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At least 1,279 records · Page 71

HPF Implementation of ARC3D

We present an HPF (High Performance Fortran) implementation of ARC3D code along with the profiling and performance data on SGI Origin 2000. Advantages and limitations of HPF as a parallel programming language for CFD applications are discussed. For achieving good performance results we used the data distributions optimized for implementation of implicit and explicit operators of the solver and boundary conditions. We compare the results with MPI and directive based implementations.

Frumkin, Michael↗

A parallel row-based algorithm with error control for standard-cell replacement on a hypercube multiprocessor

A new row-based parallel algorithm for standard-cell placement targeted for execution on a hypercube multiprocessor is presented. Key features of this implementation include a dynamic simulated-annealing schedule, row-partitioning of the VLSI chip image, and two novel new approaches to controlling error in parallel cell-placement algorithms; Heuristic Cell-Coloring and Adaptive (Parallel Move) Sequence Control. Heuristic Cell-Coloring identifies sets of noninteracting cells that can be moved repeatedly, and in parallel, with no buildup of error in the placement cost. Adaptive Sequence Control allows multiple parallel cell moves to take place between global cell-position updates. This feedback mechanism is based on an error bound derived analytically from the traditional annealing move-acceptance profile. Placement results are presented for real industry circuits and the performance is summarized of an implementation on the Intel iPSC/2 Hypercube. The runtime of this algorithm is 5 to 16 times faster than a previous program developed for the Hypercube, while producing equivalent quality placement. An integrated place and route program for the Intel iPSC/2 Hypercube is currently being developed.

Sargent, Jeff Scott↗

Machine‐learning‐based predictive control of nonlinear processes. Part II: Computational implementation

Abstract Machine learning is receiving more attention in classical engineering fields, and in particular, recurrent neural networks (RNNs) coupled with ensemble regression tools have demonstrated the capability of modeling nonlinear dynamic processes. In Part I of this two‐article series, the Lyapunov‐based model predictive control (LMPC) method using a single RNN model and an ensemble of RNN models, respectively, was rigorously developed for a general class of nonlinear systems. In the present article, computational implementation issues of this new control method ranging from training of the RNN models, ensemble regression of the RNN models, and parallel computation for accelerating the real‐time model calculations are addressed. Furthermore, a chemical reactor example is used to demonstrate the implementation and effectiveness of these machine‐learning tools in LMPC as well as compare them with standard state‐space model identification tools.

Wu, Zhe↗

Performance of a parallel code for the Euler equations on hypercube computers

The performance of hypercubes were evaluated on a computational fluid dynamics problem and the parallel environment issues were considered that must be addressed, such as algorithm changes, implementation choices, programming effort, and programming environment. The evaluation focuses on a widely used fluid dynamics code, FLO52, which solves the two dimensional steady Euler equations describing flow around the airfoil. The code development experience is described, including interacting with the operating system, utilizing the message-passing communication system, and code modifications necessary to increase parallel efficiency. Results from two hypercube parallel computers (a 16-node iPSC/2, and a 512-node NCUBE/ten) are discussed and compared. In addition, a mathematical model of the execution time was developed as a function of several machine and algorithm parameters. This model accurately predicts the actual run times obtained and is used to explore the performance of the code in interesting but yet physically realizable regions of the parameter space. Based on this model, predictions about future hypercubes are made.

Barszcz, Eric↗

Ion temperature anisotropy model with cross‐field drifts in the scrape‐off layer

Abstract An ion temperature anisotropy model including cross‐field drifts has been implemented in the 2D transport code UEDGE. Two ion temperature equations are solved in the model to give separate ion temperatures perpendicular and parallel to the magnetic field, which results in an additional mirror force for ion parallel transport and also leads to an additional curvature drift in the perpendicular direction. In our previous work, an ion temperature anisotropy model was implemented and applied to the full 2D version of UEDGE including recycled neutrals. The simulation results showed that the mirror force due to anisotropy reduces ion parallel flow velocity, however, the simulations were presented without cross‐field electric and magnetic drifts. Nevertheless, in present medium‐size tokamaks or future compact fusion devices, cross‐fields are important. In this work, the anisotropy model is extended to be compatible with the inclusion of cross‐field drifts. Preliminary results on comparison between the model solutions with and without cross‐field drifts are presented.

Zhao, Menglong↗

A real-time, dual processor simulation of the rotor system research aircraft

A real-time, man-in-the loop, simulation of the rotor system research aircraft (RSRA) was conducted. The unique feature of this simulation was that two digital computers were used in parallel to solve the equations of the RSRA mathematical model. The design, development, and implementation of the simulation are documented. Program validation was discussed, and examples of data recordings are given. This simulation provided an important research tool for the RSRA project in terms of safe and cost-effective design analysis. In addition, valuable knowledge concerning parallel processing and a powerful simulation hardware and software system was gained.

Mackie, D. B.↗

Parallel performance investigations of an unstructured mesh Navier-Stokes solver

A Reynolds-averaged Navier-Stokes solver based on unstructured mesh techniques for analysis of high-lift configurations is described. The method makes use of an agglomeration multigrid solver for convergence acceleration. Implicit line-smoothing is employed to relieve the stiffness associated with highly stretched meshes. A GMRES technique is also implemented to speed convergence at the expense of additional memory usage. The solver is cache efficient and fully vectorizable, and is parallelized using a two-level hybrid MPI-OpenMP implementation suitable for shared and/or distributed memory architectures, as well as clusters of shared memory machines. Convergence and scalability results are illustrated for various high-lift cases.

Mavriplis, Dimitri J.↗

Enabling Parallel Performance and Portability of Solid Mechanics Simulations Across CPU and GPU Architectures

Efficiently simulating solid mechanics is vital across various engineering applications. As constitutive models grow more complex and simulations scale up in size, harnessing the capabilities of modern computer architectures has become essential for achieving timely results. This paper presents advancements in running parallel simulations of solid mechanics on multi-core CPUs and GPUs using a single-code implementation. This portability is made possible by the C++ matrix and array (MATAR) library, which interfaces with the C++ Kokkos library, enabling the selection of fine-grained parallelism backends (e.g., CUDA, HIP, OpenMP, pthreads, etc.) at compile time. MATAR simplifies the transition from Fortran to C++ and Kokkos, making it easier to modernize legacy solid mechanics codes. We applied this approach to modernize a suite of constitutive models and to demonstrate substantial performance improvements across different computer architectures. This paper includes comparative performance studies using multi-core CPUs along with AMD and NVIDIA GPUs. Results are presented using a hypoelastic–plastic model, a crystal plasticity model, and the viscoplastic self-consistent generalized material model (VPSC-GMM). The results underscore the potential of using the MATAR library and modern computer architectures to accelerate solid mechanics simulations.

Morgan, Nathaniel (ORCID:0000000276118449)↗

Algebraic Algorithms for Betweenness and Percolation Centrality

Abstract In this paper, we explored different ways to write the algebraic version of betweenness centrality algorithm. Particularly, we focused on Brandes' algorithm. We aimed for algebraic betweenness centrality that can be parallelized easily. We proposed 3-tuple geodetic semiring as an extension to the usual geodetic semiring with 2-tuples. Using the 3-tuple geodetic semiring, Dijkstra's and Brandes' algorithm, we wrote more concise and general algebraic betweenness centrality (ABC) algorithm which is valid for weighted and directed graphs. We also proposed an alternative version of ABC using the usual geodetic semiring with 2-tuple where we used a simple way to construct shortest path tree after computing shortest path distances in the usual geodetic semiring. This allows us to avoid computational complexity of ABC implementation using 3-tuple geodetic semiring. We used numba to optimize and parallelize ABC. We evaluated the performance of ABC using 2-tuple geodetic semiring as compared to NetworkX, a common python package for graph algorithms. We did scalability experiments on parallel ABC and showed its total speedup. We also showed that with small modification, ABC can be adapted to algebraicly compute other centrality measures such as percolation centrality.

97 MATHEMATICS AND COMPUTING↗

Implementing JEDI into NASA GMAO’s Real Time Production Suite

NASA’s Global Modeling and Assimilation Office (GMAO) has prepared their first production system involving the Joint Effort for Data assimilation Integration (JEDI) framework. In this system the central analysis, that drives the deterministic forecast, will be provided using JEDI. This talk outlines the phased approach to implementing JEDI into production that GMAO has designed, and how this approach will allow for a careful analysis of the system against the existing data assimilation framework (GSI). In the first phase of implementation the existing data assimilation system will perform certain actions that are still under development in JEDI. These include thinning the observations and producing satellite bias correction coefficients. JEDI is hooked up to the existing workflow so a single line switch can activate whether the existing or JEDI-based analysis is cycled. Outside of the monumental effort to construct JEDI that is ongoing at the Joint Center for Satellite Data Assimilation (JCSDA), GMAO have undertaken two areas of considerable effort. The talk will describe these efforts and highlight the main challenges that have been encountered. The first area of work is to implement the background error model from the existing data assimilation system into JEDI. The second is to validate the observing system in JEDI against the one in GSI, which has involved several new features being added to the observation operators in JEDI. While the longer-term plans involve trying to improve on the GSI in these two areas, GMAO is keen to have JEDI start from a trusted baseline. This is also key to implementing JEDI quickly so other priorities, such as increasing the number of model levels, can be easily worked on in parallel. GMAO is actively working on a framework to shepherd in the next generation coupled data assimilation system and model. As JEDI is implemented for the first time the plan is to ambitiously cycle through implementations, frequently bringing JEDI features to production. Details of these plans will be given in the talk and we will highlight key implementation and product milestones that we hope to achieve, as well as touch on the development environment that we will use to support frequent refreshing of the production system.

JEDI↗

A practical guide to replica-exchange Wang—Landau simulations

This paper is based on a series of tutorial lectures about the replica-exchange Wang-Landau (REWL) method given at the IX Brazilian Meeting on Simulational Physics (BMSP 2017). It provides a practical guide for the implementation of the method. A complete example code for a model system is available online. In this paper, we discuss the main parallel features of this code after a brief introduction to the REWL algorithm. The tutorial section is mainly directed at users who have written a single-walker Wang–Landau program already but might have just taken their first steps in parallel programming using the Message Passing Interface (MPI). In the last section, we answer "frequently asked questions" from users about the implementation of REWL for different scientific problems.

Vogel, Thomas↗

Reconfigurable Hardware for Compressing Hyperspectral Image Data

High-speed, low-power, reconfigurable electronic hardware has been developed to implement ICER-3D, an algorithm for compressing hyperspectral-image data. The algorithm and parts thereof have been the topics of several NASA Tech Briefs articles, including Context Modeler for Wavelet Compression of Hyperspectral Images (NPO-43239) and ICER-3D Hyperspectral Image Compression Software (NPO-43238), which appear elsewhere in this issue of NASA Tech Briefs. As described in more detail in those articles, the algorithm includes three main subalgorithms: one for computing wavelet transforms, one for context modeling, and one for entropy encoding. For the purpose of designing the hardware, these subalgorithms are treated as modules to be implemented efficiently in field-programmable gate arrays (FPGAs). The design takes advantage of industry- standard, commercially available FPGAs. The implementation targets the Xilinx Virtex II pro architecture, which has embedded PowerPC processor cores with flexible on-chip bus architecture. It incorporates an efficient parallel and pipelined architecture to compress the three-dimensional image data. The design provides for internal buffering to minimize intensive input/output operations while making efficient use of offchip memory. The design is scalable in that the subalgorithms are implemented as independent hardware modules that can be combined in parallel to increase throughput. The on-chip processor manages the overall operation of the compression system, including execution of the top-level control functions as well as scheduling, initiating, and monitoring processes. The design prototype has been demonstrated to be capable of compressing hyperspectral data at a rate of 4.5 megasamples per second at a conservative clock frequency of 50 MHz, with a potential for substantially greater throughput at a higher clock frequency. The power consumption of the prototype is less than 6.5 W. The reconfigurability (by means of reprogramming) of the FPGAs makes it possible to effectively alter the design to some extent to satisfy different requirements without adding hardware. The implementation could be easily propagated to future FPGA generations and/or to custom application-specific integrated circuits.

Aranki, Nazeeh↗

Modified Andronov-Hopf Oscillator-Based Grid-Forming Converter with Emulated Virtual Cable for Enhanced Power Sharing Performance

Nonlinear oscillator-based grid-forming converters offer superior dynamic and steady-state performance, making them an attractive solution for interconnecting renewable resources. This paper proposes a novel modified Andronov-Hopf oscillator to enhance the operating spectrum and facilitate the integration of renewable energy sources. An inner loop controller based on the Lyapunov energy function is implemented to achieve robust stability and performance, while a virtual cable emulation strategy enables seamless parallel operation. Comprehensive modeling and simulation studies validate the effectiveness of the proposed system, demonstrating its capabilities in addressing diverse operating scenarios, including grid faults, renewable energy fluctuations, and parallel operation. The proposed solution exhibits fast transient response, robust stability, and flexible operation, making it a valuable contribution to the field of renewable energy integration. The results of this study can be used to inform the design and implementation of next-generation grid-forming converters, enabling a more sustainable and reliable energy future. Additionally, the proposed system's ability to operate in both grid-connected and islanded modes makes it an ideal candidate for remote and off-grid renewable energy applications. The proposed solution's scalability and modularity also make it suitable for large-scale renewable energy integration. The proposed system is verified through MATLAB/Simulink and PLECS simulations, demonstrating its effectiveness in ensuring robust and efficient operation.

Andronov-Hopf Oscillator (AHO)↗

A parallel row-based algorithm for standard cell placement with integrated error control

A new row-based parallel algorithm for standard-cell placement targeted for execution on a hypercube multiprocessor is presented. Key features of this implementation include a dynamic simulated-annealing schedule, row-partitioning of the VLSI chip image, and two novel approaches to control error in parallel cell-placement algorithms: (1) Heuristic Cell-Coloring; (2) Adaptive Sequence Length Control.

Sargent, Jeff S.↗

Community Detection on the GPU

We present and evaluate a new GPU algorithm based on the Louvain method for community detection. Our algorithm is the first for this problem that parallelizes the access to individual edges. In this way we can fine tune the load balance when processing networks with nodes of highly varying degrees. This is achieved by scaling the number of threads assigned to each node according to its degree. Extensive experiments show that we obtain speedups up to a factor of 270 compared to the sequential algorithm. The algorithm consistently outperforms other recent shared memory implementations and is only one order of magnitude slower than the current fastest parallel Louvain method running on a Blue Gene/Q supercomputer using more than 500K threads.

community detection↗

(abstract) A High Throughput 3-D Inner Product Processor

A particularily challenging image processing application is the real time scene acquisition and object discrimination. It requires spatio-temporal recognition of point and resolved objects at high speeds with parallel processing algorithms. Neural network paradigms provide fine grain parallism and, when implemented in hardware, offer orders of magnitude speed up. However, neural networks implemented on a VLSI chip are planer architectures capable of efficient processing of linear vector signals rather than 2-D images. Therefore, for processing of images, a 3-D stack of neural-net ICs receiving planar inputs and consuming minimal power are required. Details of the circuits with chip architectures will be described with need to develop ultralow-power electronics. Further, use of the architecture in a system for high-speed processing will be illustrated.

imaging parallel processing algorithms linear vect↗

Tuning HDF5 subfiling performance on parallel file systems

Subfiling is a technique used on parallel file systems to reduce locking and contention issues when multiple compute nodes interact with the same storage target node. Subfiling provides a compromise between the single shared file approach that instigates the lock contention problems on parallel file systems and having one file per process, which results in generating a massive and unmanageable number of files. In this paper, we evaluate and tune the performance of recently implemented subfiling feature in HDF5. In specific, we explain the implementation strategy of subfiling feature in HDF5, provide examples of using the feature, and evaluate and tune parallel I/O performance of this feature with parallel file systems of the Cray XC40 system at NERSC (Cori) that include a burst buffer storage and a Lustre disk-based storage. We also evaluate I/O performance on the Cray XC30 system, Edison, at NERSC. Our results show performance benefits of 1.2X to 6X performance advantage with subfiling compared to writing a single shared HDF5 file. We present our exploration of configurations, such as the number of subfiles and the number of Lustre storage targets to storing files, as optimization parameters to obtain superior I/O performance. Based on this exploration, we discuss recommendations for achieving good I/O performance as well as limitations with using the subfiling feature.

97 MATHEMATICS AND COMPUTING↗