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At least 1,333 records · Page 74

Numerical Prediction of CCV in a PFI Engine using a Parallel LES Approach

Cycle-to-cycle variability (CCV) is detrimental to IC engine operation and can lead to partial burn, misfire, and knock. Predicting CCV numerically is extremely challenging due to two key reasons. Firstly, high-fidelity methods such as large eddy simulation (LES) are required to accurately resolve the incylinder turbulent flowfield both spatially and temporally. Secondly, CCV is experienced over long timescales and hence the simulations need to be performed for hundreds of consecutive cycles. Ameen et al. (Int. J. Eng. Res., 2017) developed a parallel perturbation model (PPM) approach to dissociate this long time-scale problem into several shorter timescale problems. The strategy is to perform multiple single-cycle simulations in parallel by effectively perturbing the initial velocity field based on the intensity of the in-cylinder turbulence. This strategy was demonstrated for motored engine and it was shown that the mean and variance of the in-cylinder flowfield was captured reasonably well by this approach. In the present study, this PPM approach is extended to simulate the CCV in a fired port-fuel injected (PFI) SI engine. Two operating conditions are considered – a medium CCV operating case corresponding to 2500 rpm and 16 bar BMEP and a low CCV case corresponding to 4000 rpm and 12 bar BMEP. The predictions from this approach are also shown to be similar to the consecutive LES cycles. Both the consecutive and PPM LES cycles are observed to under-predict the variability in the early stage of combustion. The parallel approach slightly underpredicts the cyclic variability at all stages of combustion as compared to the consecutive LES cycles. However, it is shown that the parallel approach is able to predict the coefficient of variation (COV) of the in-cylinder pressure and burn rate related parameters with sufficient accuracy, and is also able to predict the qualitative trends in CCV with changing operating conditions. The convergence of the statistics predicted by the PPM approach with respect to the number of consecutive cycles required for each parallel simulation is also investigated. It is shown that this new approach is able to give accurate predictions of the CCV in fired engines in less than one-tenth of the time required for the conventional approach of simulating consecutive engine cycles.

Ameen, Muhsin M↗

Generalizing the self-healing diffusion Monte Carlo approach to finite temperature: A path for the optimization of low-energy many-body bases

A statistical method is derived for the calculation of thermodynamic properties of many-body systems at low temperatures. This method is based on the self-healing diffusion Monte Carlo method for complex functions [F. A. Reboredo, J. Chem. Phys. 136, 204101 (2012)] and some ideas of the correlation function Monte Carlo approach [D. M. Ceperley and B. Bernu, J. Chem. Phys. 89, 6316 (1988)]. In order to allow the evolution in imaginary time to describe the density matrix, we remove the fixed-node restriction using complex antisymmetric guiding wave functions. In the process we obtain a parallel algorithm that optimizes a small subspace of the many-body Hilbert space to provide maximum overlap with the subspace spanned by the lowest-energy eigenstates of a many-body Hamiltonian. We show in a model system that the partition function is progressively maximized within this subspace. We show that the subspace spanned by the small basis systematically converges towards the subspace spanned by the lowest energy eigenstates. Possible applications of this method for calculating the thermodynamic properties of many-body systems near the ground state are discussed. The resulting basis can also be used to accelerate the calculation of the ground or excited states with quantum Monte Carlo.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

FDTD: Solving 1+1D delay PDE in parallel

We present a proof of concept for solving a 1+1D complex-valued, delay partial differential equation (PDE) that emerges in the study of waveguide quantum electrodynamics (QED) by adapting the finite-difference time-domain (FDTD) method. The delay term is spatially non-local, rendering conventional approaches such as the method of lines inapplicable. Here, we show that by properly designing the grid and by supplying the (partial) exact solution as the boundary condition, the delay PDE can be numerically solved. In addition, we demonstrate that while the delay imposes strong data dependency, multi-thread parallelization can nevertheless be applied to such a problem. Our code provides a numerically exact solution to the time-dependent multi-photon scattering problem in waveguide QED.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Reduce Operations: Send Volume Balancing While Minimizing Latency

Communication hypergraph model was introduced in a two-phase setting for encapsulating multiple communication cost metrics (bandwidth and latency), which are proven to be important in parallelizing irregular applications. In the first phase, computational-task-to-processor assignment is performed with the objective of minimizing total volume while maintaining computational load balance. In the second phase, communication-task-to-processor assignment is performed with the objective of minimizing total number of messages while maintaining communication-volume balance. The reduce-communication hypergraph model suffers from failing to correctly encapsulate send-volume balancing. We propose a novel vertex weighting scheme that enables part weights to correctly encode send-volume loads of processors for send-volume balancing. The model also suffers from increasing the total communication volume during partitioning. To decrease this increase, we propose a method that utilizes the recursive bipartitioning framework and refines each bipartition by vertex swaps. For performance evaluation, we consider column-parallel SpMV, which is one of the most widely known applications in which the reduce-task assignment problem arises. Extensive experiments on 313 matrices show that, compared to the existing model, the proposed models achieve considerable improvements in all communication cost metrics. Furthermore, these improvements lead to an average decrease of 30% in parallel SpMV time on 512 processors for 70 matrices with high irregularity.

97 MATHEMATICS AND COMPUTING↗

Accurate derivative evaluation for any Grad–Shafranov solver

We present a numerical scheme that can be combined with any fixed boundary finite element based Poisson or Grad–Shafranov solver to compute the first and second partial derivatives of the solution to these equations with the same order of convergence as the solution itself. At the heart of our scheme is an efficient and accurate computation of the Dirichlet to Neumann map through the evaluation of a singular volume integral and the solution to a Fredholm integral equation of the second kind. Our numerical method is particularly useful for magnetic confinement fusion simulations, since it allows the evaluation of quantities such as the magnetic field, the parallel current density and the magnetic curvature with much higher accuracy than has been previously feasible on the affordable coarse grids that are usually implemented.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

SU-D-206-02: Evaluation of Partial Storage of the System Matrix for Cone Beam Computed Tomography Using a GPU Platform

Purpose: Iterative reconstruction algorithms in computed tomography (CT) require a fast method for computing the intersections between the photons’ trajectories and the object, also called ray-tracing or system matrix computation. This work evaluates different ways to store the system matrix, aiming to reconstruct dense image grids in reasonable time. Methods: We propose an optimized implementation of the Siddon’s algorithm using graphics processing units (GPUs) with a novel data storage scheme. The algorithm computes a part of the system matrix on demand, typically, for one projection angle. The proposed method was enhanced with accelerating options: storage of larger subsets of the system matrix, systematic reuse of data via geometric symmetries, an arithmetic-rich parallel code and code configuration via machine learning. It was tested on geometries mimicking a cone beam CT acquisition of a human head. To realistically assess the execution time, the ray-tracing routines were integrated into a regularized Poisson-based reconstruction algorithm. The proposed scheme was also compared to a different approach, where the system matrix is fully pre-computed and loaded at reconstruction time. Results: Fast ray-tracing of realistic acquisition geometries, which often lack spatial symmetry properties, was enabled via the proposed method. Ray-tracing interleaved with projection and backprojection operations required significant additional time. In most cases, ray-tracing was shown to use about 66 % of the total reconstruction time. In absolute terms, tracing times varied from 3.6 s to 7.5 min, depending on the problem size. The presence of geometrical symmetries allowed for non-negligible ray-tracing and reconstruction time reduction. Arithmetic-rich parallel code and machine learning permitted a modest reconstruction time reduction, in the order of 1 %. Conclusion: Partial system matrix storage permitted the reconstruction of higher 3D image grid sizes and larger projection datasets at the cost of additional time, when compared to the fully pre-computed approach. This work was supported in part by the Fonds de recherche du Quebec - Nature et technologies (FRQ-NT). The authors acknowledge partial support by the CREATE Medical Physics Research Training Network grant of the Natural Sciences and Engineering Research Council of Canada (Grant No. 432290).

60 APPLIED LIFE SCIENCES↗

Computational design and analysis of modular cells for large libraries of exchangeable product synthesis modules

Microbial metabolism can be harnessed to produce a large library of useful chemicals from renewable resources such as plant biomass. However, it is laborious and expensive to create microbial biocatalysts to produce each new product. To tackle this challenge, we have recently developed modular cell (ModCell) design principles that enable rapid generation of production strains by assembling a modular (chassis) cell with exchangeable production modules to achieve overproduction of target molecules. Previous computational ModCell design methods are limited to analyze small libraries of around 20 products. In this study, we developed a new computational method, named ModCell-HPC, that can design modular cells for large libraries with hundreds of products with a highly-parallel and multi-objective evolutionary algorithm and enable us to elucidate modular design properties. We demonstrated ModCell-HPC to design Escherichia coli modular cells towards a library of 161 endogenous production modules. From these simulations, we identified E. coli modular cells with few genetic manipulations that can produce dozens of molecules in a growth-coupled manner with different types of fermentable sugars. These designs revealed key genetic manipulations at the chassis and module levels to accomplish versatile modular cells, involving not only in the removal of major by-products but also modification of branch points in the central metabolism. We further found that the effect of various sugar degradation on redox metabolism results in lower compatibility between a modular cell and production modules for growth on pentoses than hexoses. To better characterize the degree of compatibility, we developed a method to calculate the minimal set cover, identifying that only three modular cells are all needed to couple with up 85 compatible production modules. By determining the unknown compatibility contribution metric, we further elucidated the design features that allow an existing modular cell to be re-purposed towards production of new molecules. Altogether, ModCell-HPC is a useful tool for understanding modularity of biological systems and guiding more efficient and generalizable design of modular cells that help reduce research and development cost in biocatalysis.

59 BASIC BIOLOGICAL SCIENCES↗

A novel approach to increase accuracy in remotely sensed evapotranspiration through basin water balance and flux tower constraints

Remote sensing-derived evapotranspiration (RSET) products capture the spatiotemporal variations of evapotranspiration (ET) from field to basin scales with unprecedented details. However, their accuracy varies across RSET estimation methods and diverse hydroclimate regions. While ET modeling efforts to account for biophysical processes and controlling parameters have made good progress in recent years, a parallel approach of integrating in-situ ET with RSET could reduce biases in RSET products. Basin water balance ET (WBET) and flux tower ET are widely applied to evaluate RSET accuracy, yet such ET measurements are rarely used for RSET bias corrections, especially for large area applications. To address this issue, we propose a novel approach: the water balance equivalence (WABE) method, which generates spatially continuous WBET for correcting biases in RSET products. The WABE method computes synthetic WBET by integrating observed WBET and flux tower-derived FLUXCOM ET, which fills the spatial gaps of observed WBET and generates a spatially continuous WBET dataset. Synthetic WBET (2002–2015 annual average) of eight-digit hydrologic unit code (HUC8) basins across the conterminous United States (CONUS), constituting 44 % (887 out of 2035 basins) of CONUS basins, was determined within 2.0 % (RMSE = 12 %) of observed WBET at CONUS and between 1–12 % (RMSE = 3–33 %) across 18 regions in CONUS. With WABE-based bias corrections, the overall annual bias of RSET decreased from 10 % (RMSE = 34 %) to 6 % (RMSE = 26 %) across 37 flux tower sites. The WABE method offers a new approach for RSET accuracy improvement and shows great promise for large area implementations with a potential to yield substantial benefits for building accurate basin water budgets and water management decisions.

Khand, Kul↗

Focal construct geometry for high intensity energy dispersive x-ray diffraction based on x-ray capillary optics

We presented a focal construct geometry (FCG) method for high intensity energy dispersive X-ray diffraction by utilizing a home-made ellipsoidal single-bounce capillary (ESBC) and a polycapillary parallel X-ray lens (PPXRL). The ESBC was employed to focus the X-rays from a conventional laboratory source into a small focal spot and to produce an annular X-ray beam in the far-field. Additionally, diffracted polychromatic X-rays were confocally collected by the PPXRL attached to a stationary energy-resolved detector. Our FCG method based on ESBC and PPXRL had achieved relatively high intensity diffraction peaks and effectively narrowed the diffraction peak width which was helpful in improving the potential d-spacing resolution for material phase analysis.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Tomographic analysis of tangential viewing cameras (invited)

Many tokamaks now use visible light cameras to observe plasma-wall interactions and integrated line emission. The DIII-D coherence imaging spectroscopy diagnostic cameras image interferograms that encode line integrated velocity. By modeling the 2D camera image pixels as line of sight integrals through an axisymmetric discrete grid, it is possible to do tomographic analysis to determine the local plasma line emissivity and parallel velocity. Approaches to solve the inverse problem posed by these tangential viewing cameras are presented. The inversion begins with calculation of the sparse response matrix that encompasses all the geometry and diagnostic information and reduces the process of image formation to a sparse matrix-vector multiply. Our report includes techniques for determining the detailed geometry of the camera views and methods for handling physical quantities that vary spatially. Additionally, the size of the response matrix has driven the development of capability to distribute the coarse parallel calculation across a heterogeneous cluster of computers on the Energy Sciences Network. Iterative techniques are then used to solve the sparse matrix-vector linear system

47 OTHER INSTRUMENTATION↗

Numerical Prediction of Cyclic Variability in a Spark Ignition Engine Using a Parallel Large Eddy Simulation Approach

Cycle-to-cycle variability (CCV) is detrimental to IC engine operation and can lead to partial burn, misfire, and knock. Predicting CCV numerically is extremely challenging due to two key reasons. First, high-fidelity methods such as large eddy simulation (LES) are required to accurately resolve the in-cylinder turbulent flow field both spatially and temporally. Second, CCV is experienced over long timescales and hence the simulations need to be performed for hundreds of consecutive cycles. Ameen et al. (2017, "Parallel Methodology to Capture Cyclic Variability in Motored Engines,"Int. J. Engine Res., 18(4), pp. 366-377.) developed a parallel perturbation model (PPM) approach to dissociate this long time-scale problem into several shorter time-scale problems. This strategy was demonstrated for motored engine and it was shown that the mean and variance of the in-cylinder flow field was captured reasonably well by this approach. In the present study, this PPM approach is extended to simulate the CCV in a fired port-fuel injected (PFI) spark ignition (SI) engine. The predictions from this approach are also shown to be similar to the consecutive LES cycles. It is shown that the parallel approach is able to predict the coefficient of variation (COV) of the in-cylinder pressure and burn raterelated parameters with sufficient accuracy, and is also able to predict the qualitative trends in CCV with changing operating conditions. It is shown that this new approach is able to give accurate predictions of the CCV in fired engines in less than one-tenth of the time required for the conventional approach of simulating consecutive engine cycles.

Ameen, Muhsin M.↗

Acceleration and sensitivity analysis of lattice kinetic Monte Carlo simulations using parallel processing and rate constant rescaling

Kinetic Monte Carlo (KMC) simulation provides insights into catalytic reactions unobtainable with either experiments or mean-field microkinetic models. Sensitivity analysis of KMC models assesses the robustness of the predictions to parametric perturbations and identifies rate determining steps in a chemical reaction network. Stiffness in the chemical reaction network, a ubiquitous feature, demands lengthy run times for KMC models and renders efficient sensitivity analysis based on the likelihood ratio method unusable. We address the challenge of efficiently conducting KMC simulations and performing accurate sensitivity analysis in systems with unknown time scales by employing two acceleration techniques: rate constant rescaling and parallel processing. We develop statistical criteria that ensure sufficient sampling of non-equilibrium steady state conditions. Our approach provides the twofold benefit of accelerating the simulation itself and enabling likelihood ratio sensitivity analysis, which provides further speedup relative to finite difference sensitivity analysis. As a result, the likelihood ratio method can be applied to real chemistry. We apply our methodology to the water-gas shift reaction on Pt(111).

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A state of the art current-septum dipole magnet

Here, the acceleration process of charged particle beams often requires the use of few acceleration stages to provide the beam with the desired energy. The extraction of the beam from one acceleration stage and the injection to the next, both require a special type of magnet which comes under the name septum magnet. Such a magnet generates a strong field in one region and a very low field in another region with the two regions separated by a very thin material (septum). The septum thickness of such a magnet should be as thin as possible to reduce the strength of other devices, like kickers, which are involved in the extraction or injection processes. A thin septum is also advantageous during the slow beam extraction process to reduce the beam losses at the septum. One of the methods which in theory can generate very large differences in field strength in adjacent field regions separated by a thin septum, is the use of two thin parallel current sheets of infinite dimensions. In practice we use other devices that can approximate such an abrupt change of the magnetic field within the septum thickness. In this paper we describe such a device, the DC current septum, we present results from the study of its electromagnetic properties, and we discuss a method to minimize the magnetic field in the region which requires a very small magnetic field. We also provide some results from the experimental measurements of the magnetic field generated by the D6 current septum magnet which is installed in the experimental beam line of the NASA’s Space Radiation Laboratory (NSRL) facility [1],[2] at Brookhaven National Laboratory (BNL). This septum magnet is part of the beam’s extraction system from the AGS-Booster into the NSRL beam line for material and biological studies.

43 PARTICLE ACCELERATORS↗

Performance and Feature Improvements in Parareal-based Power System Dynamic Simulation

In recent years, a novel Parareal-based approach has been developed for fast transient simulations of large power system interconnections. Parareal belongs to the class of Parallel-in-time algorithms for solution of systems of differential-algebraic equations in parallel over an interval of time. The selection of a reasonably fast and accurate coarse solution is crucial to improve the performance of Parareal algorithm. Semi-analytical solution methods are one promising approach to achieve this goal. They have been investigated, and some preliminary results are presented here. In addition, Parareal-based simulator has been expanded to enable co-simulation with OpenDSS, a widely used open-source distribution system simulator. Preserving the parallel nature of the Parareal approach and taking advantage of the parallel capabilities of the latest versions of OpenDSS, each distribution system can be solved in their entirety on different processors in parallel within the main Parareal simulator. This paper also presents the structure of the transmission and distribution co-simulation and some results with different dynamic models of inverter-based resources in the distribution systems.

Park, Byungkwon↗

Developing A Large Time Step, Robust, and Low Communication Multi-Moment PDE Integration Scheme for Exascale Applications

The Boundary Averaged Multi-moment Constrained finite-Volume (BA-MCV) method is de- rived, explained, and evaluated for 1-D transport to assess accuracy, maximum stable time step (MSTS), oscillations for discontinuous data, and parallel communication burden. The BA-MCV scheme is altered from the original MCV scheme to compute the updates of point wise cell boundary derivatives entirely locally. Then it is altered such that boundary moments are replaced with the interface upwind value. The scheme is stable at a maximum stable CFL (MSCFL) value of one no matter how high-order the scheme is, giving significantly larger time steps than Galerkin methods, for which the MSCFL decreases nearly quadratically with in- creasing order. The BA-MCV method is compared against a SE method at varying order, both using the ADER-DT time discretization. BA-MCV error for a sine wave was comparable to the same order of accuracy for a SE method. The resulting large time step, multi-moment, low communication scheme is of great interest for exascale architectures.

Norman, Matthew R.↗

Comparative Analysis of Radial and Random Microstructures of Mesophase Pitch Carbon Fibers

Carbon fibers (CF) with radial and random microstructures are produced. Here, these fibers are subjected to identical treatment before being mechanically tested and analyzed with Weibull analysis, with the results revealing a statistically significant difference in tensile strengths of 2.23 GPa for random CF and 1.69 GPa for radial CF. Raman mapping probed the crystalline structure perpendicular to the fiber axis and found a uniform structure, while wide‐angle X‐ray diffraction showed a significant difference of 7.5 Å in the crystallites’ basal lengths parallel to the fiber. Small‐angle X‐ray scattering is completed parallel to the fiber for the first time. A cross‐section Guinier plot of the 1D azimuthal integration is generated assuming symmetric scattering, and the parallel scatterers are found to have a similar length scale to the crystallite's length, validating the testing method. Finally, transmission electron microscopy is completed on the longitudinal cross‐section of each fiber. The radial carbon fiber is found to have a core–shell structure, as evidenced further by fast Fourier transform images. Through all studies, it is shown that the structure developed during mesophase pitch spinning altered the microstructure, thus impacting the mechanical properties, confirming a direct relationship between processing, structure, and properties.

Scherschel, Alexander [Univ. of Virginia, Charlott↗

A Porphyrin Spin Qubit and Its 2D Framework Nanosheets

Abstract Molecular spin qubits have been shown to reach sufficiently long quantum coherence times to envision their use as hardware in quantum processors. These will however require their implementation in hybrid solid‐state devices for which the controlled localization and homogeneous orientation of the molecular qubits will be necessary. An alternative to isolated molecules that can ensure these key aspects is 2D framework in which the qubit would act as node. In this work, it is demonstrated that the isolated metalloporphyrin [Cu(H 4 TCPP)] molecule is a potential spin qubit, and maintains similar quantum coherence as node in a 2D [{CuTCPP}Zn 2 (H 2 O) 2 ] metal–organic framework. Mono‐ and multilayer deposits of nanosheets of a similar 2D framework are then successfully formed following a modular method based on Langmuir–Schaefer conditions. The orientation of the {CuTCPP} qubit nodes in these nanosheets is homogeneous parallel to the substrate. These nanosheets are also formed with a control over the qubit concentration, i.e., by dilution with the unmetallated porphyrin. Eventually, 2D nanosheets are formed in situ directly on a substrate, through a simple protocol devised to reproduce the Langmuir–Schaefer conditions locally. Altogether these studies show that 2D spin qubit frameworks are ideal components to develop a hybrid quantum computing architecture.

Urtizberea, Ainhoa↗

Unveiling the Universe with emerging cosmological probes

The detection of the accelerated expansion of the Universe has been one of the major breakthroughs in modern cosmology. Several cosmological probes (Cosmic Microwave Background, Supernovae Type Ia, Baryon Acoustic Oscillations) have been studied in depth to better understand the nature of the mechanism driving this acceleration, and they are being currently pushed to their limits, obtaining remarkable constraints that allowed us to shape the standard cosmological model. In parallel to that, however, the percent precision achieved has recently revealed apparent tensions between measurements obtained from different methods. These are either indicating some unaccounted systematic effects, or are pointing toward new physics. Following the development of CMB, SNe, and BAO cosmology, it is critical to extend our selection of cosmological probes. Novel probes can be exploited to validate results, control or mitigate systematic effects, and, most importantly, to increase the accuracy and robustness of our results. This review is meant to provide a state-of-art benchmark of the latest advances in emerging “beyond-standard” cosmological probes. We present how several different methods can become a key resource for observational cosmology. In particular, we review cosmic chronometers, quasars, gamma-ray bursts, standard sirens, lensing time-delay with galaxies and clusters, cosmic voids, neutral hydrogen intensity mapping, surface brightness fluctuations, stellar ages of the oldest objects, secular redshift drift, and clustering of standard candles. The review describes the method, systematics, and results of each probe in a homogeneous way, giving the reader a clear picture of the available innovative methods that have been introduced in recent years and how to apply them. The review also discusses the potential synergies and complementarities between the various probes, exploring how they will contribute to the future of modern cosmology.

79 ASTRONOMY AND ASTROPHYSICS↗