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At least 1,333 records · Page 74

Microstructure of Al2O3 scales formed on NiCrAl alloys

The structure of transient scales formed on pure and Y or Zr-doped Ni-15Cr-13Al alloys oxidized for 0.1 hr at 1100 C was studied by the use of transmission electron microscopy. Crystallographically oriented scales were found on all three alloys, but especially for the Zr-doped NiCrAl. The oriented scales consisted of alpha-(Al,Cr)2O3, Ni(Al,Cr)2O4 and gamma-Al2O3. They were often found in intimate contact with each other such that the close-packed planes and directions of one oxide phase were aligned with those of another. The prominent structural features of the oriented scales were approximately equal to micrometer subgrains; voids, antiphase domain boundaries and aligned precipitates were also prevalent. Randomly oriented alpha-Al2O3 was also found and was the only oxide ever observed at the immediate oxide metal interface. These approximately 0.15 micrometer grains were populated by intragranular voids which decreased in size and number towards the oxide metal interface. A sequence of oxidation was proposed in which the composition of the growing scale changed from oriented oxides rich in Ni and Cr to oriented oxides rich in Al. At the same time the structure changed from cubic spinels to hexagonal corundums with apparent precipitates of one phase in the matrix of the other. Eventually randomly oriented pure alpha-Al2O3 formed as the stable oxide with an abrupt transition: there was no gradual loss of orientation, no gradual compositional change or no gradual decrease in precipitate density.

Smialek, J. L.↗

Automated Operations for Galileo Communications

Following the deployment failure of Galileo's high gain antenna, the downlink had to be redesigned so as to effectively use the low gain antenna. The downlink was redesigned to maximize the data return and increase the reliability which required the reconfiguration of the onboard software and the deep space network. The revised downlink features: data compression; antenna arraying; the recoding and reprocessing of telemetry; suppressed carrier tracking, and error-correction coding. The deep space network Galileo telemetry (DGT) subsystem was developed and deployed at three sites in Australia, Spain and the U.S. The DGT was designed as an automated system that continuously monitors and adjusts its parameters and environment in response to either pre-loaded sequences or changes in the internal status.

Statman, Joseph I.↗

Using Sequential Earth Images to Determine the Orientation of a Satellite at L1

This paper introduces a method for determining the three-axis attitude (orientation) of a spacecraft from a sequence of Earth images taken while in orbit about the stationary Lagrange point between the Earth and the sun (LI). Two axes of information can be obtained simply by monitoring the Earth's position within the field-of-view of the camera. The third axis is obtained by correlating sequential Earth images in such a way as to detect the flow of the features within the Earth's disk over time. When taken correctly, this measurement is perpendicular to the Earth's spin axis and, consequently, locates the Earth's spin axis within the images. This is equivalent to determining the orientation of the spacecraft about the instrument's boresight. Actual data from the Galileo spacecraft is used to test the algorithms outlined in this paper.

Houghton, Martin B.↗

PersGNN: Applying Topological Data Analysis and Geometric Deep Learning to Structure-Based Protein Function Prediction

Understanding protein structure-function relationships is a key challenge in computational biology, with applications across the biotechnology and pharmaceutical industries. While it is known that protein structure directly impacts protein function, many functional prediction tasks use only protein sequence. In this work, we isolate protein structure to make functional annotations for proteins in the Protein Data Bank in order to study the expressiveness of different structure-based prediction schemes. We present PersGNN - an end-to-end trainable deep learning model that combines graph representation learning with topological data analysis to capture a complex set of both local and global structural features. While variations of these techniques have been successfully applied to proteins before, we demonstrate that our hybridized approach, PersGNN, outperforms either method on its own as well as a baseline neural network that learns from the same information. PersGNN achieves a 9.3% boost in area under the precision recall curve (AUPR) compared to the best individual model, as well as high F1 scores across different gene ontology categories, indicating the transferability of this approach.

Swenson, Nicolas↗

Feature Engineering and Process Mining to Enable Hazard Detection in Health Information Technology

Motivation for this work originates from a recognized need for developing data-driven approaches through analysis of complex electronic health records. Specifically, we aim to enhance the reliability of health information technology (HIT) systems by detection of plausible HIT hazards in clinical order transactions. In the absence of well-defined event logs in corporate data warehouses, our proposed approach identifies relevant timestamped data fields that could indicate transactions in the clinical order life cycle generating raw event sequences. Subsequently, we adopt state transitions of the OASIS Human Task standard to map the raw event sequences and simplify the complex process that clinical radiology orders go through. We describe how the current approach provides the potential to investigate areas of improvement and potential hazards in HIT systems. The discussion concludes with a use case and opportunities for future applications.

Ozmen, Ozgur↗

Low-dissipation centred schemes for hyperbolic equations in conservative and non-conservative form

We propose a one-parameter family of low-dissipation centred numerical schemes for solving hyperbolic equations in conservative or non-conservative form, using finite volume or discontinuous Galerkin finite element methods. The new schemes spring out from the multi-dimensional FORCE method and are determined by a single parameter α ≥ 1. Given an increasing sequence of real numbers 1 ≤ α 1 < α 2 < . . . < α K , there corresponds a sequence of numerical schemes with stability restriction associated to a decreasing sequence of Courant numbers 1 > c 1 > c 2 > . . . > c K > 0 and a decreasing sequence of corresponding numerical viscosity functions d 1 > d 2 > . . . > d K . For a given Courant number c k ≤ 1 there is a real number α k > 0 and a corresponding stable scheme with minimal numerical viscosity d k . The proposed schemes suit very well the family of high-order discontinuous Galerkin finite element methods and the recently proposed class of ADER-TR schemes, whose orders of accuracy define decreasing sequences of Courant numbers, as the order of accuracy increases. The centred methods of this paper are stable in 2D and 3D in the frame of simultaneous updating formulae, unlike other centred methods, such as 1D FORCE, which are not. Furthermore, the schemes are highly accurate for slowly-moving waves, which is precisely the kind of waves that traditional centred methods smear disastrously. Additional features of the proposed schemes include ease of implementation and applicability to any hyperbolic system either in conservative or non-conservative form. Here, the proposed schemes are analysed and computationally assessed through a suite of test problems for a linear model system, for the Euler equations in one and two space dimensions, and for the Baer-Nunziato equations for compressible two-phase flow.

97 MATHEMATICS AND COMPUTING↗

Use of physics to improve solar forecast: Part III, impacts of different cloud types

Cloud-type impacts present a great challenge to solar forecasting due to diverse and complex cloud-radiation interactions. This third part of our paper sequence seeks to address this challenge by quantifying the forecast accuracies under eight cloud types: cumulus (Cu), stratified clouds (St), altocumulus (Ac), altostratus (As), cirrostratus/anvil (Cr), cirrus (Ci), congestus (Co), deep convective clouds (Dc) across four physics-informed persistence models reported in Part I. To generalize the cloud impacts, the eight cloud types are further grouped into three cloud categories based on their common features: weak convective clouds, stratiform clouds, and strong convective clouds. Here, the decade-long (2001 ~ 2014) collocated measurements of irradiances and cloud types at the U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) Program South Great Plain (SGP) Central Facility site are used for model evaluation. Results reveal a clear performance hierarchy for global horizontal irradiance (GHI) and direct normal irradiance (DNI): best for weak convective clouds and cirrus, intermediate for stratiform clouds, and worst for strong convective clouds. Performance for diffuse horizontal irradiance (DHI) is less influenced by cloud types. Cloud albedo dominates all three irradiances for Dc, while both cloud albedo and cloud fraction are influential for other cloud types. A 12 %~33 % improvement in accuracy at 6-hour lead time compared to the benchmark smart model confirms the effectiveness of incorporating physics into the models for various cloud types; further improvements are expected by directly integrating cloud type information into forecasting models by modifying the physical formulation of cloud-radiation interaction, and/or using more advanced machine learning models.

14 SOLAR ENERGY↗

Solvent-Producing Clostridia Revisited

The review provides an overview of the current status of the solvent-producing clostridia. The origin and development of industrial clostridial species, as well as the history of the industrial Acetone Butanol Ethanol fermentation process, is reexamined, and the recent resurgence of interest in the production of biobutanol is reviewed. Over 300 fully sequenced genomes for solvent-producing and closely related clostridial species are currently available in public databases. These include 270 genomes sourced from the David Jones culture collection. These genomes were allocated arbitrary DJ codes, and a conversion table to identify the species and strains has now been provided. The expanded genomic database facilitated new comparative genomic and phylogenetic analysis. A synopsis of the common features, molecular taxonomy, and phylogeny of solvent-producing clostridia and the application of comparative phylogenomics are evaluated. A survey and analysis of resident prophages in solvent-producing clostridia are discussed, and the discovery, occurrence, and role of novel R-type tailocins are reported. Prophage genomes with R-type tailocin-like features were detected in all 12 species investigated. The widespread occurrence of tailocins in Gram-negative species is well documented; this survey has indicated that they may also be widespread in clostridia.

59 BASIC BIOLOGICAL SCIENCES↗

Sublimate morphology on 74001 and 74002 orange and black glassy droplets

SEM-EDX analysis of the surface morphology of the 74001 and 74002 orange and black glassy droplets has revealed the presence of ubiquitous micromound coatings. Assuming that the diameter of an individual micromound is an indication of total coating thickness, then the thickness of this volatile and metal-rich layer ranges from less than 20 A to over 300 A in thickness. On rare droplets the micromound coating is partially covered by a sparse population of crystals and masses that are essentially NaCl in composition. Additionally, an irregular mass on the surface of one black droplet may contain free sulfur. Amoeboid masses of iron, some with incipient crystal faces, are also present on a few droplet surfaces. The above features, i.e., halite crystals, sulfur-rich masses and amoeboid iron, are rare; the more common occurrence of metals and volatiles is in the micromound coating. Based on our observations of several hundred spheres from both Apollo and Luna missions, the classic micromound coating is unique to the Apollo 15 green and Apollo 17 orange and black droplets. Although some investigators have proposed various impact sequences to produce these unique droplets, the volcanic fire fountain origin is favored.

Clanton, U. S.↗

Global albedo variations on Mars - Implications for active aeolian transport, deposition, and erosion

This paper describes the use of visible reflectance observations by the Viking IR thermal mapper for the construction of the time sequence of the Martian surface and atmospheric albedo throughout the Viking mission. The major variations in albedo were found to be associated with the two global dust storms of 1977. Visible albedo observations provided an excellent means for determining the onset and decay phases of the two storms, separating the surface and the atmospheric dust. Even at the height of the second storm some surface features were visible, particularly in the southern hemisphere. Significant differences were observed between the northern and the southern hemispheres in the dust load and the timing of the decay phase of the global storms. At the present time, there appears to be a net transport of dust from south to north, which is consistent with models of atmospheric circulation during the storm period.

Christensen, Philip R.↗

A description and evaluation of TIMER: A time-based terminal flow-control concept

A description of a time-based ATC concept called TIMER (Traffic Intelligence for the Management of Efficient Runway-scheduling) and the results of a fast time and real time computer evaluation are presented. The concept was designed to improve the efficiency of extended terminal area operations (en route approach, transition, and terminal flight to the runway). TIMER integrates en route metering, fuel efficient cruise and profile descents, terminal sequencing and spacing together with computer-generated controller aids, in order to fully use runway capacity and improve efficiency of delay absorption. The concept, by using simplified aircraft models, accommodates both 4-D and non 4-D equipped aircraft and is designed for integration into the manual, voice linked ATC system in an evolutionary manner and still be able to accommodate proposed system upgrade features such as data link and further ground automation. Fast time and real time computer simulation results identify and show the effects and interactions of such key variables as horizon of control, metering fix and final approach delivery time errors, aircraft separation requirements, delay discounting, wind, flight technical error, and knowledge of aircraft final approach speed. The current ATC system has a runway interarrival-error standard deviation of approx. 26 seconds. Simulation results indicate that, with computer aiding, the runway interarrival-error standard deviation for non 4-D equipped traffic can be reduced to the region of 8 to 12 seconds if expected final approach speed is known; however, the reduction is only in the region of 16 to 20 seconds if expected final approach speed is unknown. Another major finding is that en route metering fix delivery-error standard deviation should be kept to less than a number somewhere between 35 to 45 seconds to achieve full runway capacity. This requirement implies the need for either airborne automation or assistance to the controller since the current manual performance in today's en route metering environment is in the order of 1.5 minutes.

Credeur, Leonard↗

Spectroscopy of dwarf elliptical galaxies in the Fornax cluster

We present the results of spectroscopic observations of 10 nucleated dwarf elliptical galaxies (dE's) in the Fornax cluster. The blue spectra of Fornax dE galaxies indicate a wide range of metallicities at a given luminosity, similar to those of intermediate to metal-rich globular clusters. Metal abundances derived in this paper are well correlated with optical colors and agree with previous spectroscopic results. A discrepancy with metallicities inferred from infrared colors is evident; possible causes include an intermediate age population and dilution of spectral features by a blue light excess. Dwarf ellipticals exhibit a wide variation of hydrogen line strength which points to a complex star formation history. Prominent Balmer absorption lines are the signature of a young stellar population in the nuclei of some (but not all) dE's, while moderately strong Balmer lines in relatively metal-rich dE's are more consistent with an extended main sequence. In a few metal-poor dE galaxies, the hydrogen lines are consisent with, or perhaps weaker than, those found in Galactic globulars of similar metallicity. In the limited magnitude range of this sample, there is no apparent correlation of metallicity either with effective and central surface brightness, or with total and nuclear magnitudes. The velocity distribution of the Fornax dwarfs is flatter than that of brighter galaxies at the 75% confidence level, possibly indicating a difference in the kinematics of the two samples.

Held, Enrico V.↗

Detector Control and Data Acquisition for the Wide-Field Infrared Survey Telescope (WFIRST) with a Custom ASIC

The Wide-Field Infrared Survey Telescope (WFIRST) will have the largest near-IR focal plane ever flown by NASA, a total of 18 4K x 4K devices. The project has adopted a system-level approach to detector control and data acquisition where 1) control and processing intelligence is pushed into components closer to the detector to maximize signal integrity, 2) functions are performed at the highest allowable temperatures, and 3) the electronics are designed to ensure that the intrinsic detector noise is the limiting factor for system performance. For WFIRST, the detector arrays operate at 90 to 100 K, the detector control and data acquisition functions are performed by a custom ASIC at 150 to 180 K, and the main data processing electronics are at the ambient temperature of the spacecraft, notionally approx.300 K. The new ASIC is the main interface between the cryogenic detectors and the warm instrument electronics. Its single-chip design provides basic clocking for most types of hybrid detectors with CMOS ROICs. It includes a flexible but simple-to-program sequencer, with the option of microprocessor control for more elaborate readout schemes that may be data-dependent. All analog biases, digital clocks, and analog-to-digital conversion functions are incorporated and are connected to the nearby detectors with a short cable that can provide thermal isolation. The interface to the warm electronics is simple and robust through multiple LVDS channels. It also includes features that support parallel operation of multiple ASICs to control detectors that may have more capability or requirements than can be supported by a single chip.

data acquisition↗

SGR A* and its environment: low-mass star formation, the origin of X-ray gas and collimated outflow

We present high-resolution multiwavelength radio continuum images of the region within 150″ of Sgr A*, revealing a number of new extended features and stellar sources in this region. First, we detect a continuous 2″ east–west ridge of radio emission, linking Sgr A* and a cluster of stars associated with IRS 13 N and IRS 13E. The ridge suggests that an outflow of east–west blob-like structures is emerging from Sgr A*. In particular, we find arc-like radio structures within the ridge with morphologies suggestive of photoevaporative protoplanetary disks. We use infrared K{sub s} and L′ fluxes to show that the emission has similar characteristics to those of a protoplanetary disk irradiated by the intense radiation field at the Galactic center. This suggests that star formation has taken place within the S-cluster 2″ from Sgr A*. We suggest that the diffuse X-ray emission associated with Sgr A* is due to an expanding hot wind produced by the mass loss from B-type main sequence stars, and/or the disks of photoevaporation of low mass young stellar objects (YSOs) at a rate of ∼10{sup −6} M{sub ⊙} yr{sup −1}. The proposed model naturally reduces the inferred accretion rate and is an alternative to the inflow–outflow style models to explain the underluminous nature of Sgr A*. Second, on a scale of 5″ from Sgr A*, we detect new cometary radio and infrared sources at a position angle PA ∼ 50° which is similar to that of two other cometary sources X3 and X7, all of which face Sgr A*. In addition, we detect a striking tower of radio emission at a PA ∼ 50°–60° along the major axis of the Sgr A East supernova remnant shell on a scale of 150″ from Sgr A*. We suggest that the cometary sources and the tower feature are tracing interaction sites of a mildly relativistic jet from Sgr A* with the atmosphere of stars and the nonthermal Sgr A East shell at a PA ∼ 50°–60° with M-dot ∼1×10{sup −7} M{sub ⊙} yr{sup −1}, and opening angle 10°. Lastly, we suggest that the east–west ridge of radio emission traces an outflow that is potentially associated with past flaring activity from Sgr A*. The position angle of the outflow driven by flaring activity is close to −90°.

79 ASTRONOMY AND ASTROPHYSICS↗

Footprints of storms on the sea: A view from spaceborne synthetic aperture radar

Synthetic aperture radar (SAR) on board Seasat observed images of stormlike echoes on the sea in 1978. The core of these images is usually an echo-free hole which is attributed to the damping of the short (30-cm) radar detectable gravity waves by the intense rain in the storm core. Although 'the beating down of waves by rain' is consistent with observations by seafarers and with the first scientific explanation of the phenomenon by Reynolds (1875), neither theory nor experiment has provided definitive support. One experiment appears to provide the key; it shows that the kenetic energy of the rain produces sufficient turbulence in a thin fresh water layer to damp 30-cm waves in 10-20 s, thus producing the echo-free hole. A sequence of positive feedbacks then serves to damp the longer waves. The angular dependence of the sea surface echo cross sections seen by Seasat SAR outside the echo-free hole indicates winds diverging from the downdraft induced by the intense rain core. The wind-generated waves and associated echoes extend out to a sharply defined gust front. The sea surface footprint thus mimics the features of a storm microburst. The variations in surface radar cross section due to a combination of rain and wind effects impacts spaceborne measurements of surface winds by scatterometry and rainfall measurements by radar. Portions of this synthesis remain speculative but serve as hypotheses for further research.

Atlas, David↗

Evidence for a Binary Companion to the Enigmatic Compact Central Object 1E 1207.4-5209

Located in the supernova remnant G296.5+10.0, 1E 1207.4-5209 is a 0.424 s period X-ray pulsar that exhibits strong absorption lines in its energy spectrum. The physical origin of the spectral features in 1E 1207.4-5209 and more generally, the absence of similar features in other radio-quiet neutron stars remains a mystery. Another, possibly related, anomalous property of 1E 1207.4-5209 is its non-monotonic spin frequency evolution. Zavlin, Pavlov & Sanwal(2004) proposed that the irregular spin-down was caused by either (i) frequent, recurrent glitches, (ii) the presence of a fall-back disk or (iii) a binary companion. Here, we report on a sequence of seven XMM-Newton observations of 1E 1207.4-5209 performed during a 40 day window between 2005 June 22 and July 3 1. Due to unanticipated phase noise, we identified three statistically-acceptable phase-coherent timing solutions with frequency time derivatives of +0.9, -2.6, and +1.6 x 10-12 Hz/s (listed in descending order of significance). We concluded that the local frequency derivative during our XMM-Newton observing campaign differs from the long-term spin-down rate by more than an order of magnitude. This measurement strongly supports the binary interpretation for the observed spin irregularities in 1E 1207.4-5209. We identified a family of orbital solutions that are consistent with our phase-connected solution as well as all archival data. We will discuss possible orbital solutions, prospects for constraining binary parameters with future observations, and consequences for the nature of 1E 1207.4-5209.

Woods, P. M.↗

Differential catalytic promiscuity of the alkaline phosphatase superfamily bimetallo core reveals mechanistic features underlying enzyme evolution

Members of enzyme superfamilies specialize in different reactions but often exhibit catalytic promiscuity for one another's reactions, consistent with catalytic promiscuity as an important driver in the evolution of new enzymes. Wanting to understand how catalytic promiscuity and other factors may influence evolution across a superfamily, we turned to the well-studied alkaline phosphatase (AP) superfamily, comparing three of its members, two evolutionarily distinct phosphatases and a phosphodiesterase. Here, we mutated distinguishing active-site residues to generate enzymes that had a common Zn 2+ bimetallo core but little sequence similarity and different auxiliary domains. We then tested the catalytic capabilities of these pruned enzymes with a series of substrates. A substantial rate enhancement of ~1011-fold for both phosphate mono- and diester hydrolysis by each enzyme indicated that the Zn 2+ bimetallo core is an effective mono/di-esterase generalist and that the bimetallo cores were not evolutionarily tuned to prefer their cognate reactions. In contrast, our pruned enzymes were ineffective sulfatases, and this limited promiscuity may have provided a driving force for founding the distinct one-metal-ion branch that contains all known AP superfamily sulfatases. Finally, our pruned enzymes exhibited 10 7 –10 8 -fold phosphotriesterase rate enhancements, despite absence of such enzymes within the AP superfamily. We speculate that the superfamily active-site architecture involved in nucleophile positioning prevents accommodation of the additional triester substituent. Overall, we suggest that catalytic promiscuity, and the ease or difficulty of remodeling and building onto existing protein scaffolds, have greatly influenced the course of enzyme evolution. Uncovering principles and properties of enzyme function, promiscuity, and repurposing provides lessons for engineering new enzymes.

59 BASIC BIOLOGICAL SCIENCES↗

Unique Structural Features Relate to Evolutionary Adaptation of Cytochrome P450 in the Abyssal Zone

Cytochromes P450 (CYPs) form one of the largest enzyme superfamilies, with similar structural folds yet biological functions varying from synthesis of physiologically essential compounds to metabolism of myriad xenobiotics. Sterol 14α-demethylases (CYP51s) represent a very special P450 family, regarded as a possible evolutionary progenitor for all currently existing P450s. In metazoans CYP51 is critical for the biosynthesis of sterols including cholesterol. Here we determined the crystal structures of ligand-free CYP51s from the abyssal fish Coryphaenoides armatus and human-. Comparative sequence–structure–function analysis revealed specific structural elements that imply elevated conformational flexibility, uncovering a molecular basis for faster catalytic rates, lower substrate selectivity, and intrinsic resistance to inhibition. In addition, the C. armatus structure displayed a large-scale repositioning of structural segments that, in vivo, are immersed in the endoplasmic reticulum membrane and border the substrate entrance (the FG arm, >20 Å, and the β4 hairpin, >15 Å). The structural distinction of C. armatus CYP51, which is the first structurally characterized deep sea P450, suggests stronger involvement of the membrane environment in regulation of the enzyme function. We interpret this as a co-adaptation of the membrane protein structure with membrane lipid composition during evolutionary incursion to life in the deep sea.

Biochemistry & Molecular Biology↗