this is establishing a method of accurately actuating an RCS jet during a time accurate CFD simulation. This paper presents a method to achieve this actuation. There are three phases to the methodology: establishing the off state, creating a ramping function that will initialize the jet flow, and establishing the on state. A test case of a jet in a supersonic crossflow is implemented to establish the success of the methodology in being able to actuate a jet in the midst of an ongoing CFD simulation. It shows significant improvement in boundary condition responsiveness for linear and exponential ramping functions in comparison to the step function. A preliminary demonstration of the methodology is presented for the MSL vehicle which shows significant advantages for the implementation of a linear ramping function over a step function.

Alexandra Hickey↗
DOE OSTI2020

Machine learning for collective variable discovery and enhanced sampling in biomolecular simulation

Classical molecular dynamics simulates the time evolution of molecular systems through the phase space spanned by the positions and velocities of the constituent atoms. Molecular-level thermodynamic, kinetic, and structural data extracted from the resulting trajectories provide valuable information for the understanding, engineering, and design of biological and molecular materials. The cost of simulating many-body atomic systems makes simulations of large molecules prohibitively expensive, and the high-dimensionality of the resulting trajectories presents a challenge for analysis. Driven by advances in algorithms, hardware, and data availability, there has been a flare of interest in recent years in the applications of machine learning – especially deep learning – to molecular simulation. Furthermore, these techniques have demonstrated great power and flexibility in both extracting mechanistic understanding of the important nonlinear collective variables governing the dynamics of a molecular system, and in furnishing good low-dimensional system representations with which to perform enhanced sampling or develop long-timescale dynamical models. It is the purpose of this article to introduce the key machine learning approaches, describe how they are married with statistical mechanical theory into domain-specific tools, and detail applications of these approaches in understanding and accelerating biomolecular simulation.

74 ATOMIC AND MOLECULAR PHYSICS↗
NASA NTRS1977

Real-time dynamic spacecraft simulation

This paper presents experience in designing and implementing a fully interactive real-time dynamic spacecraft simulation software system for the International Ultraviolet Explorer (IUE) satellite to be launched by NASA. The primary objective for this simulator, called SIMIUE, is to help train the IUE Operations Control Center personnel in the dynamic commanding and operations of the IUE spacecraft. It is felt that the approach taken in developing SIMIUE will prove to be largely valid for spacecraft training simulators to be developed for future satellites. For this reason discussion of those aspects of SIMIUE which relate specifically to the IUE satellite has been kept to a minimum.

Macker, A. J.↗
DOE OSTI2018

Quantifying Power Distribution System Resiliency Using Code-Based Metric

It is essential to improve the resiliency of power distribution systems (PDS) with the increase in extreme weather events, number of malicious threats and consumers’ need for higher reliability. Here, this paper provides a formal approach to evaluate the operational resiliency of PDS, and quantify the resiliency of a system using a code-based metric. A combination of steady state and dynamic simulation tools is used to determine the resiliency metric. Dynamic simulation tools help with analyzing impact of short-term events, which might affect operational resiliency in long term. A dynamic optimization algorithm for changing operating criteria to increase the sustainability of the most critical loads has been proposed. The proposed theoretical approach is validated using a simple power distribution system model and simulation results demonstrate the ability to quantify the resiliency using the proposed code-based metric. The time-dependent quantification of resiliency has been demonstrated on a test system of two connected CERTS microgrids.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2017

Open-source framework for power system transmission and distribution dynamics co-simulation

The promise of the smart grid entails more interactions between the transmission and distribution networks, and there is an immediate need for tools to provide the comprehensive modelling and simulation required to integrate operations at both transmission and distribution levels. Existing electromagnetic transient simulators can perform simulations with integration of transmission and distribution systems, but the computational burden is high for large-scale system analysis. For transient stability analysis, currently there are only separate tools for simulating transient dynamics of the transmission and distribution systems. In this paper, we introduce an open source co-simulation framework “Framework for Network Co-Simulation” (FNCS), together with the decoupled simulation approach that links existing transmission and distribution dynamic simulators through FNCS. FNCS is a middleware interface and framework that manages the interaction and synchronization of the transmission and distribution simulators. Preliminary testing results show the validity and capability of the proposed open-source co-simulation framework and the decoupled co-simulation methodology.

Huang, Renke↗
DOE OSTI2015

Extensions to Dynamic System Simulation of Fissile Solution Systems

Previous reports have documented the results of applying dynamic system simulation (DSS) techniques to model a variety of fissile solution systems. The SUPO (Super Power) aqueous homogeneous reactor (AHR) was chosen as the benchmark for comparison of model results to experimental data for steadystate operation.1 Subsequently, DSS was applied to additional AHR to verify results obtained for SUPO and extend modeling to prompt critical excursions, ramp reactivity insertions of various magnitudes and rate, and boiling operations in SILENE and KEWB (Kinetic Experiment Water Boiler).2 Additional models for pressurized cores (HRE: Homogeneous Reactor Experiment), annular core geometries, and accelerator-driven subcritical systems (ADAHR) were developed and results reported.3 The focus of each of these models is core dynamics; neutron kinetics, thermal hydraulics, radiolytic gas generation and transport are coupled to examine the time-based evolution of these systems from start-up through transition to steady-state. A common characteristic of these models is the assumption that (a) core cooling system inlet temperature and flow and (b) plenum gas inlet pressure and flow are held constant; no external (to core) component operations that may result in dynamic change to these parameters are considered. This report discusses extension of models to include explicit reference to cooling structures and radiolytic gas handling. The accelerator-driven subcritical generic system model described in References 3 and 4 is used as a basis for this extension.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
NASA NTRS2019

Pilot Sensitivity to Simulator Flight Dynamics Model Formulation for Stall Training

A piloted simulation study was performed in the Cockpit Motion Facility at the National Aeronautics and Space Administration Langley Research Center. The research was motivated by the desire to reduce the commercial transport airplane fatal accident rate due to in-flight loss of control. The purpose of this study, which focused on a generic T-tail transport airplane, was to assess pilot sensitivity to flight dynamics model formulation used during a simulator stall recognition and recovery training/demonstration profile. To accomplish this, the flight dynamics model was designed with many configuration options. The model options were based on recently acquired static and dynamic stability and control data from sources that included wind tunnel, water tunnel, and computational fluid dynamics. The results, which are specific to a transport airplane stall recognition and recovery guided demonstration scenario, showed the two most important aerodynamic effects (other than stick pusher) to model were stall roll- off and the longitudinal static stability characteristic associated with the pitch break.

Cunningham, Kevin↗
DOE OSTI2017

A Simulation-Based Dynamic Approach for External Flooding Analysis in Nuclear Power Plants

All nuclear power plants must consider and evaluate external flooding risks such as local intense precipitation, dam failure, and coastal flooding due to storm surge or tsunami. While these events could challenge off-site power and other plant structure integrity, threaten plant safety systems and components, and limit plant access, they are more than often qualitatively regarded as risk insignificant and screened out from detailed evaluation and quantification. The recent lessons learned from the Fukushima seismic/tsunami initiated nuclear accident (2011), the Fort Calhoun (2011), Vermont Yankee (2013), Arkansas Nuclear One (2013), and St. Luice (2014) flooding events showed otherwise. However, developing an external flood model with traditional event tree/fault tree approach as in a static probabilistic risk assessment (PRA) model could be difficult to accurately represent plant system and component behavior and reliability of manual actions during an ever-progressing flood event. The plant response to external flood may be highly spatial- and time- dependent and subject to the hydrological and hydraulic characteristics of the flood event. Such unique challenges prompt the investigation of using the simulation-based dynamic analysis approaches for external flood risk assessment. Simulation methods can better illustrate the performance of structures, systems, and components during an external flooding event. A general framework to perform a simulation-based dynamic flooding analysis is presented in this paper with the sub-tasks of flood hazard analysis, flood fragility analysis, plant response modeling, safety margin analysis or PRA quantification. A new type of State PRA modeling technique is introduced to incorporate time-related interactions such as those from 3D simulations into a traditional PRA model.

99 GENERAL AND MISCELLANEOUS↗
DOE OSTI2015

Voltage equilibration for reactive atomistic simulations of electrochemical processes

We introduce electrochemical dynamics with implicit degrees of freedom (EChemDID), a model to describe electrochemical driving force in reactive molecular dynamics simulations. The method describes the equilibration of external electrochemical potentials (voltage) within metallic structures and their effect on the self-consistent partial atomic charges used in reactive molecular dynamics. An additional variable assigned to each atom denotes the local potential in its vicinity and we use fictitious, but computationally convenient, dynamics to describe its equilibration within connected metallic structures on-the-fly during the molecular dynamics simulation. This local electrostatic potential is used to dynamically modify the atomic electronegativities used to compute partial atomic changes via charge equilibration. Validation tests show that the method provides an accurate description of the electric fields generated by the applied voltage and the driving force for electrochemical reactions. We demonstrate EChemDID via simulations of the operation of electrochemical metallization cells. The simulations predict the switching of the device between a high-resistance to a low-resistance state as a conductive metallic bridge is formed and resistive currents that can be compared with experimental measurements. In addition to applications in nanoelectronics, EChemDID could be useful to model electrochemical energy conversion devices.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2020

Evolutionary multi-objective optimization and Pareto-frontal uncertainty quantification of interatomic forcefields for thermal conductivity simulations

Predictive Molecular Dynamics simulations of thermal transport require forcefields that can simultaneously reproduce several structural, thermodynamic and vibrational properties of materials like lattice constants, phonon density of states, and specific heat. This requires a multi-objective optimization approach for forcefield parameterization. Existing methodologies for forcefield parameterization use ad-hoc and empirical weighting schemes to convert this into a single-objective optimization problem. Here, we provide and describe software to perform multi-objective optimization of Stillinger–Weber forcefields (SWFF) for two-dimensional layered materials using the recently developed 3rd generation non-dominated sorting genetic algorithm (NSGA-III). NSGA-III converges to the set of optimal forcefields lying on the Pareto front in the multi-dimensional objective space. This set of forcefields is used for uncertainty quantification of computed thermal conductivity due to variability in the forcefield parameters. We demonstrate this new optimization scheme by constructing a SWFF for a representative two-dimensional material, 2H-MoSe 2 and quantifying the uncertainty in their computed thermal conductivity.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2022

Joint neutron/molecular dynamics vibrational spectroscopy reveals softening of HIV-1 protease upon binding of a tight inhibitor

Biomacromolecules are inherently dynamic, and their dynamics are interwoven into function. The fast collective vibrational dynamics in proteins occurs in the low picosecond timescale corresponding to frequencies of ~5-50 cm -1 . This sub-to-low THz frequency regime covers the low-amplitude collective breathing motions of a whole protein and vibrations of the constituent secondary structure elements, such as α-helices, β-sheets and loops. We have used inelastic neutron scattering experiments in combination with molecular dynamics simulations to demonstrate the vibrational dynamics softening of HIV-1 protease, a target of HIV/AIDS antivirals, upon binding of a tight clinical inhibitor darunavir. Changes in the vibrational density of states of matching structural elements in the two monomers of the homodimeric protein are not identical, indicating asymmetric effect of darunavir on the vibrational dynamics. Three of the 11 major secondary structure elements contribute over 40% to the overall changes in the vibrational density of states upon darunavir binding. Molecular dynamics simulations informed by experiments allowed us to estimate that the altered vibrational dynamics of the protease would contribute -3.6 kcal/mol -1 at 300 K, or 25%, to the free energy of darunavir binding. As HIV-1 protease drug resistance remains a concern, our results open a new avenue to help establish a direct quantitative link between protein vibrational dynamics and drug resistance.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗