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At least 1,369 records · Page 76

A molecular conveyor belt-associated protein controls the rotational direction of the bacterial type 9 secretion system

ABSTRACT Many bacteria utilize the type 9 secretion system (T9SS) for gliding motility, surface colonization, and pathogenesis. This dual-function motor supports both gliding motility and protein secretion, where rotation of the T9SS plays a central role. Fueled by the energy of the stored proton motive force and transmitted through the torque of membrane-anchored stator units, the rotary T9SS propels an adhesin-coated conveyor belt along the bacterial outer membrane like a molecular snowmobile, thereby enabling gliding motion. However, the mechanisms controlling the rotational direction and gliding motility of T9SS remain elusive. Shedding light on this mechanism, we find that in the gliding bacteriumFlavobacterium johnsoniae, deletion of the C-terminus of the conveyor belt-associated protein GldJ controls and, in fact, reverses the rotational direction of T9SS from counterclockwise (CCW) to clockwise (CW). This suggests that the interface between the conveyor belt-associated protein GldJ and the T9SS ring protein GldK plays an important role in controlling the directionality of T9SS, potentially by modulating its interaction with the stator complex GldLM, which drives motor rotation. Combined with MD simulation of the T9SS stator units GldLM, we suggest a “tri-component gearset” model where GldJ controls the rotational direction of its driver, the T9SS, thus providing adaptive sensory feedback to influence the motility of the gliding bacterium. IMPORTANCE The type 9 secretion system (T9SS) is fundamental to bacterial gliding motility, pathogenesis, and surface colonization. Our findings reveal that the C-terminal region of the conveyor belt-associated protein GldJ functions as a molecular switch which is capable of reversing the rotational direction of T9SS. Through the coordinated actions of the T9SS stator units (akin to a driving motor), the GldK ring (the gear that converts rotational energy into linear movement), and GldJ, this machinery forms a smart conveyor belt system reminiscent of flexible or cognitive mechanical conveyors. Such advanced conveyors can alter their direction to adapt to shifting demands. Here, we show that the bacterial T9SS similarly adjusts its rotational bias based on feedback from the conveyor belt-associated protein GldJ. This dual-role feedback mechanism underscores an evolved, controllable biological snowmobile, offering new avenues for studying how bacteria fine-tune motility in dynamic environments.

Microbiology↗

A boundary integral method for numerical computation of radar cross section of 3D targets using hybrid BEM/FEM with edge elements

This contribution presents the boundary integral formulation for numerical computation of time-harmonic radar cross section for 3D targets. Method relies on hybrid edge element BEM/FEM to compute near field edge element coefficients that are associated with near electric and magnetic fields at the boundary of the computational domain. Special boundary integral formulation is presented that computes radar cross section directly from these edge element coefficients. Consequently, there is no need for near-to-far field transformation (NTFFT) which is common step in RCS computations. By the end of the paper it is demonstrated that the formulation yields accurate results for canonical models such as spheres, cubes, cones and pyramids. Method has demonstrated accuracy even in the case of dielectrically coated PEC sphere at interior resonance frequency which is common problem for computational electromagnetic codes. - Graphical abstract: - Highlights: • Hybrid edge element BEM/FEM is used to find edge element coefficients. • New formulation for RCS computation directly from edge element coefficients is presented. • Formulation is tested on canonical cases and on coated dielectric sphere at interior resonance frequency.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Supersymmetry searches in GUT models with non-universal scalar masses

We study SO(10), SU(5) and flipped SU(5) GUT models with non-universal soft supersymmetry-breaking scalar masses, exploring how they are constrained by LHC supersymmetry searches and cold dark matter experiments, and how they can be probed and distinguished in future experiments. We find characteristic differences between the various GUT scenarios, particularly in the coannihilation region, which is very sensitive to changes of parameters. For example, the flipped SU(5) GUT predicts the possibility of ∼t{sub 1}−χ coannihilation, which is absent in the regions of the SO(10) and SU(5) GUT parameter spaces that we study. We use the relic density predictions in different models to determine upper bounds for the neutralino masses, and we find large differences between different GUT models in the sparticle spectra for the same LSP mass, leading to direct connections of distinctive possible experimental measurements with the structure of the GUT group. We find that future LHC searches for generic missing E{sub T}, charginos and stops will be able to constrain the different GUT models in complementary ways, as will the Xenon 1 ton and Darwin dark matter scattering experiments and future FERMI or CTA γ-ray searches.

79 ASTRONOMY AND ASTROPHYSICS↗

Techno-Economic Analysis of BEVs with Fast Charging Infrastructure: Preprint

Battery electric vehicles (BEVs) offer the potential to reduce both oil imports and greenhouse gas emissions, but high upfront costs, battery-limited vehicle range, and concern over high battery replacement costs may discourage many potential purchasers. One proposed solution is to employ a subscription model under which a service provider assumes ownership of the battery while providing access to vast fast charging infrastructure. Thus, high upfront and subsequent battery replacement costs are replaced by a predictable monthly fee, and battery-limited range is replaced by a larger infrastructure-limited range. Assessing the costs and benefits of such a proposal are complicated by many factors, including customer drive patterns, the amount of required infrastructure, and battery life. Herein the National Renewable Energy Laboratory applies its Battery Ownership Model to address these challenges and compare the economics and utility of a BEV fast charging service plan to a traditional direct ownership option. In single vehicle households, where such a service is most valuable, we find that operating a BEV under a fast charge service plan can be more cost-effective than direct ownership of a BEV, but it is rarely more cost-effective than direct ownership of a conventional vehicle.

25 ENERGY STORAGE↗

Structures and transport dynamics of a Campylobacter jejuni multidrug efflux pump

Resistance-nodulation-cell division efflux pumps are integral membrane proteins that catalyze the export of substrates across cell membranes. Within the hydrophobe-amphiphile efflux subfamily, these resistance-nodulation-cell division proteins largely form trimeric efflux pumps. The drug efflux process has been proposed to entail a synchronized motion between subunits of the trimer to advance the transport cycle, leading to the extrusion of drug molecules. Here we use X-ray crystallography and single-molecule fluorescence resonance energy transfer imaging to elucidate the structures and functional dynamics of the Campylobacter jejuni CmeB multidrug efflux pump. We find that the CmeB trimer displays a very unique conformation. A direct observation of transport dynamics in individual CmeB trimers embedded in membrane vesicles indicates that each CmeB subunit undergoes conformational transitions uncoordinated and independent of each other. On the basis of our findings and analyses, we propose a model for transport mechanism where CmeB protomers function independently within the trimer.

59 BASIC BIOLOGICAL SCIENCES↗

Dynamic programming and direct interaction for the optimum design of skeletal towers

A computer technique is proposed for automatically designing tower structures. Dynamic programming was used to find the optimum geometric configuration of the structural members, while the member sizes were proportioned by direct iteration. Tower structures are particularly suited to this method of automatic design since the rapidity of the analysis and design depends primarily upon substructuring. Substructuring of towers was comparatively simple because interaction between adjacent substructures is simulated with reasonable accuracy. Typical examples are presented to illustrate the method.

Howell, G. C.↗

Predictions of a population of cataclysmic variables in globular clusters

We have studied the number of cataclysmic variables (CVs) that should be active in globular clusters during the present epoch as a result of binary formation via two-body tidal capture. We predict the orbital period and luminosity distributions of CVs in globular clusters. The results arebased on Monte Carlo simulations combined with evolution calculations appropriate to each system formed during the lifetime of two specific globular clusters, omega Cen and 47 Tuc. From our study of these two clusters, which represent the range of core densities and states of mass segregation that are likely to be interesting, we extrapolate our results to the Galactic globlular cluster system. Although there is at present little direct observational evidence of CVs in globular clusters, we find that there should be a large number of active systems. We predict that there should be more than approximately 100 CVs in both 47 Tuc and omega Cen and several thousand in the Galactic globular cluster system. These numbers are based on two-body processes alone and represent a lower bound on the number of systems that may have been formed as a result of stellar interaction within globular clusters. The relation between these calculations and the paucity of optically detected CVs in globular clusters is discussed. Should future observations fail to find convincing evidence of a substantial population of cluster CVs, then the two-body tidal capture scenario is likely to be seriously constrained. Of the CVs we espect in 47 Tuc and omega Cen, approximately 45 and 20, respectively, should have accretion luminosities above 10(exp 33) ergs/s. If one utilizes a relation for converting accretion luminosity to hard X-ray luminosity that is based on observations of Galactic plane CVs, even these sources will not exhibit X-ray luminosities above 10(exp 33) ergs/s. While we cannot account directly for the most luminous subset of the low-luminosity globular cluster X-ray sources without assuming an evolutionary pattern that is different from that of the majority of CVs in the disk, we are able to account for all of the observed lower luminosity subset of these sources, many of which have been recently discovered through ROSAT observations. In order for our predicted integrated cluster X-ray luminosities to be consistent with observational upper limits, the relation between accretion and X-ray luminosities should be something like that inferred from the Galactic plane population of CVs. Our calculations predict a large number of systems with L(sub acc) is less than 10(exp 32) ergs/s. Although our calculations imply that globular clusters should have an enhancement of CVs relative to the number thought to be present in the Galactic disk, this enhancement is at most roughly an order of magnitude, not comparable to the factor of approximately 100 for low-mass X-ray binaries (LMXBs).

Di Stefano, R.↗

On the impact of large angle CMB polarization data on cosmological parameters

We study the impact of the large-angle CMB polarization datasets publicly released by the WMAP and Planck satellites on the estimation of cosmological parameters of the ΛCDM model. To complement large-angle polarization, we consider the high resolution (or "high-ℓ") CMB datasets from either WMAP or Planck as well as CMB lensing as traced by Planck's measured four point correlation function. In the case of WMAP, we compute the large-angle polarization likelihood starting over from low resolution frequency maps and their covariance matrices, and perform our own foreground mitigation technique, which includes as a possible alternative Planck 353 GHz data to trace polarized dust. We find that the latter choice induces a downward shift in the optical depth τ, roughly of order 2σ, robust to the choice of the complementary high resolution dataset. When the Planck 353 GHz is consistently used to minimize polarized dust emission, WMAP and Planck 70 GHz large-angle polarization data are in remarkable agreement: by combining them we find τ = 0.066 +0.012-0.013, again very stable against the particular choice for high-ℓ data. We find that the amplitude of primordial fluctuations As, notoriously degenerate with τ, is the parameter second most affected by the assumptions on polarized dust removal, but the other parameters are also affected, typically between 0.5 and 1σ. In particular, cleaning dust with Planck's 353 GHz data imposes a 1σ downward shift in the value of the Hubble constant H0, significantly contributing to the tension reported between CMB based and direct measurements of the present expansion rate. On the other hand, we find that the appearance of the so-called low ℓ anomaly, a well-known tension between the high- and low-resolution CMB anisotropy amplitude, is not significantly affected by the details of large-angle polarization, or by the particular high-ℓ dataset employed.

79 ASTRONOMY AND ASTROPHYSICS↗

Extracting Material Property Measurements from Scientific Literature with Limited Annotations

Extracting material property data from scientific text is pivotal for advancing data-driven research in chemistry and materials science; however, the extensive annotation effort required to produce training data for named entity recognition (NER) models for this task often makes it a barrier to extracting specialized data sets. Here, in this work, we present a comparative study of the conventional, supervised NER methodology to alternative few-shot learning architectures and large language model (LLM)-based approaches that mitigate the need to label large training data sets. We find that the best-performing LLM (GPT-4o) not only excels in directly extracting relevant material properties based on limited examples but also enhances supervised learning through data augmentation. We supplement our findings with error and data quality assessments to provide a nuanced understanding of factors that impact property measurement extraction.

36 MATERIALS SCIENCE↗

Inclusive cross sections for pairs of identified light charged hadrons and for single protons in e + e - at s = 10.58 GeV

We report the first double differential cross sections of two charged pions and kaons (e + e - →hhX) in electron-positron annihilation as a function of the fractional energies of the two hadrons for any charge and hadron combination. The dependence of these di-hadron cross sections on the topology (same, opposite-hemisphere or anywhere) is also studied with the help of the event shape variable thrust and its axis. The ratios of these di-hadron cross sections for different charges and hadron combinations directly shed light on the contributing fragmentation functions. For example, we find that the ratio of same-sign pion pairs over opposite-sign pion pairs drops toward higher fractional energies where disfavored fragmentation is expected to be suppressed. These di-hadron results are obtained from a 655fb -1 data sample collected near the Υ(4S) resonance with the Belle detector at the KEKB asymmetric-energy e + e - collider. Extending the previously published single-pion and single-kaon cross sections, single-proton (e + e - →pX) cross sections are extracted from a 159fb -1 data sub-sample.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

The north galactic pole rift and the local hot bubble

The North Galactic Pole Rift (NGPR) is one of the few distinct neutral hydrogen clouds at high Galactic latitudes that have well-defined distances. It is located at the edge of the Local Cavity (LC) and provides an important test case for understanding the Local Hot Bubble (LHB), the presumed location for the hot diffuse plasma responsible for much of the observed 1/4 keV emission originating in the solar neighborhood. Using data from the ROSAT All-Sky Survey and the Planck reddening map, we find the path length within the LC (LHB plus Complex of Local Interstellar Clouds) to be 98 ± 27 pc, in excellent agreement with the distance to the NGPR of 98 ± 6 pc. In addition, we examine another 14 directions that are distributed over the sky where the LC wall is apparently optically thick at 1/4 keV. We find that the data in these directions are also consistent with the LHB model and a uniform emissivity plasma filling most of the LC.

79 ASTRONOMY AND ASTROPHYSICS↗

Ultrasound versus computed tomography for the detection of ureteral calculi in the pediatric population: a clinical effectiveness study

Objective: To determine the diagnostic performance of ultrasound for diagnosing ureteral calculi in children using a clinical effectiveness approach. Methods: Billing records and imaging reports were used to identify children (≤ 18 years old) evaluated for suspected urolithiasis using ultrasound between March 2012 and March 2017. Patients without unenhanced CT within 24 h (reference standard) were excluded. Imaging (ultrasound and CT) reports were reviewed for presence, number, size, and location of calculi. Diagnostic performance of ultrasound (versus CT) was calculated on an individual ureter basis both by direct calculus visualization as well as direct visualization combined with suspected presence of ureteral stone based on indirect ultrasound findings. Results: 41 ureteral calculi were present in 38 of 69 (55.1%) patients. Mean patient age was 14.7 ± 3.6 years, and 35 of 69 (51%) patients were boys. Based on direct calculus visualization, ultrasound had a sensitivity of 12.8% (95% CI 5.6–26.7%), specificity of 100% (95% CI 96.3–100%), positive predictive value (PPV) of 100% (95% CI 56.6–100%), and negative predictive value (NPV) of 74.4% (95% CI 66.4–81.1%). When ultrasound examinations reported as suspicious for ureteral calculi based on indirect findings also were considered positive, ultrasound had a sensitivity of 41.0% (95% CI 27.1–56.6%), specificity of 95.0% (95% CI 88.7–97.8%), PPV of 76.2% (95% CI 54.9–89.4%), and NPV of 80.3% (95% CI 72.2–86.5%). Conclusions: In clinical practice, ultrasound has low sensitivity for directly visualizing ureteral calculi subsequently identified by CT, although sensitivity improves when considering suspicious examinations as positive.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Water reuse for sustainable microalgae cultivation: current knowledge and future directions

Microalgae hold great promise as environmentally sustainable sources of food, animal feed, and fuel. However, large amounts of water are used during microalgae cultivation and this negatively impacts economic viability and environmental sustainability. Reusing cultivation water can reduce the direct impacts of water usage and also reduce nutrient requirements and algal wastewater treatment. However, studies have shown that algae growth in reused water can be compromised, unaffected, or sometimes enhanced compared to controls. This review examines recent studies on water reuse to qualitatively understand these varied effects. Growth inhibitors and stimulators in reused water and their underlying mechanisms are discussed, as well as recent pre-treatment technologies and factors affecting the quality of reused water, such as microalgae taxa, culture conditions, and harvesting methods, are considered. A scheme is proposed for water reuse and harvesting methods based on the desired algal end products. Finally, taking these findings together, here we provide recommendations for further research directions as well as new insights into designing and integrating a cultivation strategy with a harvesting platform to reuse water for more efficient microalgae cultivation.

42 ENGINEERING↗

Stress analysis using direct-S wavelets produced by a vertical vibrator

We have determined how to extract the azimuth of maximum horizontal stress (SHmax) in deep rocks by doing a simple 360° mathematical rotation of a downgoing direct-S wavelet generated at the baseplate of a surface-based vertical vibrator. We worked with direct-S wavelets that travel through stressed rocks to a deep horizontal vertical seismic profile (VSP) geophone. We find that the azimuth where a polarity reversal occurs in mathematical rotations of this downgoing direct-S wavelet defines the azimuth of the SHmax in the overlying rocks. We tested this direct-S wavelet rotation method for determining the SHmax azimuth at a site in the Illinois Basin using legacy VSP data acquired in 2013. SHmax azimuths indicated by this simple wavelet-rotation method were determined when vertical vibrators were stationed at zero offset, at far offset, and at different azimuths around a VSP receiver well. These VSP-based SHmax azimuths agreed with the azimuth of the SHmax found by traditional minifrac tests in the VSP receiver well. This simple VSP data analysis procedure for detecting the azimuth of maximum horizontal stress has never, to our knowledge, been reported or discussed in the geophysical literature. This technical finding should be of interest to the worldwide geophysical community, especially to people who need to monitor how stress fields shift when fluids are injected into, or extracted from, deep porous reservoirs.

Geochemistry & Geophysics↗

Ancient and modern slopes in the Tharsis region of Mars

Ancient slope directions in the Martian Tharsis region are compared with new earth-based radar observations in an effort to detect tectonic deformations. Data were taken from 20-150 pixel/m Viking Orbiter images and from 200 m orthophotomosaics prepared by the U.S. Geological Survey. The positions of 475 lava flows were determined, covering widths between 5-10 km on higher slopes and 15-35 km on lower slopes. Most of the flows originated from four volcanos, although none issued from Olympus Mons, which makes up the central portion of the Plateau. Further radar-derived topography was made of, Arsia Mons and Syria Planum in latitudes 14-21 deg S to find differences in regional gradients and the lava flow directions, to determine if deformations occurred after the lava flows. A lithospheric stability is concluded, indicating no tectonic upheavals since the days of Tharsis Plateau volcanic activity.

Mouginis-Mark, P. J.↗

MONTE CARLO SIMULATIONS OF GLOBULAR CLUSTER EVOLUTION. VI. THE INFLUENCE OF AN INTERMEDIATE-MASS BLACK HOLE

We present results from a series of Monte Carlo (MC) simulations investigating the imprint of a central intermediate-mass black hole (IMBH) on the structure of a globular cluster. We investigate the three-dimensional and projected density profiles, and stellar disruption rates for idealized as well as realistic cluster models, taking into account a stellar mass spectrum and stellar evolution, and allowing for a larger, more realistic number of stars than was previously possible with direct N-body methods. We compare our results to other N-body and Fokker-Planck simulations published previously. We find, in general, very good agreement for the overall cluster structure and dynamical evolution between direct N-body simulations and our MC simulations. Significant differences exist in the number of stars that are tidally disrupted by the IMBH, and this is most likely caused by the wandering motion of the IMBH, not included in the MC scheme. These differences, however, are negligible for the final IMBH masses in realistic cluster models, as the disruption rates are generally much lower than for single-mass clusters. As a direct comparison to observations we construct a detailed model for the cluster NGC 5694, which is known to possess a central surface brightness cusp consistent with the presence of an IMBH. We find that not only the inner slope but also the outer part of the surface brightness profile agree well with observations. However, there is only a slight preference for models harboring an IMBH compared to models without.

79 ASTRONOMY AND ASTROPHYSICS↗

ALIGNMENT BETWEEN FLATTENED PROTOSTELLAR INFALL ENVELOPES AND AMBIENT MAGNETIC FIELDS

We present 350 {mu}m polarization observations of four low-mass cores containing Class 0 protostars: L483, L1157, L1448-IRS2, and Serp-FIR1. This is the second paper in a larger survey aimed at testing magnetically regulated models for core-collapse. One key prediction of these models is that the mean magnetic field in a core should be aligned with the symmetry axis (minor axis) of the flattened young stellar object inner envelope (aka pseudodisk). Furthermore, the field should exhibit a pinched or hourglass-shaped morphology as gravity drags the field inward toward the central protostar. We combine our results for the four cores with results for three similar cores that were published in the first paper from our survey. An analysis of the 350 {mu}m polarization data for the seven cores yields evidence of a positive correlation between mean field direction and pseudodisk symmetry axis. Our rough estimate for the probability of obtaining by pure chance a correlation as strong as the one we found is about 5%. In addition, we combine together data for multiple cores to create a source-averaged magnetic field map having improved signal-to-noise ratio, and this map shows good agreement between mean field direction and pseudodisk axis (they are within 15 Degree-Sign ). We also see hints of a magnetic pinch in the source-averaged map. We conclude that core-scale magnetic fields appear to be strong enough to guide gas infall, as predicted by the magnetically regulated models. Finally, we find evidence of a positive correlation between core magnetic field direction and bipolar outflow axis.

79 ASTRONOMY AND ASTROPHYSICS↗

Magnetohydrodynamic wave propagation in one-dimensional nonhomogeneous, self-gravitating clouds

We study the propagation of magnetohydrodynamic (MHD) waves through nonhomogeneous, selfgravitating, magnetic media representative of molecular cloud environments and focus on the issues of cloud support and line profiles. Since the general treatment of this topic is burdened by a complex mathematical formalism, we consider simplifying geometries which yield analytical solutions in the linear wave limit. In particular, we study both magnetoacoustic and Alfven wave propagation along the density gradient in a one-imensional slab. Of specific relevance to molecular clouds, we find that the back reaction of the Alfven waves can provide a pressure along the direction of the magnetic field lines; this pressure can help support a density enhancement against gravitational collapse. Furthermore, we find that the velocity amplitudes of these waves increase as the density decreases, in rough agreement with observational estimates of line width versus density relations.

Fatuzzo, Marco↗