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At least 1,351 records · Page 75

Dark Energy Survey Year 3 results: redshift calibration of the weak lensing source galaxies

ABSTRACT Determining the distribution of redshifts of galaxies observed by wide-field photometric experiments like the Dark Energy Survey (DES) is an essential component to mapping the matter density field with gravitational lensing. In this work we describe the methods used to assign individual weak lensing source galaxies from the DES Year 3 Weak Lensing Source Catalogue to four tomographic bins and to estimate the redshift distributions in these bins. As the first application of these methods to data, we validate that the assumptions made apply to the DES Y3 weak lensing source galaxies and develop a full treatment of systematic uncertainties. Our method consists of combining information from three independent likelihood functions: self-organizing map p(z) (sompz), a method for constraining redshifts from galaxy photometry; clustering redshifts (WZ), constraints on redshifts from cross-correlations of galaxy density functions; and shear ratios (SRs), which provide constraints on redshifts from the ratios of the galaxy-shear correlation functions at small scales. Finally, we describe how these independent probes are combined to yield an ensemble of redshift distributions encapsulating our full uncertainty. We calibrate redshifts with combined effective uncertainties of σ〈z〉 ∼ 0.01 on the mean redshift in each tomographic bin.

79 ASTRONOMY AND ASTROPHYSICS↗

A thioacidolysis method tailored for higher‐throughput quantitative analysis of lignin monomers

Abstract Thioacidolysis is a method used to measure the relative content of lignin monomers bound by β‐O‐4 linkages. Current thioacidolysis methods are low‐throughput as they require tedious steps for reaction product concentration prior to analysis using standard GC methods. A quantitative thioacidolysis method that is accessible with general laboratory equipment and uses a non‐chlorinated organic solvent and is tailored for higher‐throughput analysis is reported. The method utilizes lignin arylglycerol monomer standards for calibration, requires 1–2 mg of biomass per assay and has been quantified using fast‐GC techniques including a Low Thermal Mass Modular Accelerated Column Heater (LTM MACH). Cumbersome steps, including standard purification, sample concentrating and drying have been eliminated to help aid in consecutive day‐to‐day analyses needed to sustain a high sample throughput for large screening experiments without the loss of quantitation accuracy. The method reported in this manuscript has been quantitatively validated against a commonly used thioacidolysis method and across two different research sites with three common biomass varieties to represent hardwoods, softwoods, and grasses.

09 BIOMASS FUELS↗

A Novel Method for Phasor Measurement Unit Sampling Time Error Compensation

This paper focuses on a novel method for successive approximation register analog to digital converter control in synchronized phasor measurement units (PMUs). To compensate for the sampling time error caused by the division remainder between the desirable sampling rate and the oscillator frequency, a variable sampling interval control method is presented by interlacing two integers under a proposed criterion. The frequency of the onboard oscillator is monitored in real-time using the pulse per second (PPS) timing reference from global positioning system. The sampling control is adaptively adjusted each second according to the latest estimated oscillator frequency. The “saw tooth” in phasor angle error and DC offset and spikes in frequency error can be effectively eliminated by applying the proposed method. The simulation and experiment results validate the effectiveness and accuracy of the proposed method, which is believed to be able to greatly improve the performance of PPS-disciplined synchronous sampling methods in PMUs.

24 POWER TRANSMISSION AND DISTRIBUTION↗

The future of Earth system prediction: Advances in model-data fusion

Predictions of the Earth system, such as weather forecasts and climate projections, require models informed by observations at many levels. Some methods for integrating models and observations are very systematic and comprehensive (e.g., data assimilation), and some are single purpose and customized (e.g., for model validation). We review current methods and best practices for integrating models and observations. We highlight how future developments can enable advanced heterogeneous observation networks and models to improve predictions of the Earth system (including atmosphere, land surface, oceans, cryosphere, and chemistry) across scales from weather to climate. As the community pushes to develop the next generation of models and data systems, there is a need to take a more holistic, integrated, and coordinated approach to models, observations, and their uncertainties to maximize the benefit for Earth system prediction and impacts on society.

54 ENVIRONMENTAL SCIENCES↗

Air-to-Fuel Ratio Calculation Methods for Oxygenated Fuels in Two-Stroke Engines

In 1990, Roy Douglas developed an analytical method to calculate the global air-to-fuel ratio of a two-stroke engine from exhaust gas emissions. While this method has considerable application to two-stroke engines, it does not permit the calculation of air-to-fuel ratios for oxygenated fuels. This study proposed modifications to the Roy Douglas method such that it can be applied to oxygenated fuels. The ISO #16183 standard, the modified Spindt method, and the Brettschneider method were used to evaluate the modifications to the Roy Douglas method. In addition, a trapped air-to-fuel ratio, appropriate for two-stroke engines, was also modified to incorporate oxygenated fuels. To validate the modified calculation method, tests were performed using a two-stroke carbureted and two-stroke direct injected marine outboard engine over a five-mode marine test cycle running indolene and low level blends of ethanol and iso-butanol fuels. Results indicate that the modified air-fuel ratio method closely relates to the ISO #16183 standard. The modified Spindt method over-estimated the global air-to-fuel ratio. While the Brettschneider is considered an advancement over the Spindt method, it still provided an over-estimate of the air-to-fuel ratio. Applying a trapped air-to-fuel ratio calculation to the modified Roy Douglas method provided a calculation for trapped air-to-fuel ratio for two-stroke engine operation, which correlated with engine-out CO emissions. The trapped air-to-fuel ratio calculation also provided improvements in air-to-fuel ratio predictions, especially during idle conditions.

Sevik, James Michael↗

Dynamic Phasor Modeling of Multi-Converter Systems

Generalized form of Dynamic Phasor (DP)-based modeling of multi-converter systems containing high order harmonics has not been proposed in the literature yet due to the complexity and large number of variables that should be included in the model. In this work a generalized form of a system-level model comprising high number of single-phase converters is presented. The proposed method can be applied to any number of single-phase voltage source converters (VSIs). Test cases of this modeling method containing 5 to 100 parallel connected single-phase voltage source inverters are modeled and simulation times are recorded. The results of the proposed method are compared and validated with conventional average models as well as detailed switching models. A systematic approach for comparing the accuracy and timestep between dynamic phasor modeling method and detailed switching model is illustrated. Advantage of DP models over conventional average models for stability assessment are also discussed at the end of the paper.

Xue, Yaosuo↗

On the novel 3-D neutron transport kinetic tRAPID algorithm and its validation

The Real-time Analysis for Particle-transport and In-situ Detection (RAPID) Code System, based on the Multi-stage Response-function Transport (MRT) methodology, allows for real-time simulation of nuclear systems based on 3-D continuous-energy particle transport. RAPID's steady-state (criticality) neutron transport algorithm is based on the Fission Matrix (FM) method, and has been extensively verified and validated against computational benchmarks and experiments. This paper introduces the novel 3-D time-dependent transport algorithm that has been implemented into the code, tRAPID, and its validation using the JSI TRIGA Mark-II reactor. tRAPID accurately and efficiently calculates neutron kinetics parameters (such as β{sub eff}, l{sub eff} , Λ, α{sub Rossi}) and 3-D time-dependent neutron fission source distribution and neutron importances for both prompt and delayed neutrons. tRAPID is used to simulate a rod insertion experiment performed at the JSI TRIGA Mark-II reactor, during which signals from four fission chambers at four different locations in the core were collected. The results demonstrate how tRAPID is capable of calculating detailed and accurate results with only a minimal use computational resources and time.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Evaluation of advanced automatic PET segmentation methods using nonspherical thin-wall inserts

Purpose: The use of positron emission tomography (PET) within radiotherapy treatment planning requires the availability of reliable and accurate segmentation tools. PET automatic segmentation (PET-AS) methods have been recommended for the delineation of tumors, but there is still a lack of thorough validation and cross-comparison of such methods using clinically relevant data. In particular, studies validating PET segmentation tools mainly use phantoms with thick plastic walls inserts of simple spherical geometry and have not specifically investigated the effect of the target object geometry on the delineation accuracy. Our work therefore aimed at generating clinically realistic data using nonspherical thin-wall plastic inserts, for the evaluation and comparison of a set of eight promising PET-AS approaches. Methods: Sixteen nonspherical inserts were manufactured with a plastic wall of 0.18 mm and scanned within a custom plastic phantom. These included ellipsoids and toroids derived with different volumes, as well as tubes, pear- and drop-shaped inserts with different aspect ratios. A set of six spheres of volumes ranging from 0.5 to 102 ml was used for a baseline study. A selection of eight PET-AS methods, written in house, was applied to the images obtained. The methods represented promising segmentation approaches such as adaptive iterative thresholding, region-growing, clustering and gradient-based schemes. The delineation accuracy was measured in terms of overlap with the computed tomography reference contour, using the dice similarity coefficient (DSC), and error in dimensions. Results: The delineation accuracy was lower for nonspherical inserts than for spheres of the same volume in 88% cases. Slice-by-slice gradient-based methods, showed particularly lower DSC for tori (DSC < 0.5), caused by a failure to recover the object geometry. The region-growing method reached high levels of accuracy for most inserts (DSC > 0.76 except for tori) but showed the largest errors in the recovery of pears and drops dimensions (higher than 10% and 30% of the true length, respectively). Large errors were visible for one of the gradient-based contouring methods when delineating drop-shaped inserts. Low DSC due to systematic underestimation of the volumes was observed for our fuzzy clustering method when using nonspherical inserts. The adaptive iterative thresholding method produced the highest DSC score on our nonspherical dataset (DSC > 0.83, except for tori) and showed robustness to the insert geometry. Conclusions: This study investigated the accuracy of eight PET-AS methods for the delineation of objects with a range of nonspherical geometries. The authors’ results confirmed the robustness of some segmentation approaches, but also showed the weaknesses of some of the other methods implemented, which were not observed with spherical inserts. This work therefore highlights the importance of using a variety of thin-wall inserts with complex geometries for the validation of PET-AS methods and provided useful information for further development of the methods tested.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Measurement of neutron and gamma-ray noise in large subcritical condition for criticality safety - 14485

Various experimental methods have been proposed for subcriticality measurement and neutron noise analysis method is one of important experimental techniques for this purpose. The variance to mean value method, called Feynman-alpha method, is one of well-known noise analysis methods. In this method, variation of neutron count rate distribution from the Poisson distribution caused by fission chain reactions, which is called Y-value, is measured, however, it is difficult to measure the Y-value in large subcritical state such as nuclear fuel facility, because number of emitted neutrons by fission chain reaction is small, which causes large statistical error. We developed new experimental technique based on Feynman-alpha method combined with pulsed neutron source, called Delayed Neutron Noise Analysis (DNNA) method, to monitor the change of subcriticality. In this new method, neutron and gamma-ray counts measured only appeared in the delayed neutron region after injection of pulsed neutron are analyzed, and the prompt neutron region is completely ignored. The advantage of DNNA compared with conventional method is that spatial dependency of detector positions on measured results can be greatly decreased, which result in increase of accuracy of measured subcriticality. The validity of the DNNA method was experimentally investigated in the Kyoto University Critical Assembly (KUCA) at Kyoto University Research Reactor Institute. In the experiments, pulsed neutrons by D-T reactions are injected into the core and we used {sup 3}He detectors to measure neutron noise signals and BGO scintillation detectors to measure gamma-ray noise signals, and all data in the delayed neutron region were analyzed based on Feynman-alpha method. From the experimental results, it was found that the Y-values are clearly larger than zero in the case of existence of fuel assemblies and this method can be applied to detection of hidden special nuclear materials for example in a cargo container. (authors)

42 ENGINEERING↗

Scalable Programming Workflows for Validation of Quantum Computers

Hybrid quantum-classical workflows have become standard methods for executing variational algorithms and other quantum simulation techniques, which are key applications for noisy intermediate scale quantum (NISQ) computers. Validating these simulations is an important task which helps gauge the progress of quantum computer development, and classical simulation can serve as a tool to this end. Both exact and more scalable approximate methods with quantifiable error bounds can be used in validation tasks where the applicable metrics include the distance from a calculable ground truth, the quality of an error model fit to data, etc. Here we present a library extension that includes methods for validation of quantum simulations based on scalable hybrid workflows executable on high performance computers. We provide examples that use approximate methods based on tensor networks and stabilizer simulators to bound the error of quantum simulations on NISQ hardware.

Nguyen, Thien↗

New Internet search volume-based weighting method for integrating various environmental impacts

Weighting is one of the steps in life cycle impact assessment that integrates various characterized environmental impacts as a single index. Weighting factors should be based on the society's preferences. However, most previous studies consider only the opinion of some people. Thus, this research proposes a new weighting method that determines the weighting factors of environmental impact categories by considering public opinion on environmental impacts using the Internet search volumes for relevant terms. To validate the new weighting method, the weighting factors for six environmental impacts calculated by the new weighting method were compared with the existing weighting factors. The resulting Pearson's correlation coefficient between the new and existing weighting factors was from 0.8743 to 0.9889. It turned out that the new weighting method presents reasonable weighting factors. It also requires less time and lower cost compared to existing methods and likewise meets the main requirements of weighting methods such as simplicity, transparency, and reproducibility. The new weighting method is expected to be a good alternative for determining the weighting factor. - Highlight: • A new weighting method using Internet search volume is proposed in this research. • The new weighting method reflects the public opinion using Internet search volume. • The correlation coefficient between new and existing weighting factors is over 0.87. • The new weighting method can present the reasonable weighting factors. • The proposed method can be a good alternative for determining the weighting factors.

54 ENVIRONMENTAL SCIENCES↗

Investigation on Vibration Response of Aluminum Foam Beams Using Speckle Interferometry

This paper firstly presents a brief review on the representations of speckle fringe pattern in vibration measurement using time-averaged electronic speckle pattern interference (ESPI) method. Based on laser phase noise, a new representation of speckle fringe intensity generated by real-time subtraction ESPI method for vibrating measurement is then proposed. In the experimental performance, the real-time subtraction ESPI method is employed to inspect the vibrating response of a closed-cell aluminum foam cantilever beam. In contract with the results of the finite elemental method simulation, the vibration mode shapes obtained by the ESPI method are well agreed with numerical prediction. The optical vibration analysis is also carried out to determine the effective Young’s modulus of aluminum foam, and the results verify the validation of the ESPI method for investigation on mechanical properties of metal foam materials.

36 MATERIALS SCIENCE↗

Development of XFCT imaging strategy for monitoring the spatial distribution of platinum-based chemodrugs: Instrumentation and phantom validation

Purpose: Developing an imaging method to directly monitor the spatial distribution of platinum-based (Pt) drugs at the tumor region is of critical importance for early assessment of treatment efficacy and personalized treatment. In this study, the authors investigated the feasibility of imaging platinum (Pt)-based drug distribution using x-ray fluorescence (XRF, a.k.a. characteristic x ray) CT (XFCT). Methods: A 5-mm-diameter pencil beam produced by a polychromatic x-ray source equipped with a tungsten anode was used to stimulate emission of XRF photons from Pt drug embedded within a water phantom. The phantom was translated and rotated relative to the stationary pencil beam in a first-generation CT geometry. The x-ray energy spectrum was collected for 18 s at each position using a cadmium telluride detector. The spectra were then used for the K-shell XRF peak isolation and sinogram generation for Pt. The distribution and concentration of Pt were reconstructed with an iterative maximum likelihood expectation maximization algorithm. The capability of XFCT to multiplexed imaging of Pt, gadolinium (Gd), and iodine (I) within a water phantom was also investigated. Results: Measured XRF spectrum showed a sharp peak characteristic of Pt with a narrow full-width at half-maximum (FWHM) (FWHM{sub K{alpha}1}= 1.138 keV, FWHM{sub K{alpha}2}= 1.052 keV). The distribution of Pt drug in the water phantom was clearly identifiable on the reconstructed XRF images. Our results showed a linear relationship between the XRF intensity of Pt and its concentrations (R{sup 2}= 0.995), suggesting that XFCT is capable of quantitative imaging. A transmission CT image was also obtained to show the potential of the approach for providing attenuation correction and morphological information. Finally, the distribution of Pt, Gd, and I in the water phantom was clearly identifiable in the reconstructed images from XFCT multiplexed imaging. Conclusions: XFCT is a promising modality for monitoring the spatial distribution of Pt drugs. The technique may be useful in tailoring tumor treatment regimen in the future.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Coarse-Grained Simulations for the Characterization and Optimization of Hybrid Protein–DNA Nanostructures

We present here the combination of experimental and computational modeling tools for the design and characterization of protein–DNA hybrid nanostructures. Our work incorporates several features in the design of these nanostructures: (1) modeling of the protein–DNA linker identity and length; (2) optimizing the design of protein–DNA cages to account for mechanical stresses; (3) probing the incorporation efficiency of protein–DNA conjugates into DNA nanostructures. The modeling tools were experimentally validated using structural characterization methods like cryo-TEM and AFM. Our method can be used for fitting low-resolution electron density maps when structural insights cannot be deciphered from experiments, as well as enable in-silico validation of nanostructured systems before their experimental realization. Finally, these tools will facilitate the design of complex hybrid protein–DNA nanostructures that seamlessly integrate the two different biomolecules.

59 BASIC BIOLOGICAL SCIENCES↗

Digital image correlation and infrared thermography data for seven unique geometries of 304L stainless steel

Material Testing 2.0 (MT2.0) is a paradigm that advocates for the use of rich, full-field data, such as from digital image correlation and infrared thermography, for material identification. By employing heterogeneous, multi-axial data in conjunction with sophisticated inverse calibration techniques such as finite element model updating and the virtual fields method, MT2.0 aims to reduce the number of specimens needed for material identification and to increase confidence in the calibration results. To support continued development, improvement, and validation of such inverse methods—specifically for rate-dependent, temperature-dependent, and anisotropic metal plasticity models—we provide here a thorough experimental data set for 304L stainless steel sheet metal. The data set includes full-field displacement, strain, and temperature data for seven unique specimen geometries tested at different strain rates and in different material orientations. Commensurate extensometer strain data from tensile dog bones is provided as well for comparison. We believe this complete data set will be a valuable contribution to the experimental and computational mechanics communities, supporting continued advances in material identification methods.

36 MATERIALS SCIENCE↗

Acidities of MgO surface sites: implications for the formation mechanism of Mg(OH) 2

The hydroxylation of periclase (MgO) to brucite (Mg(OH) 2 ) is thought to be an important intermediate step when using MgO to capture CO 2 from the atmosphere. However, the mechanism of hydroxylation of MgO to form Mg(OH) 2 is poorly understood. In this work, we used atomic-scale density functional tight binding simulations coupled with the metadynamics rare event method to analyze the surface chemistry of MgO and the acid dissociation equilibrium constants (pK a ) of its surface sites. The method and parameters were validated by calculating the pK a for hydroxylation of the first shell water bound to aqueous Mg 2+ ion. The pK a value derived using a probabilistic method was 12.3, which is in fair agreement with the accepted value of 11.4, with the difference between them equal to a ∼5 kJ mol −1 error in the calculations. We then extended these pK a calculations to probe the hydroxylation reactions of the surface sites of the MgO(100)–water interface, arriving at pK a s of 5.4 to deprotonate terminal water molecules bound to the surface magnesium sites (η-OH 2 or 〉MgOH 2 ), and 13.9 to deprotonate hydroxylated bridging oxygen sites (μ 5 -oxo or 〉O). Hydroxide (OH − ) adsorption on the surface was also probed and found to be less thermodynamically favorable than deprotonation of the terminal water molecule. The plausibility of the computed pK a s was verified using an activity-based speciation model and compared to pH measurements of water equilibrated with MgO nanoparticles and single crystals. The model predicted a solution pH of 7.1 when surface sites buffered and the pH of 12.0 when MgO dissolution dominated. These are close to the experimental initial solution pHs of 7–7.5 and the long term pHs of ∼10.5. The similarity suggests that the calculated pK a values from the DFTB+/metadynamics simulations are plausible and that these methods can be a useful tool to probe reaction mechanisms involving covalent bonds.

Adapa, Sai Krishna Reddy [Oak Ridge National Labor↗

Adaptive local learning in sampling based motion planning for protein folding

Background: Simulating protein folding motions is an important problem in computational biology. Motion planning algorithms, such as Probabilistic Roadmap Methods, have been successful in modeling the folding landscape. Probabilistic Roadmap Methods and variants contain several phases (i.e., sampling, connection, and path extraction). Most of the time is spent in the connection phase and selecting which variant to employ is a difficult task. Global machine learning has been applied to the connection phase but is inefficient in situations with varying topology, such as those typical of folding landscapes. Results: We develop a local learning algorithm that exploits the past performance of methods within the neighborhood of the current connection attempts as a basis for learning. It is sensitive not only to different types of landscapes but also to differing regions in the landscape itself, removing the need to explicitly partition the landscape. We perform experiments on 23 proteins of varying secondary structure makeup with 52–114 residues. We compare the success rate when using our methods and other methods. We demonstrate a clear need for learning (i.e., only learning methods were able to validate against all available experimental data) and show that local learning is superior to global learning producing, in many cases, significantly higher quality results than the other methods. Conclusions: We present an algorithm that uses local learning to select appropriate connection methods in the context of roadmap construction for protein folding. Our method removes the burden of deciding which method to use, leverages the strengths of the individual input methods, and it is extendable to include other future connection methods.

Mathematical & Computational Biology↗