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At least 1,297 records · Page 72

Mapping of the Ronda peridotite massif (Spain) from AVIRIS spectro-imaging survey: A first attempt

In both AVIRIS and ISM data, through the use of mixing models, geological boundaries of the Ronda massif are identified with respect to the surrounding rocks. We can also yield first-order vegetation maps. ISM and AVIRIS instruments give consistent results. On the basis of endmember fraction images, it is then possible to discard areas highly vegetated or not belonging to the peridotite massif. Within the remaining part of the mosaic, spectro-mixing analysis reveals spectral variations in the peridotite massif between the well-exposed areas. Spatially organized units are depicted, related to differences in the relative depth of the absorption band at 1 micron, and it may be due to a different pyroxene content. At this stage, it is worth noting that, although mineralogical variations observed in the rocks are at a sub-pixel scale for the airborne analysis, we see an emerging spatial pattern in the distribution of spectral variations across the massif which might be prevailingly related to mineralogy. Although it is known from fieldwork that the Ronda peridotite massif exhibits mineralogical variations at local scale in the content of pyroxene, and at regional scale in different mineral facies, ranging from garnet-, to spinel- to plagioclase-lherzolites, no attempt has been done yet to produce a synoptic map relating the two scales of analysis. The present work is a first attempt to reach this objective, though a lot more work is still required. In particular, for the purpose of mineralogical interpretation, it is critical to relate the airborne observation to field work and laboratory spectra of Ronda rocks already obtained, with the use of image endmembers and associated reference endmembers. Also, the pretty rough linear mixing model used here is taken as a 'black-box' process which does not necessarily apply correctly to the physical situation at the sub-pixel level. One may think of using the ground-truth observations bearing on the sub-pixel statistical characteristics (texture, structural pattern, surface distribution and vegetation contribution (grass,..)) to produce a more advanced mixing model, physically appropriate to the geologic and environmental contexts.

Pinet, P. C.↗

Stochastic thermodynamic cycles of a mesoscopic thermoelectric engine

Here, we analyze a steady-state thermoelectric engine, whose working substance consists of two capacitively coupled quantum dots. One dot is tunnel-coupled to a hot reservoir serving as a heat source, the other one to two electrically biased reservoirs at a colder temperature, such that work is extracted under the form of a steady-state current against the bias. In single realizations of the dynamics of this steady-state engine autonomous, four-stroke cycles can be identified. The cycles are purely stochastic, in contrast to mechanical autonomous engines which exhibit self-oscillations. In particular, these cycles fluctuate in direction and duration and occur in competition with other spurious cycles. Using a stochastic thermodynamic approach, we quantify the cycle fluctuations and relate them to the entropy produced during individual cycles. We identify the cycle mainly responsible for the engine performance and quantify its statistics with tools from graph theory. We show that such stochastic cycles are made possible because the work extraction mechanism is itself stochastic instead of the periodic time dependence in the working-substance Hamiltonian which can be found in conventional mechanical engines. Our investigation brings new perspectives about the connection between cyclic and steady-state engines.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Accelerating Feldman-Cousins on NOvA using NERSC Supercomputers

When fitting to data with low stats and near physical boundaries, extra measures need to be taken to ensure proper statistical coverage. The method NOvA uses is called the Feldman-Cousins procedure, which entails fitting thousands of independent pseudoexperiments to generate acceptance intervals that are then used to correct our fits. The scale required by the Feldman Cousins procedure makes it extremely computationally intensive. In past analyses, it has taken up to several weeks to complete, bottlenecking our final results. Here I present recent work by members of the NOvA experiment and the SciDAC4 collaboration to enable the use of the super-computing facilities at NERSC to process our Feldman-Cousins corrections over 150x faster, allowing us to do more studies, increase the precision of our fits, and produce results quickly.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Turbulent Diffusivities for Momentum, Heat, Salt and Passive Scalars

A program began ten years ago to build a turbulence model to describe high Reynolds numbers flows. Specifically, the aim was to devise a model that would satisfy two basic conditions: reproduce available turbulence data (laboratory, numerical simulations, etc.) concerning shear driven flows, buoyancy driven flows, 2D turbulence, freely decaying turbulence etc., and yet be manageable so as to be used, for example, in GCM'S. The model was presented in a series of papers that have appeared in Physics of Fluids since 1996. A total of about 80 turbulence statistics were reproduced. The model has no adjustable parameters. The next step was to apply the model to construct the vertical diffusities K for moment K(sub m), temperature K(sub h), salt K(sub s), and passive scalars K(sub c). First, we took K(sub c) = K(sub h) and tested the model using the GFDL ocean model. The results for the profiles of T and S vs. depth are indistinguishable from those derided using the latest model, the KPP model by the NCAR group. Presently, we are running the same GFDL code relaxing the assumptive K(sub c) = K(sub h). Indeed, the turbulence model yelds a salt diffusivity that depends on R(sub i) and R(sub rho) = ((beta)(delta)S/(alpha)(delta)T/(delta)z) in such a way that K(sub s) may be quite different from K(sub h). Salt fingers and double diffusivity laboratory data are reproduced. Results from the ocean model will be available shortly. Finally, we are trying to derive the horizontal diffusivities with the goal of providing a physically acceptable representation of mesoscale eddies. The recently suggested GMW parameterization has improved several O-GCM results and the goal here is to try to derive/justify it from a turbulence model and/or propose improvements/modifications. Theoretical work is in progress.

Canuto, V. M.↗

Turbulent Diffusivities for Momentum, Heat, Salt and Passive Scalars

A program began ten years ago to build a turbulence model to describe high Reynolds numbers flows. Specifically, the aim was to devise a model that would satisfy two basic conditions: reproduce available turbulence data (laboratory, numerical simulations, etc.) concerning shear driven flows, buoyancy driven flows, 2D turbulence, freely decaying turbulence etc., and yet be manageable so as to be used, for example, in General Circulation Models (GCM'S). The model was presented in a series of papers that have appeared in Physics of Fluids since 1996. A total of about 80 turbulence statistics were reproduced. The model has no adjustable parameters. The next step was to apply the model to construct the vertical diffusities K for moment K(sub m), temperature K(sub h), salt K(sub s). and passive scalars K(sub c). First, we took K(sub s) = K(sub h) and tested the model using the GFDL ocean model. The results for the profiles of T and S vs. depth are indistinguishable from those derived using the latest model, the KPP model by the NCAR group. Presently, we are running the same Geophysical Fluid Dynamics Laboratory (GFDL) code relaxing the assumptive K(sub s) = K(sub h). Indeed, the turbulence model yields a salt diffusivity that depends on Ri and R rho (= Beta delta S/delta z/alpha delta T/delta z) in such a way that K(sub s) may be quite different from K(sub h). Salt fingers and double diffusivity laboratory data are reproduced. Results from the ocean model will be available shortly. Finally, we are trying to derive the horizontal diffusivities with the goal of providing a physically acceptable representation of mesoscale eddies. The recently suggested GMW parameterization has improved several O-GCM results and the goal here is to try to derive/justify it from a turbulence model and/or propose improvements/modifications. Theoretical work is in progress.

Canuto, V. M.↗

Turbulent Diffusivities for Momentum, Heat, Salt and Passive Scalars

A program began ten years ago to build a turbulence model to describe high Reynolds numbers flows. Specifically, the aim was to devise a model that would satisfy two basic conditions: reproduce available turbulence data (laboratory, numerical simulations, etc.) concerning shear driven flows, buoyancy driven flows, 2D turbulence, freely decaying turbulence etc., and yet be manageable so as to be used, for example, in GCM'S. The model was presented in a series of papers that have appeared in Physics of FLuids since 1996. A total of about 80 turbulence statistics were reproduced. The model has no adjustable parameters. The next step was to apply the model to construct the vertical diffusivities K for moment K(sub m), temperature K(sub h), salt K(sub g) and passive scalars K(sub c). First, we took K(sub g) = K(sub h) and tested the model using the Geophysical Fluid Dynamics Laboratory (GFDL) ocean model. The results for the profiles of T and S vs. depth are indistinguishable from those derided using the latest model, the KPP model by the NCAR group. Presently, we are running the same GFDL code relaxing the assumptive K(sub g) = K(sub h). Indeed, the turbulence model yields a salt diffusivity that depends on Ri and R Rho (= Beta Sigma S/Sigma z/Alpha Sigma T/Sigma z) in such a way that K(sub g) may be quite different from K(sub h). Salt fingers and double diffusivity laboratory data are reproduced. Results from the ocean model will be available shortly. Finally, we are trying to derive the horizontal diffusivities with the goal of providing a physically acceptable representation of mesoscale eddies. The recently suggested GMW parameterization has improved several O-GCM results and the goal here is to try to derive/justify it from a turbulence model and/or propose improvements/modifications. Theoretical work is in progress.

Canuto, Vittorio↗

Assessing the Value of an Optional Radiation Oncology Clinical Rotation During the Core Clerkships in Medical School

Purpose: Few medical students are given proper clinical training in oncology, much less radiation oncology. We attempted to assess the value of adding a radiation oncology clinical rotation to the medical school curriculum. Methods and Materials: In July 2010, Jefferson Medical College began to offer a 3-week radiation oncology rotation as an elective course for third-year medical students during the core surgical clerkship. During 2010 to 2012, 52 medical students chose to enroll in this rotation. The rotation included outpatient clinics, inpatient consults, didactic sessions, and case-based presentations by the students. Tests of students' knowledge of radiation oncology were administered anonymously before and after the rotation to evaluate the educational effectiveness of the rotation. Students and radiation oncology faculty were given surveys to assess feedback about the rotation. Results: The students' prerotation test scores had an average of 64% (95% confidence interval [CI], 61-66%). The postrotation test scores improved to an average of 82% (95% CI, 80-83%; 18% absolute improvement). In examination question analysis, scores improved in clinical oncology from 63% to 79%, in radiobiology from 70% to 77%, and in medical physics from 62% to 88%. Improvements in all sections but radiobiology were statistically significant. Students rated the usefulness of the rotation as 8.1 (scale 1-9; 95% CI, 7.3-9.0), their understanding of radiation oncology as a result of the rotation as 8.8 (95% CI, 8.5-9.1), and their recommendation of the rotation to a classmate as 8.2 (95% CI, 7.6-9.0). Conclusions: Integrating a radiation oncology clinical rotation into the medical school curriculum improves student knowledge of radiation oncology, including aspects of clinical oncology, radiobiology, and medical physics. The rotation is appreciated by both students and faculty.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

{chi}{sup 2} versus median statistics in supernova type Ia data analysis

In this paper we compare the performances of the {chi}{sup 2} and median likelihood analysis in the determination of cosmological constraints using type Ia supernovae data. We perform a statistical analysis using the 307 supernovae of the Union 2 compilation of the Supernova Cosmology Project and find that the {chi}{sup 2} statistical analysis yields tighter cosmological constraints than the median statistic if only supernovae data is taken into account. We also show that when additional measurements from the cosmic microwave background and baryonic acoustic oscillations are considered, the combined cosmological constraints are not strongly dependent on whether one applies the {chi}{sup 2} statistic or the median statistic to the supernovae data. This indicates that, when complementary information from other cosmological probes is taken into account, the performances of the {chi}{sup 2} and median statistics are very similar, demonstrating the robustness of the statistical analysis.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Sea Ice Rheology Experiment (SIREx): 1. Scaling and Statistical Properties of Sea-Ice Deformation Fields

As the sea-ice modeling community is shifting to advanced numerical frameworks, developing new sea-ice rheologies, and increasing model spatial resolution, ubiquitous deformation features in the Arctic sea ice are now being resolved by sea-ice models. Initiated at the Forum for Arctic Modeling and Observational Synthesis, the Sea Ice Rheology Experiment (SIREx) aims at evaluating state-of-the-art sea-ice models using existing and new metrics to understand how the simulated deformation fields are affected by different representations of sea-ice physics (rheology) and by model configuration. Part 1 of the SIREx analysis is concerned with evaluation of the statistical distribution and scaling properties of sea-ice deformation fields from 35 different simulations against those from the RADARSAT Geophysical Processor System (RGPS). For the first time, the viscous-plastic (and the elastic-viscous-plastic variant), elastic-anisotropic-plastic, and Maxwell-elasto-brittle rheologies are compared in a single study. We find that both plastic and brittle sea-ice rheologies have the potential to reproduce the observed RGPS deformation statistics, including multi-fractality. Model configuration (e.g., numerical convergence, atmospheric representation, spatial resolution) and physical parameterizations (e.g., ice strength parameters and ice thickness distribution) both have effects as important as the choice of sea-ice rheology on the deformation statistics. It is therefore not straightforward to attribute model performance to a specific rheological framework using current deformation metrics. In light of these results, we further evaluate the statistical properties of simulated Linear Kinematic Features in a SIREx Part 2 companion paper.

54 ENVIRONMENTAL SCIENCES↗

Low-frequency Carbon Radio Recombination Lines. I. Calculations of Departure Coefficients

In the first paper of this series, we study the level population problem of recombining carbon ions. We focus our study on high quantum numbers, anticipating observations of carbon radio recombination lines to be carried out by the Low Frequency Array. We solve the level population equation including angular momentum levels with updated collision rates up to high principal quantum numbers. We derive departure coefficients by solving the level population equation in the hydrogenic approximation and including low-temperature dielectronic capture effects. Our results in the hydrogenic approximation agree well with those of previous works. When comparing our results including dielectronic capture, we find differences that we ascribe to updates in the atomic physics (e.g., collision rates) and to the approximate solution method of the statistical equilibrium equations adopted in previous studies. A comparison with observations is discussed in an accompanying article, as radiative transfer effects need to be considered.

79 ASTRONOMY AND ASTROPHYSICS↗

Simulating Z 2 lattice gauge theory on a quantum computer

The utility of quantum computers for simulating lattice gauge theories is currently limited by the noisiness of the physical hardware. Various quantum error mitigation strategies exist to reduce the statistical and systematic uncertainties in quantum simulations via improved algorithms and analysis strategies. We perform quantum simulations of Z 2 gauge theory with matter to study the efficacy and interplay of different error mitigation methods: readout error mitigation, randomized compiling, rescaling, and dynamical decoupling. We compute Minkowski correlation functions in this confining gauge theory and extract the mass of the lightest spin-1 state from fits to their time dependence. Quantum error mitigation extends the range of times over which our correlation function calculations are accurate by a factor of 6 and is therefore essential for obtaining reliable masses.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

The Statistical Mechanics of Ideal MHD Turbulence

Turbulence is a universal, nonlinear phenomenon found in all energetic fluid and plasma motion. In particular. understanding magneto hydrodynamic (MHD) turbulence and incorporating its effects in the computation and prediction of the flow of ionized gases in space, for example, are great challenges that must be met if such computations and predictions are to be meaningful. Although a general solution to the "problem of turbulence" does not exist in closed form, numerical integrations allow us to explore the phase space of solutions for both ideal and dissipative flows. For homogeneous, incompressible turbulence, Fourier methods are appropriate, and phase space is defined by the Fourier coefficients of the physical fields. In the case of ideal MHD flows, a fairly robust statistical mechanics has been developed, in which the symmetry and ergodic properties of phase space is understood. A discussion of these properties will illuminate our principal discovery: Coherent structure and randomness co-exist in ideal MHD turbulence. For dissipative flows, as opposed to ideal flows, progress beyond the dimensional analysis of Kolmogorov has been difficult. Here, some possible future directions that draw on the ideal results will also be discussed. Our conclusion will be that while ideal turbulence is now well understood, real turbulence still presents great challenges.

Shebalin, John V.↗

Modeling Protein–Protein and Protein–Ligand Interactions by the ClusPro Team in CASP16

ABSTRACT In the CASP16 experiment, our team employed hybrid computational strategies to predict both protein–protein and protein–ligand complex structures. For protein–protein docking, we combined physics‐based sampling—using ClusPro FFT docking and molecular dynamics—with AlphaFold (AF)‐based sampling, followed by AF‐based refinement. Our method produced numerous high‐accuracy complex models, including cases where AF alone failed, underscoring the critical role of physics‐based sampling alongside deep learning‐based refinement. For protein–ligand docking, we integrated the ClusPro LigTBM template‐based approach with a machine learning‐based confidence model for rescoring. The method preserves conserved interaction fragments derived from homologous complexes, followed by local resampling using physics‐based sampling and a diffusion model. Our template‐based strategy achieved a mean lDDT‐PLI of 0.69 across 233 targets, which was highly competitive. These results demonstrate that combining physics‐based modeling with AI‐driven refinement can significantly enhance the accuracy of both protein–protein and protein–ligand structure predictions.

Ashizawa, Ryota [Department of Applied Mathematics↗

Theoretical study of various nonlinear phenomena in plasma systems and scaling of magneto-inertial-fusion targets

Plasma physics is an exciting field of study with a wide variety of nonlinear processes that come into play. Examples of such processes include the interaction of small-scale turbulence with large-scale plasma structures and the nonlinear saturation of plasma instabilities, for example those of magneto-hydrodynamical nature. During this Truman LDRD project, I studied a collection of nonlinear problems that are of interest to the field of plasma physics. This LDRD report summarizes four main research accomplishments. First, a new statistical model for describing inhomogeneous drift-wave turbulence inter- acting with zonal flows was developed. This new model includes the effects of nonlinear wave-wave collisions, which are expected to change the spectrum of the underlying DW turbulence and therefore the generation of zonal flows. Second, a new mathematical formalism was proposed to systematically apply the non- linear WKB approximation to general field theories, including those often used in fluid dynamics. This formalism represents an interesting tool for studying physical systems that show an explicit scale separation. Third, a weakly nonlinear model was developed to describe the magneto-Rayleigh-Taylor instability. This instability is of paramount importance to understand as it can reduce the performance of magnetic-inertial-fusion (MIF) platforms. The developed models captures the effects of harmonic generation and saturation of the linear growth of the instability. Finally, a framework was proposed for scaling magneto-inertial fusion (MIF) targets to larger pulsed-power drivers. From this framework, a set of scaling rules were derived that conserve the physical regimes of MIF systems when scaling up in peak current. By doing so, deleterious nonlinear processes that affect MIF performance may be kept at bay.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Confronting Models with Data: The GEWEX Cloud Systems Study

The GEWEX Cloud System Study (GCSS; GEWEX is the Global Energy and Water Cycle Experiment) was organized to promote development of improved parameterizations of cloud systems for use in climate and numerical weather prediction models, with an emphasis on the climate applications. The strategy of GCSS is to use two distinct kinds of models to analyze and understand observations of the behavior of several different types of clouds systems. Cloud-system-resolving models (CSRMs) have high enough spatial and temporal resolutions to represent individual cloud elements, but cover a wide enough range of space and time scales to permit statistical analysis of simulated cloud systems. Results from CSRMs are compared with detailed observations, representing specific cases based on field experiments, and also with statistical composites obtained from satellite and meteorological analyses. Single-column models (SCMs) are the surgically extracted column physics of atmospheric general circulation models. SCMs are used to test cloud parameterizations in an un-coupled mode, by comparison with field data and statistical composites. In the original GCSS strategy, data is collected in various field programs and provided to the CSRM Community, which uses the data to "certify" the CSRMs as reliable tools for the simulation of particular cloud regimes, and then uses the CSRMs to develop parameterizations, which are provided to the GCM Community. We report here the results of a re-thinking of the scientific strategy of GCSS, which takes into account the practical issues that arise in confronting models with data. The main elements of the proposed new strategy are a more active role for the large-scale modeling community, and an explicit recognition of the importance of data integration.

Randall, David↗

Calculation of the {pi}{sup +}{Sigma}{sup +} and {pi}{sup +}{Xi}{sup 0} Scattering Lengths in Lattice QCD

The {pi}{sup +}{Sigma}{sup +} and {pi}{sup +}{Xi}{sup 0} scattering lengths were calculated in mixed-action Lattice QCD with domain-wall valence quarks on the asqtad-improved coarse MILC configurations at four light-quark masses, and at two light-quark masses on the fine MILC configurations. Heavy Baryon Chiral Perturbation Theory with two and three flavors of light quarks was used to perform the chiral extrapolations. To NNLO in the three-flavor chiral expansion, the kaon-baryon processes that were investigated show no signs of convergence. Using the two-flavor chiral expansion for extrapolation, the pion-hyperon scattering lengths are found to be a{sub {pi}}{sup +}{sub {Sigma}}{sup +} = -0.197{+-}0.017 fm, and a{sub {pi}}{sup +}{sub {Xi}}{sup 0} = -0.098{+-}0.017 fm, where the comprehensive error includes statistical and systematic uncertainties.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗