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At least 1,333 records · Page 74

Integrating Earth Observations and Socioeconomic Data to Address Health, Equity, and Environmental Justice

Access to reliable data about the characteristics of populations is a crucial component of decision making, policy development, and the assessment of progress towards strategic goals. Social determinants of health provide insight into the status of social and economic conditions within populations that have profound effects on public health, equity, and vulnerability. International frameworks such as the Sustainable Development Goals (SDGs) fundamentally focus on equality, but to efficiently address targets and indicators, socioeconomic data and Earth observations must be integrated to help identify populations most vulnerable to the impacts of climate change, natural disasters, health disparities, and poor policy planning. The ability to identify vulnerable populations with data analysis has the potential to empower community stakeholders with spatial awareness needed to inform decision-making that addresses equity and environmental justice issues within their communities. The EPA defines environmental justice (EJ) as “the fair treatment and meaningful involvement of all people regardless of race, color, national origin, or income with respect to the development, implementation and enforcement of environmental laws, regulations and policies.” NASA’s Earth Science Division (ESD) recognizes the benefits that Earth observations with NASA satellites create by equipping individuals with the knowledge to address community challenges. NASA’s Socioeconomic Data and Applications Center (SEDAC) supports the integration of socioeconomic and Earth science data as an “informational gateway.” This integration of data is advancing health, equity, and environmental justice initiatives.

Natasha Johnson-Griffin↗

A Possible Magnetar Nature for IGR J16358-4726

We present detailed spectral and timing analysis of the hard X-ray transient IGR J16358-4726 using multisatellite archival observations. A study of the source flux time history over 6 yr suggests that lower luminosity transient outbursts can be occurring in intervals of at most 1 yr. Joint spectral fits of the higher luminosity outburst using simultaneous Chandra ACIS and INTEGRAL ISGRI data reveal a spectrum well described by an absorbed power-law model with a high-energy cutoff plus an Fe line. We detected the 1.6 hr pulsations initially reported using Chandra ACIS also in the INTEGRAL ISGRI light curve and in subsequent XMM-Newton observations. Using the INTEGRAL data, we identified a spin-up of 94 s (P(sup(.)) = 1.6 x 10(exp -4), which strongly points to a neutron star nature for IGR J16358-4726. Assuming that the spin-up is due to disk accretion, we estimate that the source magnetic field ranges between 10(exp 13) and 10(exp 15) G, depending on its distance, possibly supporting a magnetar nature for IGR J16358-4726.

Patel, S. K.↗

A distributed data base management system

Major system design features of a distributed data management system for the NASA Deep Space Network (DSN) designed for continuous two-way deep space communications are described. The reasons for which the distributed data base utilizing third-generation minicomputers is selected as the optimum approach for the DSN are threefold: (1) with a distributed master data base, valid data is available in real-time to support DSN management activities at each location; (2) data base integrity is the responsibility of local management; and (3) the data acquisition/distribution and processing power of a third-generation computer enables the computer to function successfully as a data handler or as an on-line process controller. The concept of the distributed data base is discussed along with the software, data base integrity, and hardware used. The data analysis/update constraint is examined.

Bryan, A. I.↗

Prediction of plant complex traits via integration of multi-omics data

The formation of complex traits is the consequence of genotype and activities at multiple molecular levels. However, connecting genotypes and these activities to complex traits remains challenging. Here, we investigate whether integrating genomic, transcriptomic, and methylomic data can improve prediction for six Arabidopsis traits. We find that transcriptome- and methylome-based models have performances comparable to those of genome-based models. However, models built for flowering time using different omics data identify different benchmark genes. Nine additional genes identified as important for flowering time from our models are experimentally validated as regulating flowering. Gene contributions to flowering time prediction are accession-dependent and distinct genes contribute to trait prediction in different genotypes. Models integrating multi-omics data perform best and reveal known and additional gene interactions, extending knowledge about existing regulatory networks underlying flowering time determination. These results demonstrate the feasibility of revealing molecular mechanisms underlying complex traits through multi-omics data integration.

59 BASIC BIOLOGICAL SCIENCES↗

Integrated Framework of Multisource Data Fusion for Outage Location in Looped Distribution Systems

Accurate outage location is essential for expediting post-outage power restoration, minimizing outage duration, and enhancing the resilience of distribution networks. With the advent of advanced metering infrastructure, data-driven outage location methods have significantly advanced beyond traditional approaches that rely on manual inspections. However, existing methods still face critical challenges, like reliance on single-source data, limited ability to handle partially observable systems or difficulties with loop networks. To the best of our knowledge, no single approach has comprehensively addressed all of these challenges at once. To this end, this paper proposes a comprehensive multisource data fusion framework for outage locations via probabilistic graph networks. The framework consists of three key phases. First, a novel method for reconstituting distribution networks with loops is developed, transforming looped networks into multiple radial subnetworks that retain all outage causalities of the original network. Second, Bayesian network (BN) models are established for each subnetwork, integrating multiple data sources and network structures. Finally, a joint Gibbs sampling mechanism, featuring forward and backward information flow, is designed to merge data from separate BN models and maximize the utilization of limited evidence, ensuring accurate outage location identification. In conclusion, the framework was validated on two modified public test systems, and comparative studies confirmed its effectiveness.

24 POWER TRANSMISSION AND DISTRIBUTION↗

A Qualitative Readiness-Requirements Assessment Model for Enterprise Big-Data Infrastructure Investment

In the last three decades, there has been an exponential growth in the area of information technology providing the information processing needs of data-driven businesses in government, science, and private industry in the form of capturing, staging, integrating, conveying, analyzing, and transferring data that will help knowledge workers and decision makers make sound business decisions. Data integration across enterprise warehouses is one of the most challenging steps in the big data analytics strategy. Several levels of data integration have been identified across enterprise warehouses: data accessibility, common data platform, and consolidated data model. Each level of integration has its own set of complexities that requires a certain amount of time, budget, and resources to implement. Such levels of integration are designed to address the technical challenges inherent in consolidating the disparate data sources. In this paper, we present a methodology based on industry best practices to measure the readiness of an organization and its data sets against the different levels of data integration. We introduce a new Integration Level Model (ILM) tool, which is used for quantifying an organization and data system s readiness to share data at a certain level of data integration. It is based largely on the established and accepted framework provided in the Data Management Association (DAMA-DMBOK). It comprises several key data management functions and supporting activities, together with several environmental elements that describe and apply to each function. The proposed model scores the maturity of a system s data governance processes and provides a pragmatic methodology for evaluating integration risks. The higher the computed scores, the better managed the source data system and the greater the likelihood that the data system can be brought in at a higher level of integration.

Big data↗

The integration of remote sensing data into global weather prediction, wave forecasting, and ocean circulation computer based systems

Data from infrared imaging systems and satellite infrared spectrometer (SIRS) for determining sea surface temperature and the atmospheric structure in cloudless areas over the oceans are discussed. Although some interpretations differ, it is clear that simultaneous measurements of radar sea return and passive microwave temperature will provide estimates of the wind speed, and perhaps wind direction, over the oceans, especially in cloudless areas, for a wide range of wind speeds. The problem of integrating the data that would be obtained by a spacecraft, especially one with a combination radar-radiometer, into global analysis procedures for meteorological, wave, and oceanographic predictions is described.

Pierson, W. J., Jr.↗

FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation

Nucleotide and protein sequence feature annotations are essential to understand biology on the genomic, transcriptomic, and proteomic level. Using Semantic Web technologies to query biological annotations, there was no standard that described this potentially complex location information as subject-predicate-object triples. In this paper, we have developed an ontology, the Feature Annotation Location Description Ontology (FALDO), to describe the positions of annotated features on linear and circular sequences. FALDO can be used to describe nucleotide features in sequence records, protein annotations, and glycan binding sites, among other features in coordinate systems of the aforementioned “omics” areas. Using the same data format to represent sequence positions that are independent of file formats allows us to integrate sequence data from multiple sources and data types. The genome browser JBrowse is used to demonstrate accessing multiple SPARQL endpoints to display genomic feature annotations, as well as protein annotations from UniProt mapped to genomic locations. Our ontology allows users to uniformly describe – and potentially merge – sequence annotations from multiple sources. Finally, data sources using FALDO can prospectively be retrieved using federalised SPARQL queries against public SPARQL endpoints and/or local private triple stores.

59 BASIC BIOLOGICAL SCIENCES↗

Experimental Systems-Biology Approaches for Clostridia-Based Bioenergy Production

This is the final project report for project "Experimental Systems-Biology Approaches for Clostridia-Based Bioenergy Production" for the funding period of 9/1/12 to 2/28/2015 (three years with a 6-month no-cost extension) OVERVIEW AND PROJECT GOALS The bottleneck of achieving higher rates and titers of toxic metabolites (such as solvents and carboxylic acids that can used as biofuels or biofuel precursors) can be overcome by engineering the stress response system. Thus, understanding and modeling the response of cells to toxic metabolites is a problem of great fundamental and practical significance. In this project, our goal is to dissect at the molecular systems level and build models (conceptual and quantitative) for the stress response of C. acetobutylicum (Cac) to its two toxic metabolites: butanol (BuOH) and butyrate (BA). Transcriptional (RNAseq and microarray based), proteomic and fluxomic data and their analysis are key requirements for this goal. Transcriptional data from mid-exponential cultures of Cac under 4 different levels of BuOH and BA stress was obtained using both microarrays (Papoutsakis group) and deep sequencing (RNAseq; Meyers and Papoutsakis groups). These two sets of data do not only serve to validate each other, but are also used for identification of stress-induced changes in transcript levels, small regulatory RNAs, & in transcriptional start sites. Quantitative proteomic data (Lee group), collected using the iTRAQ technology, are essential for understanding of protein levels and turnover under stress and the various protein-protein interactions that orchestrate the stress response. Metabolic flux changes (Antoniewicz group) of core pathways, which provide important information on the re-allocation of energy and carbon resources under metabolite stress, were examined using 13C-labelled chemicals. Omics data are integrated at different levels and scales. At the metabolic-pathway level, omics data are integrated into a 2nd generation genome-scale model (GSM) (Maranas group). Omics data are also integrated using bioinformatics (Wu and Huang group), whereby regulatory details of gene and protein expression, protein-protein interactions and metabolic flux regulation are incorporated. The PI (Papoutsakis) facilitated project integration through monthly meeting and reports, conference calls, and collaborative manuscript preparation. The five groups collaborated extensively and made a large number of presentations in national and international meetings. It has also published several papers, with several more in the preparation stage. Several PhD, MS and postdoctoral students were trained as part of this collaborative and interdisciplinary project.

09 BIOMASS FUELS↗

From Data to Models and Analytics: An Integrated Scientific Computing Platform to Accelerate Environmental Research SBIR Phase I (Final Technical Report)

Phase I research was conducted to investigate the technical feasibility of an integrated open source platform GeoLib to provide turnkey solutions for model-data integration for environmental systems science (ESS), using modern web technologies, advances in HPC and cloud computing and high-performance visualization. A key feature of our platform is that it minimizes and automates data movement between data storage and computing systems. Another critical feature of the design is that it enables users to perform high-fidelity post-processing by performing high-performance visualization server-side and in-situ on the compute cluster close to the data. The investigation, which was performed over a 12-month period ending April 2019, centered on developing prototype software to demonstrate the key enabling technologies required for this system. This included: (i) rapid access to data from multiple remote sources, via a unified data interface; (ii) software for scalable geospatial visualization of raster, vector, and point cloud data on the web; (iii) development of an easy-to-use API for creating simulation and modeling workflows; (iv) remote data visualization and processing on middle-tier servers; and (v) remote data processing on high-performance computing systems. A critical part of this work is that all of these capabilities be accessible to end users through standard desktop tools such as Project Jupyter, which is widely adopted for ESS simulation and modeling.

97 MATHEMATICS AND COMPUTING↗

Code validation of SAM using natural-circulation experimental data from the compact integral effects test (CIET) facility

The primary objective of this study is to validate the system analysis code, SAM, using experimental data from the Compact Integral Effects Test (CIET) experimental loop. SAM is a modern system analysis code being developed at Argonne National Laboratory for safety analysis of designs for advanced non-light water reactors (non-LWRs), such as sodium-cooled fast reactors, high-temperature gas-cooled reactors, and fluoride salt-cooled high-temperature reactors (FHRs). To support SAM code development for the wide range of non-LWR applications, it is of paramount importance to validate the code against experiments highly relevant to these reactor concepts. Additionally, the CIET facility, which was designed to reproduce the thermal-hydraulics response of FHRs under both forced- and natural-circulation conditions, has been identified and selected as one of the benchmark test facilities for SAM code validation. In this study, two sets of available CIET tests were selected for SAM code validation purposes, namely, power step change transient tests and steady-state natural-circulation tests. For all selected tests, SAM-predicted results show very good agreement with experimental data. The successful validation of SAM against these selected CIET experiments demonstrates that the computer code is well suited for thermal-hydraulics analysis of FHR designs.

42 ENGINEERING↗

Unified feature association networks through integration of transcriptomic and proteomic data

High-throughput multi-omics studies and corresponding network analyses of multi-omic data have rapidly expanded their impact over the last 10 years. As biological features of different types (e.g. transcripts, proteins, metabolites) interact within cellular systems, the greatest amount of knowledge can be gained from networks that incorporate multiple types of -omic data. However, biological and technical sources of variation diminish the ability to detect cross-type associations, yielding networks dominated by communities comprised of nodes of the same type. We describe here network building methods that can maximize edges between nodes of different data types leading to integrated networks. We systematically rank several network inference methods and demonstrate that, in many cases, using a random forest method, GENIE3, produces the most integrated networks. This increase in integration does not come at the cost of accuracy as GENIE3 produces networks of approximately the same quality as the other network inference methods tested here. Using GENIE3, we also infer networks representing antibody-mediated Dengue virus cell invasion and receptor-mediated Dengue virus invasion. A number of functional pathways showed centrality differences between the two networks including genes responding to both GM-CSF and IL-4, which had a higher centrality value in an antibody-mediated vs. receptor-mediated Dengue network. Because a biological system involves the interplay of many different types of molecules, incorporating multiple data types into networks will improve their use as models of biological systems. The methods explored here are some of the first to specifically highlight and address the challenges associated with how such multi-omic networks can be assembled and how the greatest number of interactions can be inferred from different data types. The resulting networks can lead to the discovery of new host response patterns and interactions during viral infection, generate new hypotheses of pathogenic mechanisms and confirm disease associated mechanisms of disease.

59 BASIC BIOLOGICAL SCIENCES↗

SAM Code Validation using the Compact Integral Effects Test (CIET) Experimental Data

The primary objective of this study is to validate the system analysis code, SAM, using experimental data from the Compact Integral Effects Test (CIET) facility. The System Analysis Module (SAM) is an advanced and modern system analysis tool being developed at Argonne National Laboratory under the U.S. DOE Office of Nuclear Energy’s Nuclear Energy Advanced Modeling and Simulation (NEAMS) program. Originally aiming at supporting sodium fast reactor (SFR) design, it is now extended to cover other non-light water reactor (non-LWR) concepts, such as high-temperature gas-cooled reactor (HTGR) designs, molten salt-fueled, and molten salt-cooled reactor designs. To support SAM code development for the wide range of non-LWR applications, it is of paramount importance to validate the code against experiments relevant to these reactor concepts. The Compact Integral Effects Test (CIET) facility, which was designed to reproduce the thermal-hydraulics response of fluoride salt-cooled high-temperature reactors (FHR) under both forced- and natural-circulation conditions, has been identified and selected as one of benchmark test facilities for SAM code validation. Among available CIET experiments, three sets of them with distinctive characteristics were selected for SAM code validation purpose. The three sets experiments are: 1) Power step change transient tests; 2) DHX-DRACS natural circulation tests; and 3) heater frequency response tests. For all tests, steady-state or transient, SAM-predicted results show very good agreement with experimental data. The successful validation of SAM against these selected CIET experiments demonstrates that the computer code is well suited for thermal-hydraulics analysis of FHR designs.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

An Overview of the International Reactor Physics Experiment Evaluation Project

Interest in high-quality integral benchmark data is increasing as efforts to quantify and reduce calculational uncertainties associated with advanced modeling and simulation accelerate to meet the demands of next generation reactor and advanced fuel cycle concepts. Two Organization for Economic Cooperation and Development (OECD) Nuclear Energy Agency (NEA) activities, the International Criticality Safety Benchmark Evaluation Project (ICSBEP), initiated in 1992, and the International Reactor Physics Experiment Evaluation Project (IRPhEP), initiated in 2003, have been identifying existing integral experiment data, evaluating those data, and providing integral benchmark specifications for methods and data validation for nearly two decades. Data provided by those two projects will be of use to the international reactor physics, criticality safety, and nuclear data communities for future decades. An overview of the IRPhEP and a brief update of the ICSBEP are provided in this paper.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

A Client/Server Architecture for Supporting Science Data Using EPICS Version 4

The Phase 1 grant that serves as a precursor to this proposal, prototyped complex storage techniques for high speed structured data that is being produced in accelerator diagnostics and beam line experiments. It demonstrates the technologies that can be used to archive and retrieve complex data structures and provide the performance required by our new accelerators, instrumentations, and detectors. Phase 2 is proposed to develop a high-performance platform for data acquisition and analysis to provide physicists and operators a better understanding of the beam dynamics. This proposal includes developing a platform for reading 109 MHz data at 10 KHz rates through a multicore front end processor, archiving the data to an archive repository that is then indexed for fast retrieval. The data is then retrieved from this data archive, integrated with the scalar data, to provide data sets to client applications for analysis, use in feedback, and to aid in identifying problem with the instrumentation, plant, beam steering, or model. This development is built on EPICS version 4 , which is being successfully deployed to implement physics applications. Through prior SBIR grants, EPICS version 4 has a solid communication protocol for middle layer services (PVAccess), structured data representation and methods for efficient transportation and access (PVData), an operational hierarchical record environment (JAVA IOC), and prototypes for standard structured data (Normative Types). This work was further developed through project funding to successfully deploy the first service based physics application environment with demonstrated services that provide arbitrary object views, save sets, model, lattice, and unit conversion. Thin client physics applications have been developed in Python that implement quad centering, orbit display, bump control, and slow orbit feedback. This service based architecture has provided a very modular and robust environment that enables commissioning teams to rapidly develop and deploy small scripts that build on powerful services. These services are all built on relational database data stores and scalar data. The work proposed herein, builds on these previous successes to provide data acquisition of high speed data for online analysis clients.

43 PARTICLE ACCELERATORS↗

Use of remote sensing techniques for inventorying and planning utilization of land resources in South Dakota

The basic procedures for interpreting remote sensing imagery to rapidly develop general soils and land use inventories were developed and utilized in Pennington County, South Dakota. These procedures and remote sensing data products were illustrated and explained to many user groups, some of whom are interested in obtaining similar data. The general soils data were integrated with land soils data supplied by the county director of equalization to prepare a land value map. A computer print-out of this map indicating a land value for each quarter section is being used in tax reappraisal of Pennington County. The land use data provided the land use planners with the present use of land in Pennington County. Additional uses of remote sensing applications are also discussed including tornado damage assessment, hail damage evaluation, and presentation of soil and land value information on base maps assembled from ERTS-1 imagery.

Myers, V. I.↗

The Environment for Application Software Integration and Execution (EASIE), version 1.0. Volume 2: Program integration guide

The Environment for Application Software Integration and Execution, EASIE, provides a methodology and a set of software utility programs to ease the task of coordinating engineering design and analysis codes. EASIE was designed to meet the needs of conceptual design engineers that face the task of integrating many stand-alone engineering analysis programs. Using EASIE, programs are integrated through a relational data base management system. In volume 2, the use of a SYSTEM LIBRARY PROCESSOR is used to construct a DATA DICTIONARY describing all relations defined in the data base, and a TEMPLATE LIBRARY. A TEMPLATE is a description of all subsets of relations (including conditional selection criteria and sorting specifications) to be accessed as input or output for a given application. Together, these form the SYSTEM LIBRARY which is used to automatically produce the data base schema, FORTRAN subroutines to retrieve/store data from/to the data base, and instructions to a generic REVIEWER program providing review/modification of data for a given template. Automation of these functions eliminates much of the tedious, error prone work required by the usual approach to data base integration.

Jones, Kennie H.↗

Development of an Information Fusion System for Engine Diagnostics and Health Management

Aircraft gas-turbine engine data are available from a variety of sources including on-board sensor measurements, maintenance histories, and component models. An ultimate goal of Propulsion Health Management (PHM) is to maximize the amount of meaningful information that can be extracted from disparate data sources to obtain comprehensive diagnostic and prognostic knowledge regarding the health of the engine. Data Fusion is the integration of data or information from multiple sources, to achieve improved accuracy and more specific inferences than can be obtained from the use of a single sensor alone. The basic tenet underlying the data/information fusion concept is to leverage all available information to enhance diagnostic visibility, increase diagnostic reliability and reduce the number of diagnostic false alarms. This paper describes a basic PHM Data Fusion architecture being developed in alignment with the NASA C17 Propulsion Health Management (PHM) Flight Test program. The challenge of how to maximize the meaningful information extracted from disparate data sources to obtain enhanced diagnostic and prognostic information regarding the health and condition of the engine is the primary goal of this endeavor. To address this challenge, NASA Glenn Research Center (GRC), NASA Dryden Flight Research Center (DFRC) and Pratt & Whitney (P&W) have formed a team with several small innovative technology companies to plan and conduct a research project in the area of data fusion as applied to PHM. Methodologies being developed and evaluated have been drawn from a wide range of areas including artificial intelligence, pattern recognition, statistical estimation, and fuzzy logic. This paper will provide a broad overview of this work, discuss some of the methodologies employed and give some illustrative examples.

Volponi, Allan J.↗