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All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Identification of Distorted Gamma-Ray Signature Patterns Using Digital Filtering and Auto-Associative Memory Implemented with a Hopfield Neural Network

The detection and identification of radioactive sources in search applications involve analyzing passive gamma-ray emissions from high-level radioactive materials. This process uses a mobile detector-spectrometer in a complex field test environment. Recently, the use of artificial intelligence for gamma-ray spectrum analysis has shown promising results. However, challenges persist in identifying isotopic signatures from spectral measurements that may be distorted due to source shielding, random variations in natural radioactive background, or insufficient measurement time to obtain clear spectral lines. Here, this paper presents a novel intelligent signature recognition method that combines digital filtering techniques with an artificial Hopfield Neural Network (HNN). The HNN leverages auto-associative memory to store training sample patterns and match them with incoming gamma spectra from distorted sources. It restores the testing sources’ measurements by finding the closest matching signature patterns in the spectral library. Before HNN recognition, the measured spectrum undergoes preprocessing with a digital image filter to reduce fluctuations. Performance of the proposed method is evaluated using a set of gamma-ray spectra measured with a sodium iodide detector. The data collected include measurements from six pure samples: 241 Am, 60 Co, 137 Cs, 192 Ir, 239 Pu, and 235 U, which are used for training and validation (i.e. six cases). Additionally, the data set contains 24 distorted synthesized sources with various fluctuating backgrounds. Test results demonstrate the potential of the proposed method to accurately recognize the correct isotope with high precision, achieving an accuracy rate exceeding 85%. Furthermore, the proposed method exhibits superior performance compared to the conventional multiple regression fitting and simple feedforward neural network methods.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2016

SU-G-TeP1-04: Deriving Spot Shape Criteria for Proton Pencil Beam Scanning

Purpose: The shape of a single beam in proton PBS influences the resulting dose distribution. Spot profiles are modelled as two-dimensional Gaussian (single/ double) distributions in treatment planning systems (TPS). Impact of slight deviations from an ideal Gaussian on resulting dose distributions is typically assumed to be small due to alleviation by multiple Coulomb scattering (MCS) in tissue and superposition of many spots. Quantitative limits are however not clear per se. Methods: A set of 1250 deliberately deformed profiles with sigma=4 mm for a Gaussian fit were constructed. Profiles and fit were normalized to the same area, resembling output calibration in the TPS. Depth-dependent MCS was considered. The deviation between deformed and ideal profiles was characterized by root-mean-squared deviation (RMSD), skewness/ kurtosis (SK) and full-width at different percentage of maximum (FWxM). The profiles were convolved with different fluence patterns (regular/ random) resulting in hypothetical dose distributions. The resulting deviations were analyzed by applying a gamma-test. Results were compared to measured spot profiles. Results: A clear correlation between pass-rate and profile metrics could be determined. The largest impact occurred for a regular fluence-pattern with increasing distance between single spots, followed by a random distribution of spot weights. The results are strongly dependent on gamma-analysis dose and distance levels. Pass-rates of >95% at 2%/2 mm and 40 mm depth (=70 MeV) could only be achieved for RMSD<10%, deviation in FWxM at 20% and root of quadratic sum of SK <0.8. As expected the results improve for larger depths. The trends were well resembled for measured spot profiles. Conclusion: All measured profiles from ProBeam sites passed the criteria. Given the fact, that beam-line tuning can result shape distortions, the derived criteria represent a useful QA tool for commissioning and design of future beam-line optics.

07 ISOTOPE AND RADIATION SOURCES↗
DOE OSTI2023

Riverbed and Near-Surface Water Quality Data, Hanford Reach, Columbia River, February 2021 - April 2022

This dataset contains longitudinal profiles of natural groundwater tracers (temperature, electrical conductivity (EC), and Radon-222 (Rn)) collected to identify locations of hydrologic exchange flows along a 75-km reach of the Columbia River near Richland, Washington.A jetboat was used to tow a 30 foot long, weighted tether that had one set of temperature and EC sensors just below the water surface and one set of temperature and EC sensors on the end (just above the river bed). The dataset contains profiles of temperature/EC data (resolution: 1 second) collected along the left and right banks during three different sampling events. During the final sampling event, we revisited some "deep holes" where the river was more than 30 feet deep with a weighted tether that was 75 feet long. The dataset has been processed to remove data collected when the sensors were not in the water, or when the water was too deep to keep the tether on the riverbed. We collected grab samples of water for analysis of dissolved Rn in places where the temperature/EC was different from the background river water. The Rn data was joined to the temperature/EC profiles based on the sample times.This dataset is comprised of one main data folder containing (1) file-level metadata; (2) data dictionary; (3) installation methods; (4) February 2021 data; (5) July 2021 data; (6) April 2022 data; and (7) April 2022 deep hole data. All files are .csv format and can be opened with a spreadsheet program (such as Microsoft Excel or OpenOffice).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2019

Measurement of the (e,e') cross section for12C, 48Ti, 27Al and 40Ar

Many experiments have found that neutrinos have three different flavors, and they can transform from each other. Each flavor is a mixture of three nonzero mass states. In neutrino oscillation experiments, the uncertainty of the extracted oscillation parameters is dependent on the neutrino-nucleus cross section. In recent years various experiments provided precise neutrino and anti-neutrino cross section measurements and they have shown the inability of current Monte Carlo simulations to reproduce the data. A more accurate nuclear structure model of the target employed in neutrino detector is urgently needed to improve the precision of long baseline neutrino experiments. Electron scattering has been one of the most powerful methods of obtaining information about cross sections in the past. In the upcoming deep underground neutrino experiment (DUNE), Liquid Argon Time Projection Chambers (LArTPCs) will be used as the detector technology and argon will be used as the nuclear target. There are very few data available on argon and there is not an accurate nuclear model that describes them accurately, at ~5% level. We have performed an electron-argon scattering experiment at Jefferson Lab (E12-14-012) to provide accurate data that will help build a reliable nuclear model for describing neutrino-argon scattering. The JLab E12-14-012 experiment has successfully taken data in Hall A at the Thomas Jefferson National Accelerator Facility between February and March of 2017. We collected data for the inclusive (e,e') and exclusive (e,e'p) processes for a variety of targets (argon, titanium, aluminum, carbon) at a wide range of kinematic settings. This thesis will present the results of the inclusive double differential cross sections for carbon, titanium, aluminum and argon at beam energy E = 2:222 GeV and scattering angle theta = 15:541 deg with total uncertainties smaller than 5%. The kinematic settings covered a broad range of energy transfers, including deep inelastic scattering (DIS), delta production, and quasielastic scattering.

Dai, Hongxia↗
DOE OSTI2015

French Atomic and alternative energies commission decommissioning policy and strategies: What is at stake lessons learned and feedback experience - 15013

Since its creation in 1945, the French Atomic Energy and Alternative Energies Commission has carried out research programmes on civil use of nuclear, and its application. CEA has set up and run various types of installations from research (accelerators, pond reactors, fast reactors, laboratories) to industry (power reactor, processing facilities). There are currently more than several tens of facilities which are presently closed down pending dismantling or in the process of being dismantled by CEA, the governmental body for research and development in nuclear and renewable energies. When operating, all these installations have generated radioactive waste. When they are shutdown, either as a result of the programmes for which they were set up, or due to equipment wearing out or being obsolete, these installations must be cleaned up, dismantled and decommissioned, taking into account their nuclear nature and requirements related to safety and environment. During the decommissioning process, the implementer has to deal with safety and site remediation issues. Dealing with these installations is a long-term programme which must be carefully planned and financed in order to optimise its management. The paper will describe the CEA's decommissioning policy, strategies adopted, and draw up lessons learned and feedback experience, showing that: - Safety is guaranteed, - Dismantling is a technically controllable operation, but R and D actions are to be developed for specific problems as characterization or operation in hostile environment. Moreover all the methods and techniques improve as a result of feedback experience, - The amount of material and waste produced by the dismantling are manageable. The very low, low and intermediate level waste can be stored on existing shallow land burial centres, some new repositories have to be created for specific waste (graphite, radium,...) and for high and intermediate level long live waste, which are stored in interim storage , - The dismantling must be optimized, especially by appliance of a good strategy based on rational industrial choices. - Communication and transparency with stakeholders is essential for global process acceptance, - The lessons learned and how feedback experience could benefit for future decommissioning projects. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2024

Development of Segregated Thermal-Hydraulics Solvers in MOOSE

The simulation of fluid flows is an essential part of the design and analysis of nuclear systems. Algorithms able to simulate flows at different fidelity levels are available in the Multiphysics Object-Oriented Simulation Environment (MOOSE) and MOOSE-based applications such as Pronghorn \cite{novak2018pronghorn}, Pronghorn-Subchannel, RELAP-7, and SAM. Currently, significant effort is being invested in the development of coarse-mesh Computational Fluid Dynamics (CFD) capabilities within MOOSE and Pronghorn for the simulation of Generation IV nuclear reactors. Traditionally, the solution algorithms in MOOSE have relied on Newton or quasi-Newton methods (such as the preconditioned Jacobian-free Newton-Krylov method) where residuals and Jacobians (or approximations thereof) are constructed. Both Newton and quasi-Newton methods require the solution of a linear system at each nonlinear Newton iteration with the Jacobian as the system matrix. The Jacobian contains blocks originating from all variables in the problem (i.e., for thermal-hydraulics at least pressure, velocities, and temperature). Due to the formulation of the problem in a general multiphysics setting on unstructured mesh, creating a good preconditioner for the linear system can be challenging, thus many fluid applications have utilized direct solver-based methods such as LU factorization. However, with increasing system size and complexity in multi-dimensional problems, the direct solution of linear systems becomes computationally expensive both in execution time and and memory. For this reason, recent effort has focused on adapting segregated solution algorithms for CFD problems in MOOSE. These algorithms use fixed-point iteration between segregated systems whose assembly and preconditioning are easier those of the monolithic system. Initial results show that the segregated solution algorithm outperforms the monolithic approach in terms of memory usage and for large 3D problems in terms of CPU time as well.

42 ENGINEERING↗
DOE OSTI2024

Development of Segregated Thermal-Hydraulics Solvers in MOOSE

The simulation of fluid flows is an essential part of the design and analysis of nuclear systems. Algorithms able to simulate flows at different fidelity levels are available in the Multiphysics Object-Oriented Simulation Environment (MOOSE) and MOOSE-based applications such as Pronghorn \cite{novak2018pronghorn}, Pronghorn-Subchannel, RELAP-7, and SAM. Currently, significant effort is being invested in the development of coarse-mesh Computational Fluid Dynamics (CFD) capabilities within MOOSE and Pronghorn for the simulation of Generation IV nuclear reactors. Traditionally, the solution algorithms in MOOSE have relied on Newton or quasi-Newton methods (such as the preconditioned Jacobian-free Newton-Krylov method) where residuals and Jacobians (or approximations thereof) are constructed. Both Newton and quasi-Newton methods require the solution of a linear system at each nonlinear Newton iteration with the Jacobian as the system matrix. The Jacobian contains blocks originating from all variables in the problem (i.e., for thermal-hydraulics at least pressure, velocities, and temperature). Due to the formulation of the problem in a general multiphysics setting on unstructured mesh, creating a good preconditioner for the linear system can be challenging, thus many fluid applications have utilized direct solver-based methods such as LU factorization. However, with increasing system size and complexity in multi-dimensional problems, the direct solution of linear systems becomes computationally expensive both in execution time and and memory. For this reason, recent effort has focused on adapting segregated solution algorithms for CFD problems in MOOSE. These algorithms use fixed-point iteration between segregated systems whose assembly and preconditioning are easier those of the monolithic system. Initial results show that the segregated solution algorithm outperforms the monolithic approach in terms of memory usage and for large 3D problems in terms of CPU time as well.

42 ENGINEERING↗
DOE OSTI2016

Complex multireference configuration interaction calculations for the K-vacancy Auger states of N{sup q+} (q = 2-5) ions

K-vacancy Auger states of N{sup q+} (q = 2-5) ions are studied by using the complex multireference single- and double-excitation configuration interaction (CMRD-CI) method. The calculated resonance parameters are in good agreement with the available experimental and theoretical data. It shows that the resonance positions and widths converge quickly with the increase of the atomic basis sets in the CMRD-CI calculations; the standard atomic basis set can be employed to describe the atomic K-vacancy Auger states well. The strong correlations between the valence and core electrons play important roles in accurately determining those resonance parameters, Rydberg electrons contribute negligibly in the calculations. Note that it is the first time that the complex scaling method has been successfully applied for the B-like nitrogen. CMRD-CI is readily extended to treat the resonance states of molecules in the near future.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2017

Crystallization and preliminary X-ray diffraction study of recombinant adenine phosphoribosyltransferase from the thermophilic bacterium Thermus thermophilus strain HB27

Adenine phosphoribosyltransferase (APRT) belongs to the type I phosphoribosyltransferase family and catalyzes the formation of adenosine monophosphate via transfer of the 5-phosphoribosyl group from phosphoribosyl pyrophosphate to the nitrogen atom N9 of the adenine base. Proteins of this family are involved in a salvage pathway of nucleotide synthesis, thus providing purine base utilization and maintaining the optimal level of purine bases in the body. Adenine phosphoribosyltransferase from the extremely thermophilic Thermus thermophilus strain HB27 was produced using a highly efficient E. coli producer strain and was then purified by affinity and gel-filtration chromatography. This enzyme was successfully employed as a catalyst for the cascade biosynthesis of biologically important nucleotides. The screening of crystallization conditions for recombinant APRT from T. thermophilus HB27 was performed in order to determine the enzyme structure by X-ray diffraction. The crystallization conditions, which were found by the vapor-diffusion technique, were then optimized to apply the counter-diffusion technique. The crystals of the enzyme were grown by the capillary counter-diffusion method. The crystals belong to sp. gr. P12{sub 1}1 and have the following unitcell parameters: a = 69.86 Å, b = 82.16 Å, c = 91.39 Å, α = γ = 90°, β = 102.58°. The X-ray diffraction data set suitable for the determination of the APRT structure at 2.6 Å resolution was collected from the crystals at the SPring-8 synchrotron facility (Japan).

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2022

Performing Bayesian Analyses With AZURE2 Using BRICK: An Application to the 7 Be System

Phenomenological R-matrix has been a standard framework for the evaluation of resolved resonance cross section data in nuclear physics for many years. It is a powerful method for comparing different types of experimental nuclear data and combining the results of many different experimental measurements in order to gain a better estimation of the true underlying cross sections. Yet a practical challenge has always been the estimation of the uncertainty on both the cross sections at the energies of interest and the fit parameters, which can take the form of standard level parameters. Frequentist (χ 2 -based) estimation has been the norm. In this work, a Markov Chain Monte Carlo sampler, emcee, has been implemented for the R-matrix code AZURE2, creating the Bayesian R-matrix Inference Code Kit (BRICK). Bayesian uncertainty estimation has then been carried out for a simultaneous R-matrix fit of the 3 He (α,γ) 7 Be and 3 He (α,α) 3 He reactions in order to gain further insight into the fitting of capture and scattering data. Both data sets constrain the values of the bound state α-particle asymptotic normalization coefficients in 7 Be. The analysis highlights the need for low-energy scattering data with well-documented uncertainty information and shows how misleading results can be obtained in its absence.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2019

Optimal Allocation of Water Resources Using a Two-Stage Stochastic Programming Method with Interval and Fuzzy Parameters

Efficient water allocation is one of the most prominent issues in water resources management. In this research, a two-stage interval-parameter stochastic fuzzy programming with type 2 membership functions was used to allocate water resources optimally to different users under uncertainty. This method can handle uncertainties expressed as probability distributions, discrete intervals, and fuzzy sets. The model considers treated wastewater as an allocable water resource in a scenario, in addition to water that is extracted from wellheads, springs, and qanats. Moreover, the loss rate of water during distribution, surplus water in the reservoir in the previous and the next period, and treated wastewater parameters have been incorporated into the model. This model was applied to a case study of water resources allocation within a multi-user and multi-reservoir context in the Zarand region of Kerman, Iran. The results indicate that reasonable solutions have been generated, in the form of interval and fuzzy information under different scenarios that could help managers provide optimal water resources allocation plans. The results also demonstrate that establishing a wastewater treatment station increases the system net benefits, surplus water in wellheads for the next period, and system reliability (level of satisfying the fuzzy goal and constraints), and decreases encountering water shortages.

58 GEOSCIENCES↗
DOE OSTI2017

An improved method for determining carrier densities via drive level capacitance profiling

In this paper, we demonstrate that an analytic relationship between coefficients in the Taylor expansion of the junction capacitance can be exploited to yield more precise determinations of carrier densities in drive level capacitance profiling (DLCP). Improvements are demonstrated on data generated according to the DLCP theory and in measurements performed on a CuIn x Ga 1–x Se 2 device. We argue that the improved DLCP method is especially important for non-uniform devices, which are more susceptible to noise in the capacitance data used in DLCP because they require that the amplitude of the drive level be restricted. Importantly, the analysis does not require the collection of any data other than what is typically collected during a DLCP measurement while employing fewer independent parameters than the model that is typically used in DLCP. Finally and thus, we expect that it will be readily adoptable by those who perform DLCP measurements.

30 DIRECT ENERGY CONVERSION↗
DOE OSTI2015

SU-E-J-36: Comparison of CBCT Image Quality for Manufacturer Default Imaging Modes

Purpose CBCT is being increasingly used in patient setup for radiotherapy. Often the manufacturer default scan modes are used for performing these CBCT scans with the assumption that they are the best options. To quantitatively assess the image quality of these scan modes, all of the scan modes were tested as well as options with the reconstruction algorithm. Methods A CatPhan 504 phantom was scanned on a TrueBeam Linear Accelerator using the manufacturer scan modes (FSRT Head, Head, Image Gently, Pelvis, Pelvis Obese, Spotlight, & Thorax). The Head mode scan was then reconstructed multiple times with all filter options (Smooth, Standard, Sharp, & Ultra Sharp) and all Ring Suppression options (Disabled, Weak, Medium, & Strong). An open source ImageJ tool was created for analyzing the CatPhan 504 images. Results The MTF curve was primarily dictated by the voxel size and the filter used in the reconstruction algorithm. The filters also impact the image noise. The CNR was worst for the Image Gently mode, followed by FSRT Head and Head. The sharper the filter, the worse the CNR. HU varied significantly between scan modes. Pelvis Obese had lower than expected HU values than most while the Image Gently mode had higher than expected HU values. If a therapist tried to use preset window and level settings, they would not show the desired tissue for some scan modes. Conclusion Knowing the image quality of the set scan modes, will enable users to better optimize their setup CBCT. Evaluation of the scan mode image quality could improve setup efficiency and lead to better treatment outcomes.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2017

The Backscattering Phase Function for a Sphere with a Two-Scale Relief of Rough Surface

The backscattering of light from spherical surfaces characterized by one and two-scale roughness reliefs has been investigated. The analysis is performed using the three-dimensional Monte-Carlo program POKS-RG (geometrical-optics approximation), which makes it possible to take into account the roughness of objects under study by introducing local geometries of different levels. The geometric module of the program is aimed at describing objects by equations of second-order surfaces. One-scale roughness is set as an ensemble of geometric figures (convex or concave halves of ellipsoids or cones). The two-scale roughness is modeled by convex halves of ellipsoids, with surface containing ellipsoidal pores. It is shown that a spherical surface with one-scale convex inhomogeneities has a flatter backscattering phase function than a surface with concave inhomogeneities (pores). For a sphere with two-scale roughness, the dependence of the backscattering intensity is found to be determined mostly by the lower-level inhomogeneities. The influence of roughness on the dependence of the backscattering from different spatial regions of spherical surface is analyzed.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2021

Ecosystems and Networks Integrated with Genes and Molecular Assemblies (ENIGMA): Component 5: Imaging Protein Conformations, Shapes & Assemblies in Solution & Administration project (Final Scientific/Technical Report, Subcontract No. 6974584)

We set ambitious goals to examine microorganism communities and measure both their chemical input and output as a read out of specific biochemical activity. These scientific goals are driving the development of sophisticated algorithms to analyze large amounts of experimental measurements made using high throughput technologies to explain and predict how the environment influences biological function at multiple scales and how the microbial systems in tum modify the environment. By examining how bacteria communities rely on symbiotic metabolic relationships for survival and reproductive success, and how these relationships consequently affect their biochemical capabilities. This was accomplished using state-of-the-art mass spectrometry-based methods, and metabolic fingerprinting approaches with a high degree of chemical specificity and sensitivity. During this period the original effort transitioned and was consolidated into what is now ENIGMA, the efforts on technology development expanded to include more untargeted metabolomics and its application to organisms on a systems level.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Advanced Graphite Creep Uncertainty Analysis

Radiation damage estimation is an important component of the post irradiation analysis of the Advanced Graphite Creep (AGC) experiment. It depends primarily on the fast fluence, which is determined using well established methods of spectral adjustment. These are based on best estimates from models such as Monte Carlo N-Particle (MCNP), input cross-sections, and measured activities from flux wires in the experiment. Each of these parameters can propagate uncertainties which will affect the uncertainty in the calculated dose levels for AGC, or any experiment irradiated within a reactor. While the methods of propagating uncertainty are well-established, the final uncertainty estimates they provide are only as good as the estimates of uncertainty in the inputs on which they are based. The purpose of this work is to outline some deficiencies in the ways these input uncertainties are presently estimated, and to outline a methodology by which they can be improved. The fast fluence and radiation damage received by graphite specimens irradiated in the Advanced Graphite Creep (AGC) experiments is presently estimated using spectral adjustment methods that are based on both flux wire activity measurements, and MCNP model predictions. This work describes an ongoing effort to quantify and propagate uncertainties in inputs to the spectral adjustment process, and thereby quantify the resultant error in radiation damage (dpa) estimates. The effort is multi-faceted, and we consider the impacts of both the set of flux wires selected, and the counting process. An expanded set of flux wires is identified that provides a more comprehensive data set on the fast spectrum. To address the counting process itself, a series of round-robin measurements in several reactor metrology laboratories across the Department of Energy (DOE) complex and nuclear industry are being undertaken to refine the American Society for Testing and Materials (ASTM) standards for flux wire measurements. To address the contribution of uncertainty in the MCNP model predictions, an uncertainty quantification (UQ) tool has been developed that statistically samples the model input parameters, runs a series of cases, and assimilates the results to provide an overall uncertainty. The impact of the MCNP UQ tool results is demonstrated by re-analyzing previous AGC flux wire and irradiation data. While the expanded flux wire set obviously cannot be added to these experiments retroactively, plans for future graphite irradiations are outlined.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2018

A pedagogical intrinsic approach to relative entropies as potential functions of quantum metrics: The q–z family

The so-called q-z-Rényi Relative Entropies provide a huge two parameter family of relative entropies which include almost all well-known examples of quantum relative entropies for suitable values of the parameters. In this paper we consider a log-regularized version of this family and use it as a family of potential functions to generate covariant (0,2) symmetric tensors on the space of invertible quantum states in finite dimensions. The geometric formalism developed here allows us to obtain the explicit expressions of such tensor fields in terms of a basis of globally defined differential forms on a suitable unfolding space without the need to introduce a specific set of coordinates. To make the reader acquainted with the intrinsic formalism introduced, we first perform the computation for the qubit case, and then, we extend the computation of the metric-like tensors to a generic n-level system. By suitably varying the parameters q and z, we are able to recover well-known examples of quantum metric tensors that, in our treatment, appear written in terms of globally defined geometrical objects that do not depend on the coordinates system used. In particular, we obtain a coordinate-free expression for the von Neumann–Umegaki metric, for the Bures metric and for the Wigner–Yanase metric in the arbitrary n-level case.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2019

Bioaugmentation of an Engineered Metal Treatment Wetland with Cupriavidus SRS

There are many chemical methods to remediate copper (Cu) from the environment. However, the use of microorganisms has been identified to be cheaper and more efficient in remediating toxic compounds in a method known as bioremediation. A microorganism, Cupriavidus SRS, is a metal resistant, rod shaped, gram negative bacteria that was isolated from a location with heavy metal contamination. As a predator this isolate has the ability to attack gram-negative and gram-positive bacteria. It is highly tolerant to Cu, and the isolates growth initiation is stimulated by Cu. Wang et al. (2015) determined that efflux pump activity is one of the most important mechanisms of heavy metal tolerance and the Cupriavidus genus demonstrates this behavior. In this study, Cupriavidus SRS will be inoculated to sediment and water from an area with high concentrations of Cu and zinc, to determine the ability of the isolate to grow and survive in a high level Cu wetland as well as the bioremoval efficiency. The H-02 wetland in the AL1 outfall area is an engineered wetland that was constructed to utilize natural processes associated with sediments and microbial communities to remove contaminants from waste waters at the Savannah River Site. Specifically, this wetland treats the building processes and runoff form the Tritium Processing Facility in H-area to prevent Cu and Zn from entering the water before the contaminants go in the Savannah River. Distributions of Cu and Zn follow organic matter levels with higher densities along the shoreline showing that metal concentrations correlate with organic matter content. Cupriavidus SRS Growth: Cupriavidus SRS was isolated at the Savannah River Site from an area with heavy metal contamination. Cultures were grown in R2A medium at 25 deg. C and shaken at 80 rpm for liquid cultures for 5 days. Sediment and Water Collection: All samples were collected from the AL1 Outfall area within the Department of Energy's Savannah River Site. Sediment cores, organic layer samples, and water samples were collected from the Inlet and Outlet cells in triplicate. Only water samples were collected from the basin. Cell Pellet: After centrifugation at 10,000 RPM for 10 minutes the supernatant was removed. 1 mL of phosphate buffer saline was added to the tube, vortexed, and recentrifuged. Inoculation of Sediment and Water: All samples were done in triplicate, vortexed after inoculation, and put on the shaker for 72 hours. Day 0 begins when the samples are removed from the shaker. Experimental Set-Up: All samples were done in triplicate. All sediment samples were centrifuged at 7500 RPM for 10 minutes on Day 0 and Day 5. All the sediment and water samples were filtered with a 0.2 μm nylon filters to obtain approximately 10 mL of supernatant on Day 0 and Day 3. pH was taken 24, 48, and 72 hours after the samples had been on the shaker. Plate Count: Plate counts were done on Day 0 and Day 3 to determine Cupriavidus SRS growth following a quantitative counting method from Seely et al. (1972). This project is ongoing and the goal is to determine if Cupriavidus SRS has the ability to uptake excess Cu out of the environment. These could be some possible results for the experiment: - The isolate uptakes too much Cu, dies, and releases Cu back into the environment. - The isolate is able to uptake Cu, continue to live, but chemically changes the environment introducing new problems. - The isolate is able to uptake Cu, continue to live, and does not disrupt the environment with toxic chemical changes.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗