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At least 1,315 records · Page 73

Sharing leaky-integrate-and-fire neurons for memory-efficient spiking neural networks

Spiking Neural Networks (SNNs) have gained increasing attention as energy-efficient neural networks owing to their binary and asynchronous computation. However, their non-linear activation, that is Leaky-Integrate-and-Fire (LIF) neuron, requires additional memory to store a membrane voltage to capture the temporal dynamics of spikes. Although the required memory cost for LIF neurons significantly increases as the input dimension goes larger, a technique to reduce memory for LIF neurons has not been explored so far. To address this, we propose a simple and effective solution, EfficientLIF-Net, which shares the LIF neurons across different layers and channels. Our EfficientLIF-Net achieves comparable accuracy with the standard SNNs while bringing up to ~4.3× forward memory efficiency and ~21.9× backward memory efficiency for LIF neurons. We conduct experiments on various datasets including CIFAR10, CIFAR100, TinyImageNet, ImageNet-100, and N-Caltech101. Furthermore, we show that our approach also offers advantages on Human Activity Recognition (HAR) datasets, which heavily rely on temporal information. The code has been released at https://github.com/Intelligent-Computing-Lab-Yale/EfficientLIF-Net.

60 APPLIED LIFE SCIENCES↗

Areal density and spatial resolution of high energy electron radiography

Ultrafast imaging tools are of great importance for determining the dynamic density distribution in high energy density (HED) matter. In this work, we designed a high energy electron radiography (HEER) system based on a linear electron accelerator to evaluate its capability for imaging HED matter. 40 MeV electron beams were used to image an aluminum target to study the density resolution and spatial resolution of HEER. The results demonstrate a spatial resolution of tens of micrometers. The interaction of the beams with the target and the beam transport of the transmitted electrons are further simulated with EGS5 and PARMELA codes, with the results showing good agreement with the experimental resolution. Furthermore, the experiment can be improved by adding an aperture at the Fourier plane.

areal density resolution↗

Monte Carlo-based treatment planning system calculation engine for microbeam radiation therapy

Purpose: Microbeam radiation therapy (MRT) is a synchrotron radiotherapy technique that explores the limits of the dose-volume effect. Preclinical studies have shown that MRT irradiations (arrays of 25-75-{mu}m-wide microbeams spaced by 200-400 {mu}m) are able to eradicate highly aggressive animal tumor models while healthy tissue is preserved. These promising results have provided the basis for the forthcoming clinical trials at the ID17 Biomedical Beamline of the European Synchrotron Radiation Facility (ESRF). The first step includes irradiation of pets (cats and dogs) as a milestone before treatment of human patients. Within this context, accurate dose calculations are required. The distinct features of both beam generation and irradiation geometry in MRT with respect to conventional techniques require the development of a specific MRT treatment planning system (TPS). In particular, a Monte Carlo (MC)-based calculation engine for the MRT TPS has been developed in this work. Experimental verification in heterogeneous phantoms and optimization of the computation time have also been performed. Methods: The penelope/penEasy MC code was used to compute dose distributions from a realistic beam source model. Experimental verification was carried out by means of radiochromic films placed within heterogeneous slab-phantoms. Once validation was completed, dose computations in a virtual model of a patient, reconstructed from computed tomography (CT) images, were performed. To this end, decoupling of the CT image voxel grid (a few cubic millimeter volume) to the dose bin grid, which has micrometer dimensions in the transversal direction of the microbeams, was performed. Optimization of the simulation parameters, the use of variance-reduction (VR) techniques, and other methods, such as the parallelization of the simulations, were applied in order to speed up the dose computation. Results: Good agreement between MC simulations and experimental results was achieved, even at the interfaces between two different media. Optimization of the simulation parameters and the use of VR techniques saved a significant amount of computation time. Finally, parallelization of the simulations improved even further the calculation time, which reached 1 day for a typical irradiation case envisaged in the forthcoming clinical trials in MRT. An example of MRT treatment in a dog's head is presented, showing the performance of the calculation engine. Conclusions: The development of the first MC-based calculation engine for the future TPS devoted to MRT has been accomplished. This will constitute an essential tool for the future clinical trials on pets at the ESRF. The MC engine is able to calculate dose distributions in micrometer-sized bins in complex voxelized CT structures in a reasonable amount of time. Minimization of the computation time by using several approaches has led to timings that are adequate for pet radiotherapy at synchrotron facilities. The next step will consist in its integration into a user-friendly graphical front-end.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

SU-E-T-609: Perturbation Effects of Pedicle Screws On Radiotherapy Dose Distributions

Purpose: Radiation therapy in conjunction with surgical implant fixation is a common combined treatment in case of bone metastases. However, metal implants generally used in orthopedic implants perturb radiation dose distributions. Carbon-Fiber Reinforced (CFR) PEEK material has been recently introduced for production of intramedullary screws and plates. Gold powder can be added to the CFR-PEEK material in order to enhance visibility of the screws during intraoperative imaging procedures. In this work, we investigated the perturbation effects of the pedicle screws made of CFR-PEEK, CFR-PEEK with added gold powder (CFR-PEEK-AU) and Titanium (Ti) on radiotherapy dose distributions. Methods: Monte Carlo (MC) simulations were performed using the EGSnrc code package for 6MV beams with 10×10 fields at SSD=100cm. By means of MC simulations, dose distributions around titanium, CFR- PEEK and CFR-PEEK-AU screws (manufactured by Carbo-Fix Orthopedics LTD, Israel) placed in a water phantom were calculated. The screw axis was either parallel or perpendicular to the beam axis. Dose perturbation (relative to dose in homogeneous water phantom) was assessed. Results: Maximum overdose due to backscatter was 10% for the Ti screws, 5% for the CFR-PEEK-AU screws and effectively zero for the CFR-PEEK screws. Maximum underdose due to attenuation was 25% for the Ti screws, 15% for the CFR-PEEK-AU screws and 5% for the CFR-PEEK screws. Conclusion: Titanium screws introduce the largest distortion on the radiation dose distribution. The gold powder added to the CFR-PEEK material improves visibility at the cost of increased dose perturbation. CFR-PEEK screws caused minimal alteration on the dose distribution. This can decrease possible over and underdose of adjacent tissue and thus favorably influence treatment efficiency. The use of such implants has potential clinical advantage in the treatment of neoplastic bone disease.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

2D-DIC Challenge MATLAB Analysis Code v. 1.0

This code replicates the analysis completed in the published article (see reference below) for the 2D-DIC Challenge (https://sem.org/dic-challenge/), conducted under the auspices of the Society for Experimental Mechanics (SEM). The purpose of the DIC Challenge is to provide a set of vetted and standard images, which all users and developers of Digital Image Correlation (DIC) software can use -DIC Challenge results from Sample 14 and Sample 15 of the DIC-Challenge images, and computes various statistics on the data, such as the noise, bias, and spatial resolution. P.L. Reu, E. Toussaint, E. Jones, H.A. Bruck, M. Iadicola, R. Balcaen, D.Z. Turner, T. Siebert, P. Lava, M. Simonsen (2018) Exp. Mech. 58(7):1067-1099, https://doi.org/10.1007/s11340-017-0349-0.

Jones, Elizabeth↗

Computation of Kernels for Full Waveform Seismic Inversion Using Parelasti

Full waveform inversion allows the seismologist to utilize an entire waveform and all the information it contains to help image the 3-D structure of the interior of the earth. This report summarizes the basic theory that has been developed in full waveform seismic inversion, primarily related to computation of sensitivity kernels. It then describes the implementation of this theory using Sandia Geophysics Department's Parelasti code, a 3-D full waveform elastic simulation algorithm. Finally, the code is validated using synthetics from simple homogeneous elastic earth models.

58 GEOSCIENCES↗

Validation of full-wave simulations for mode conversion of waves in the ion cyclotron range of frequencies with phase contrast imaging in Alcator C-Mod

Mode conversion of fast waves in the ion cyclotron range of frequencies (ICRF) is known to result in current drive and flow drive under optimised conditions, which may be utilized to control plasma profiles and improve fusion plasma performance. To describe these processes accurately in a realistic toroidal geometry, numerical simulations are essential. Quantitative comparison of these simulations and the actual experimental measurements is important to validate their predictions and to evaluate their limitations. The phase contrast imaging (PCI) diagnostic has been used to directly detect the ICRF waves in the Alcator C-Mod tokamak. The measurements have been compared with full-wave simulations through a synthetic diagnostic technique. Recently, the frequency response of the PCI detector array on Alcator C-Mod was recalibrated, which greatly improved the comparison between the measurements and the simulations. In this study, mode converted waves for D-{sup 3}He and D-H plasmas with various ion species compositions were re-analyzed with the new calibration. For the minority heating cases, self-consistent electric fields and a minority ion distribution function were simulated by iterating a full-wave code and a Fokker-Planck code. The simulated mode converted wave intensity was in quite reasonable agreement with the measurements close to the antenna, but discrepancies remain for comparison at larger distances.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Accurate real space iterative reconstruction (RESIRE) algorithm for tomography

Tomography has made a revolutionary impact on the physical, biological and medical sciences. The mathematical foundation of tomography is to reconstruct a three-dimensional (3D) object from a set of two-dimensional (2D) projections. As the number of projections that can be measured from a sample is usually limited by the tolerable radiation dose and/or the geometric constraint on the tilt range, a main challenge in tomography is to achieve the best possible 3D reconstruction from a limited number of projections with noise. Over the years, a number of tomographic reconstruction methods have been developed including direct inversion, real-space, and Fourier-based iterative algorithms. Here, we report the development of a real-space iterative reconstruction (RESIRE) algorithm for accurate tomographic reconstruction. RESIRE iterates between the update of a reconstructed 3D object and the measured projections using a forward and back projection step. The forward projection step is implemented by the Fourier slice theorem or the Radon transform, and the back projection step by a linear transformation. Our numerical and experimental results demonstrate that RESIRE performs more accurate 3D reconstructions than other existing tomographic algorithms, when there are a limited number of projections with noise. Furthermore, RESIRE can be used to reconstruct the 3D structure of extended objects as demonstrated by the determination of the 3D atomic structure of an amorphous Ta thin film. We expect that RESIRE can be widely employed in the tomography applications in different fields. Finally, to make the method accessible to the general user community, the MATLAB source code of RESIRE and all the simulated and experimental data are available at https://zenodo.org/record/7273314.

97 MATHEMATICS AND COMPUTING↗

Inference of experimental radial impurity transport on Alcator C-Mod: Bayesian parameter estimation and model selection

We present a fully Bayesian approach for the inference of radial profiles of impurity transport coefficients and compare its results to neoclassical, gyrofluid and gyrokinetic modeling. Using nested sampling, the Bayesian Impurity Transport InferencE (BITE) framework can handle complex parameter spaces with multiple possible solutions, offering great advantages in interpretative power and reliability with respect to previously demonstrated methods. BITE employs a forward model based on the pySTRAHL package, built on the success of the well-known STRAHL code [Dux, IPP Report, 2004], to simulate impurity transport in magnetically-confined plasmas. In this paper, we focus on calcium (Ca, Z=20) Laser Blow-Off injections into Alcator C-Mod plasmas. Multiple Ca atomic lines are diagnosed via high-resolution X-ray Imaging Crystal Spectroscopy and Vacuum Ultra-Violet measurements. We analyze a sawtoothing I-mode discharge for which neoclassical and turbulent (quasilinear and nonlinear) predictions are also obtained. Here, we find good agreement in diffusion across the entire radial extent, while turbulent convection and density profile peaking are estimated to be larger in experiment than suggested by theory. Efforts and challenges associated with the inference of experimental pedestal impurity transport are discussed.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

SU-F-T-660: Evaluating the Benefit of Using Dual-Function Fiducial Markers for In-Situ Delivery of Radiosenistizing Gold Nanoparticles During Image-Guided Radiotherapy

Purpose: Dual-function fiducials loaded with radiosensitizers, like gold nanoparticles (GNP), offer an innovative approach for ensuring geometric accuracy during image-guided radiotherapy (IGRT) and significantly increasing therapeutic efficacy due to controlled in-situ release of the radiosensitizers. This study retrospectively investigates the dosimetric benefit of using up to two such dual-function fiducial markers instead of traditional single function fiducials during IGRT. Methods: A computational code was developed to investigate the dosimetric benefit for 10 real patient tumor volumes of up to 6.5 cm diameter. The intra-tumoral space-time biodistribution of the GNP was modeled as in previous studies based on Fick’s second law. The corresponding dose-enhancement for each tumor voxel due to the GNP was also calculated for clinical 6MV beam configurations. Various loading concentrations (25–50 mg/g) were studied, as a function of GNP size, to determine potential for clinically significant dose enhancement. The time between initial implantation of dual-function fiducials to the beginning of radiotherapy was assumed to be 14 days as typical for many clinics. Results: A single dual-function fiducial could achieve at least a DEF of 1.2 for patients with tumors less than 1.4 cm diameter after 14 days. Replacing two single function fiducials with dual-function ones at the same locations achieved at least the required minimal DEF for tumors that are 2 cm diameter in 3 patients. The results also revealed dosimetrically better fiducial locations which could enable significant DEF when using one or two dual function fiducials. 2 nm sizes showed the most feasibility. Conclusion: The results highlight the potential of tumor sub-volume radiation boosting using GNP released from fiducials, and the ability to customize the DEF throughout the tumor by using two dual-function fiducials, varying the initial concentration and nanoparticle size. The results demonstrate potential for employing dual-function fiducials in the development of GNP-aided radiotherapy.

60 APPLIED LIFE SCIENCES↗

Inference of Experimental Radial Impurity Transport on Alcator C-Mod: Bayesian Parameter Estimation and Model Selection.

We present a fully Bayesian approach for the inference of radial profiles of impurity transport coefficients and compare its results to neoclassical, gyrofluid and gyrokinetic modeling. Using nested sampling, the Bayesian Impurity Transport InferencE (BITE) framework can handle complex parameter spaces with multiple possible solutions, offering great advantages in interpretative power and reliability with respect to previously demonstrated methods. BITE employs a forward model based on the pySTRAHL package, built on the success of the well-known STRAHL code [Dux, IPP Report, 2004], to simulate impurity transport in magnetically-confined plasmas. In this paper, we focus on calcium (Ca, Z=20) Laser Blow-Off injections into Alcator C-Mod plasmas. Multiple Ca atomic lines are diagnosed via high-resolution X-ray Imaging Crystal Spectroscopy and Vacuum Ultra-Violet measurements. We analyze a sawtoothing I-mode discharge for which neoclassical and turbulent (quasilinear and nonlinear) predictions are also obtained. We find good agreement in diffusion across the entire radial extent, while turbulent convection and density profile peaking are estimated to be larger in experiment than suggested by theory. Efforts and challenges associated with the inference of experimental pedestal impurity transport are discussed.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Study of the hydrodynamics of the formation of flows caused by the interaction of a shock wave with two-dimensional density perturbations on the Iskra-5 laser facility

The hydrodynamics of the flow formation due to the interaction of a shock wave with two-dimensional density perturbations is experimentally investigated on the Iskra-5 laser facility. Shadow images of a jet arising as a result of the impact of a shock wave (formed by a soft X-ray pulse from a target-illuminator) on a flat aluminium target with a blind cylindrical cavity are recorded in experiments with point-like X-ray backlighting having a photon energy of ∼4.5 keV. The sizes and mass of the jet ejected from the aluminium cavity by this shock wave are estimated. The experimental data are compared with the results of numerical simulation of the jet formation and dynamics according to the two-dimensional MID-ND2D code. (paper)

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

WITNESSING THE DIFFERENTIAL EVOLUTION OF DISK GALAXIES IN LUMINOSITY AND SIZE VIA GRAVITATIONAL LENSING

We take advantage of the magnification in size and flux of a galaxy provided by gravitational lensing to analyze the properties of 62 strongly lensed galaxies from the Sloan Lens ACS (SLACS) Survey. The sample of lensed galaxies spans a redshift range of 0.20 ≤ z ≤ 1.20 with a median redshift of z = 0.61. We use the lens modeling code LENSFIT to derive the luminosities, sizes, and Sérsic indices of the lensed galaxies. The measured properties of the lensed galaxies show a primarily compact, {sup d}isk{sup -}like population with the peaks of the size and Sérsic index distributions corresponding to ∼1.50 kpc and n ∼ 1, respectively. Comparison of the SLACS galaxies to a non-lensing, broadband imaging survey shows that a lensing survey allows us to probe a galaxy population that reaches ∼2 mag fainter. Our analysis allows us to compare the (z) = 0.61 disk galaxy sample (n ≤ 2.5) to an unprecedented local galaxy sample of ∼670, 000 SDSS galaxies at z ∼ 0.1; this analysis indicates that the evolution of the luminosity-size relation since z ∼ 1 may not be fully explained by a pure-size or pure-luminosity evolution but may instead require a combination of both. Our observations are also in agreement with recent numerical simulations of disk galaxies that show evidence of a mass-dependent evolution since z ∼ 1, where high-mass disk galaxies (M{sub *} > 10{sup 9} M{sub ☉}) evolve more in size and low-mass disk galaxies (M{sub *} ≤ 10{sup 9} M{sub ☉}) evolve more in luminosity.

79 ASTRONOMY AND ASTROPHYSICS↗

Validation of 2D Te and ne measurements made with Helium imaging spectroscopy in the volume of the TCV divertor

Abstract Multi-spectral imaging of helium atomic emission (HeMSI) has been used to create 2D poloidal maps of T e and n e in TCV’s divertor. To achieve these measurements, TCV’s MANTIS multispectral cameras (Perek et al 2019 Rev. Sci. Instrum. 90 123514) simultaneously imaged four He I lines (two singlet and two triplet) and a He II line (468 nm) from passively present He and He + . The images, which were absolutely calibrated and covered the whole divertor region, were inverted through the assumption of toroidal symmetry to create emissivity profiles and, consequently, line-ratio profiles. A collisional-radiative model (CRM) was applied to the line-ratio profiles to produce 2D poloidal maps of T e and n e . The collisional-radiative modeling was accomplished with the Goto helium CRM code (Zholobenko et al 2018 Nucl. Fusion 58 126006, Zholobenko et al 2018 Technical Report , Goto 2003 J. Quant. Spectrosc. Radiat. Transfer 76 331–44) which accounts for electron-impact excitation (EIE) and deexcitation, and electron–ion recombination (EIR) with He + . The HeMSI T e and n e measurements were compared with co-local Thomson scattering measurements. The two sets of measurements exhibited good agreement for ionizing plasmas: ( 5 eV ⩽ T e ⩽ 60 eV , and 2 × 10 18 m − 3 ⩽ n e ⩽ 3 × 10 19 m − 3 ) in the case of majority helium plasmas, and ( 10 eV ⩽ T e ⩽ 40 eV , 2 × 10 18 m − 3 ⩽ n e ⩽ 3 × 10 19 m − 3 ) in the case of majority deuterium plasmas. However, there were instances where HeMSI measurements diverged from Thomson scattering. When T e ⩽ 10 eV in majority deuterium plasmas, HeMSI deduced inaccurately high values of T e . This disagreement cannot be rectified within the CRM’s EIE and EIR framework. Second, on sporadic occasions within the private flux region, HeMSI produced erroneously high measurements of n e . Multi-spectral imaging of Helium emission has been demonstrated to produce accurate 2D poloidal maps of T e and n e within the divertor of a tokamak for plasma conditions relevant to contemporary divertor studies.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

BISON validation of FeCrAl cladding mechanical failure during simulated reactivity-initiated accident conditions*

Here, a reactivity-initiated accident (RIA) is a postulated design basis accident in light water reactors (LWRs) in which a rapid reactivity insertion induces a fission rate increase and a fuel pellet temperature rise. During RIA, the fuel pellet thermally expands and may cause pellet-cladding mechanical interaction (PCMI). Separate effects PCMI tests were performed on C26M FeCrAl cladding tube samples, introducing biaxial stress via a well understood modified burst test (MBT) system. A high-speed camera in the MBT system captured the projections, covering a 360° view of the cladding deformation and enabling a digital image correlation (DIC) method to quantify the surface strains with high fidelity. Representative hot zero-power RIA mechanical loading conditions were applied to the sample, and the test duration ranged from 20 to 500 ms at an average temperature of 573 K. BISON finite element–based fuel performance code modeling was performed against the high-fidelity DIC data produced from the MBTs. Validation calculations were conducted with 2D models and systematically compared with test data of the burst time, burst pressure, burst hoop strains, and hoop strain rates. Based on the behaviors from the separate effects test, BISON calculations satisfactorily predicted the cladding deformation behaviors. Sensitivity analysis was conducted to identify highly influential mechanical properties responsible for the cladding failure behavior during the MBT experiments. The results highlight the significance of the cladding's mechanical strength in governing cladding strain, followed by the significance of the mechanical interactions between the pellet and the cladding.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Full-wave feasibility study of magnetic diagnostic based on O-X mode conversion and oblique reflectometry imaging

An innovative millimeter wave diagnostic is proposed to measure the local magnetic field and the edge current as a function of the minor radius in the pedestal region. The idea behind such diagnostic is to localize and characterize a direction of reduced reflectivity at the O-mode cutoff layer. We modeled the wave scattering and mode-conversion processes by means of the finite-element COMSOL Multiphysics code in two dimensions (2D). Sensitivity studies were performed for parameters mocking up DIII-D plasmas. Simulations confirmed the presence of a minimum in reflectivity of an externally injected O-mode beam, and confirmed that this minimum depends on the magnetic field at the cutoff, as expected from the OX mode conversion physics. This study gives confidence in the feasibility of the diagnostic.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Approximate Bayesian computation for forward modeling in cosmology

Bayesian inference is often used in cosmology and astrophysics to derive constraints on model parameters from observations. This approach relies on the ability to compute the likelihood of the data given a choice of model parameters. In many practical situations, the likelihood function may however be unavailable or intractable due to non-gaussian errors, non-linear measurements processes, or complex data formats such as catalogs and maps. In these cases, the simulation of mock data sets can often be made through forward modeling. We discuss how Approximate Bayesian Computation (ABC) can be used in these cases to derive an approximation to the posterior constraints using simulated data sets. This technique relies on the sampling of the parameter set, a distance metric to quantify the difference between the observation and the simulations and summary statistics to compress the information in the data. We first review the principles of ABC and discuss its implementation using a Population Monte-Carlo (PMC) algorithm and the Mahalanobis distance metric. We test the performance of the implementation using a Gaussian toy model. We then apply the ABC technique to the practical case of the calibration of image simulations for wide field cosmological surveys. We find that the ABC analysis is able to provide reliable parameter constraints for this problem and is therefore a promising technique for other applications in cosmology and astrophysics. Our implementation of the ABC PMC method is made available via a public code release.

79 ASTRONOMY AND ASTROPHYSICS↗

Towards automating structural discovery in scanning transmission electron microscopy *

Abstract Scanning transmission electron microscopy is now the primary tool for exploring functional materials on the atomic level. Often, features of interest are highly localized in specific regions in the material, such as ferroelectric domain walls, extended defects, or second phase inclusions. Selecting regions to image for structural and chemical discovery via atomically resolved imaging has traditionally proceeded via human operators making semi-informed judgements on sampling locations and parameters. Recent efforts at automation for structural and physical discovery have pointed towards the use of ‘active learning’ methods that utilize Bayesian optimization with surrogate models to quickly find relevant regions of interest. Yet despite the potential importance of this direction, there is a general lack of certainty in selecting relevant control algorithms and how to balance a priori knowledge of the material system with knowledge derived during experimentation. Here we address this gap by developing the automated experiment workflows with several combinations to both illustrate the effects of these choices and demonstrate the tradeoffs associated with each in terms of accuracy, robustness, and susceptibility to hyperparameters for structural discovery. We discuss possible methods to build descriptors using the raw image data and deep learning based semantic segmentation, as well as the implementation of variational autoencoder based representation. Furthermore, each workflow is applied to a range of feature sizes including NiO pillars within a La:SrMnO 3 matrix, ferroelectric domains in BiFeO 3 , and topological defects in graphene. The code developed in this manuscript is open sourced and will be released at github.com/nccreang/AE_Workflows .

47 OTHER INSTRUMENTATION↗