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At least 1,369 records · Page 76

Effects of Correlated and Uncorrelated Gamma Rays on Neutron Multiplicity Counting

Neutron multiplicity counting relies on time correlation between neutron events to assay the fissile mass, (α,n) to spontaneous fission neutron ratio, and neutron self-multiplication of samples. Gamma-ray sensitive neutron multiplicity counters may misidentify gamma rays as neutrons and therefore miscalculate sample characteristics. Time correlated and uncorrelated gamma-ray-like signals were added into gamma-ray free neutron multiplicity counter data to examine the effects of gamma ray signals being misidentified as neutron signals on assaying sample characteristics. Multiplicity counter measurements with and without gamma-ray-like signals were compared to determine the assay error associated with gamma-ray-like signals at various gamma-ray and neutron rates. Correlated and uncorrelated gamma-ray signals each produced consistent but different measurement errors. Correlated gamma-ray signals most strongly led to fissile mass overestimates, whereas uncorrelated gamma-ray signals most strongly lead to (α,n) neutron overestimates. Gamma-ray sensitive neutron multiplicity counters may be able to account for the effects of gamma-rays on measurements to mitigate measurement uncertainties.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Improving Estimation of Betweenness Centrality for Scale-Free Graphs

Betweenness centrality is a graph statistic used to nd vertices that are participants in a large number of shortest paths in a graph. This centrality measure is commonly used in path and network interdiction problems and its complete form requires the calculation of all-pairs shortest paths for each vertex. This leads to a time complexity of O(jV jjEj), which is impractical for large graphs. Estimation of betweenness centrality has focused on performing shortest-path calculations on a subset of randomly- selected vertices. This reduces the complexity of the centrality estimation to O(jSjjEj); jSj < jV j, which can be scaled appropriately based on the computing resources available. An estimation strategy that uses random selection of vertices for seed selection is fast and simple to implement, but may not provide optimal estimation of betweenness centrality when the number of samples is constrained. Our experimentation has identi ed a number of alternate seed-selection strategies that provide lower error than random selection in common scale-free graphs. These strategies are discussed and experimental results are presented.

97 MATHEMATICS AND COMPUTING↗

Target Formulation and Construction in Mesh Quality Improvement

In the Target-matrix Optimization Paradigm (TMOP), it’s long been understood that one must create a set of target matrices before the mesh can be optimized. But there is still no general method to create correct, effective targets in response to a specific mesh quality improvement goal. The TMOP literature describes how certain sets of target matrices can be used to control the shape or size of mesh elements, but those examples address only a fraction of the problems that can occur in mesh quality improvement and were not derived from a general framework for target matrix construction. In this work, a general method of target construction is introduced based on an independent set of geometric parameters which are intrinsic to the Jacobian matrices upon which TMOP is based. The parameters enable a systematic approach to target definition and construction. The approach entails two parts. The first part defines correspondences between available raw data (stuff about the mesh and/or the physical solution) and intermediate data (e.g., a field of error estimates). Once the correspondences are established, the raw data is processed into intermediate field data existing on mesh sample points. The second part is to create a model that represents the values of the geometric target parameters as functions of the intermediate data. The model is then tested numerically to establish model constants and effectiveness. This systematic approach to target construction is illustrated in a set of examples to show how it can be applied to common problems in mesh optimization such as equidistribution of geometric properties, preservation of existing good quality, and adaptation of the mesh to the solution. The result is a systematic method of target construction for TMOP which can be applied to a wide variety of planar and volume mesh quality improvement tasks.

97 MATHEMATICS AND COMPUTING↗

Novel 3D Force Sensors for a Cost-Effective 3D Force Plate for Biomechanical Analysis

Three-dimensional force plates are important tools for biomechanics discovery and sports performance practice. However, currently, available 3D force plates lack portability and are often cost-prohibitive. To address this, a recently discovered 3D force sensor technology was used in the fabrication of a prototype force plate. Thirteen participants performed bodyweight and weighted lunges and squats on the prototype force plate and a standard 3D force plate positioned in series to compare forces measured by both force plates and validate the technology. For the lunges, there was excellent agreement between the experimental force plate and the standard force plate in the X-, Y-, and Z-axes (r = 0.950–0.999, p < 0.001). For the squats, there was excellent agreement between the force plates in the Z-axis (r = 0.996, p < 0.001). Across axes and movements, root mean square error (RMSE) ranged from 1.17% to 5.36% between force plates. Although the current prototype force plate is limited in sampling rate, the low RMSEs and extremely high agreement in peak forces provide confidence the novel force sensors have utility in constructing cost-effective and versatile use-case 3D force plates.

42 ENGINEERING↗

Unsupervised Parsing of Gaze Data with a Beta-process Vector Auto-regressive Hidden Markov Model

The first stage of analyzing eye-tracking data is commonly to code the data into sequences of fixations and saccades. This process is usually automated using simple, predetermined rules for classifying ranges of the time series into events, such as “if the dispersion of gaze samples is lower than the threshold, then code as a fixation; otherwise code as a saccade.” More recent approaches incorporate additional eye-movement categories in automated parsing algorithms, particularly glissades, by using time-varying, data-driven thresholds. We describe an alternative approach using the beta-process auto-regressive hidden Markov model (BP-AR-HMM). The BP-AR-HMM offers two main advantages over existing frameworks. First, it provides a statistical model for eye movement classification rather than a single estimate. Second, the BP-AR-HMM uses a latent process to model the number and nature of the types of eye-movements and hence is not constrained to predetermined categories. We applied the BP-AR-HMM both to high-sampling rate gaze data from Andersson, Larsson, Holmqvist, Stridh, and Nyström (2016) and to low-sampling rate data from the DIEM project (Mital, Smith, Hill, & Henderson, 2011). Driven by the data properties, the BP-AR-HMM identified clusters of samples resembling saccades, fixations and smooth pursuit, and a category that approximately corresponds to glissades (as well as blinks, errors, etc.). The BP-AR-HMM serves as an effective algorithm for data-driven event parsing alone or as an initial step in exploring the characteristics of gaze data sets.

eye tracking, fixation, fixation, saccade, smooth ↗

A Study of Quasar Selection in the Supernova Fields of the Dark Energy Survey

In this paper, we present a study of quasar selection using the supernova fields of the Dark Energy Survey (DES). We used a quasar catalog from an overlapping portion of the SDSS Stripe 82 region to quantify the completeness and efficiency of selection methods involving color, probabilistic modeling, variability, and combinations of color/probabilistic modeling with variability. In all cases, we considered only objects that appear as point sources in the DES images. We examine color selection methods based on the Wide-field Infrared Survey Explorer (WISE) mid-IR W1-W2 color, a mixture of WISE and DES colors (g - i and i-W1), and a mixture of Vista Hemisphere Survey and DES colors (g - i and i - K). For probabilistic quasar selection, we used XDQSO, an algorithm that employs an empirical multi-wavelength flux model of quasars to assign quasar probabilities. Our variability selection uses the multi-band χ 2 -probability that sources are constant in the DES Year 1 griz-band light curves. The completeness and efficiency are calculated relative to an underlying sample of point sources that are detected in the required selection bands and pass our data quality and photometric error cuts. We conduct our analyses at two magnitude limits, i < 19.8 mag and i < 22 mag. For the subset of sources with W1 and W2 detections, the W1-W2 color or XDQSOz method combined with variability gives the highest completenesses of >85% for both i-band magnitude limits and efficiencies of >80% to the bright limit and >60% to the faint limit; however, the giW1 and giW1+variability methods give the highest quasar surface densities. The XDQSOz method and combinations of W1W2/giW1/XDQSOz with variability are among the better selection methods when both high completeness and high efficiency are desired. We also present the OzDES Quasar Catalog of 1263 spectroscopically confirmed quasars from three years of OzDES observation in the 30 deg 2 of the DES supernova fields. Finally, the catalog includes quasars with redshifts up to z ~ 4 and brighter than i = 22 mag, although the catalog is not complete up to this magnitude limit.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

The Initial–Final Mass Relation for Hydrogen-deficient White Dwarfs

The initial–final mass relation represents the total mass lost by a star during the entirety of its evolution from the zero age main sequence to the white-dwarf cooling track. The semiempirical initial–final mass relation (IFMR) is largely based on observations of DA white dwarfs, the most common spectral type of white dwarf and the simplest atmosphere to model. We present a first derivation of the semiempirical IFMR for hydrogen-deficient (non-DA) white dwarfs in open star clusters. We identify a possible discrepancy between the DA and non-DA IFMRs, with non-DA white dwarfs ≈0.07 M {sub ⊙} less massive at a given initial mass. Such a discrepancy is unexpected based on theoretical models of non-DA formation and observations of field white dwarf mass distributions. If real, the discrepancy is likely due to enhanced mass loss during the final thermal pulse and renewed post-AGB evolution of the star. However, we are dubious that the mass discrepancy is physical and instead is due to the small sample size, to systematic issues in model atmospheres of non-DAs, and to the uncertain evolutionary history of Procyon B (spectral type DQZ). A significantly larger sample size is needed to test these assertions. In addition, we also present Monte Carlo models of the correlated errors for DA and non-DA white dwarfs in the initial–final mass plane. We find the uncertainties in initial–final mass determinations for individual white dwarfs can be significantly asymmetric, but the recovered functional form of the IFMR is grossly unaffected by the correlated errors.

79 ASTRONOMY AND ASTROPHYSICS↗

Derived Optimal Linear Combination Evapotranspiration (DOLCE): a global gridded synthesis ET estimate

Accurate global gridded estimates of evapotranspiration (ET) are key to understanding water and energy budgets, in addition to being required for model evaluation. Several gridded ET products have already been developed which differ in their data requirements, the approaches used to derive them and their estimates, yet it is not clear which provides the most reliable estimates. This paper presents a new global ET dataset and associated uncertainty with monthly temporal resolution for 2000–2009. Six existing gridded ET products are combined using a weighting approach trained by observational datasets from 159 FLUXNET sites. The weighting method is based on a technique that provides an analytically optimal linear combination of ET products compared to site data and accounts for both the performance differences and error covariance between the participating ET products. We examine the performance of the weighting approach in several in-sample and out-of-sample tests that confirm that point-based estimates of flux towers provide information on the grid scale of these products. We also provide evidence that the weighted product performs better than its six constituent ET product members in four common metrics. Uncertainty in the ET estimate is derived by rescaling the spread of participating ET products so that their spread reflects the ability of the weighted mean estimate to match flux tower data. While issues in observational data and any common biases in participating ET datasets are limitations to the success of this approach, future datasets can easily be incorporated and enhance the derived product.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Optimizing de novo genome assembly from PCR-amplified metagenomes

Background. Metagenomics has transformed our understanding of microbial diversity across ecosystems, with recent advances enabling de novo assembly of genomes from metagenomes. These metagenome-assembled genomes are critical to provide ecological, evolutionary, and metabolic context for all the microbes and viruses yet to be cultivated. Metagenomes can now be generated from nanogram to subnanogram amounts of DNA. However, these libraries require several rounds of PCR amplification before sequencing, and recent data suggest these typically yield smaller and more fragmented assemblies than regular metagenomes. Methods. Here we evaluate de novo assembly methods of 169 PCR-amplified metagenomes, including 25 for which an unamplified counterpart is available, to optimize specific assembly approaches for PCR-amplified libraries. We first evaluated coverage bias by mapping reads from PCR-amplified metagenomes onto reference contigs obtained from unamplified metagenomes of the same samples. Then, we compared different assembly pipelines in terms of assembly size (number of bp in contigs ≥ 10kb) and error rates to evaluate which are the best suited for PCR-amplified metagenomes. Results. Read mapping analyses revealed that the depth of coverage within individual genomes is significantly more uneven in PCR-amplified datasets versus unamplified metagenomes, with regions of high depth of coverage enriched in short inserts. This enrichment scales with the number of PCR cycles performed, and is presumably due to preferential amplification of short inserts. Standard assembly pipelines are confounded by this type of coverage unevenness, so we evaluated other assembly options to mitigate these issues. We found that a pipeline combining read deduplication and an assembly algorithm originally designed to recover genomes from libraries generated after whole genome amplification (single-cell SPAdes) frequently improved assembly of contigs ≥ 10kb by 10 to 100-fold for low input metagenomes. Conclusions. PCR-amplified metagenomes have enabled scientists to explore communities traditionally challenging to describe, including some with extremely low biomass or from which DNA is particularly difficult to extract. Here we show that a modified assembly pipeline can lead to an improved de novo genome assembly from PCR-amplified datasets, and enables a better genome recovery from low input metagenomes.

Roux, Simon↗

Optimizing de novo genome assembly from PCR-amplified metagenomes

Background: Metagenomics has transformed our understanding of microbial diversity across ecosystems, with recent advances enabling de novo assembly of genomes from metagenomes. These metagenome-assembled genomes are critical to provide ecological, evolutionary, and metabolic context for all the microbes and viruses yet to be cultivated. Metagenomes can now be generated from nanogram to subnanogram amounts of DNA. However, these libraries require several rounds of PCR amplification before sequencing, and recent data suggest these typically yield smaller and more fragmented assemblies than regular metagenomes. Methods: Here we evaluate de novo assembly methods of 169 PCR-amplified metagenomes, including 25 for which an unamplified counterpart is available, to optimize specific assembly approaches for PCR-amplified libraries. We first evaluated coverage bias by mapping reads from PCR-amplified metagenomes onto reference contigs obtained from unamplified metagenomes of the same samples. Then, we compared different assembly pipelines in terms of assembly size (number of bp in contigs ≥ 10kb) and error rates to evaluate which are the best suited for PCR-amplified metagenomes. Results: . Read mapping analyses revealed that the depth of coverage within individual genomes is significantly more uneven in PCR-amplified datasets versus unamplified metagenomes, with regions of high depth of coverage enriched in short inserts. This enrichment scales with the number of PCR cycles performed, and is presumably due to preferential amplification of short inserts. Standard assembly pipelines are confounded by this type of coverage unevenness, so we evaluated other assembly options to mitigate these issues. We found that a pipeline combining read deduplication and an assembly algorithm originally designed to recover genomes from libraries generated after whole genome amplification (single-cell SPAdes) frequently improved assembly of contigs ≥ 10kb by 10 to 100-fold for low input metagenomes. Conclusions: PCR-amplified metagenomes have enabled scientists to explore communities traditionally challenging to describe, including some with extremely low biomass or from which DNA is particularly difficult to extract. Here we show that a modified assembly pipeline can lead to an improved de novo genome assembly from PCR-amplified datasets, and enables a better genome recovery from low input metagenomes.

Roux, Simon↗

An isoparametric quadrilateral membrane element for NASTRAN

The geometric and kinematic properties of the element are described, along with development of the matrices and vectors which characterize the element. The necessity for considering small deviations from element planeness is discussed, and the approach taken to account for these deviations is described. The improved accuracy over the existing quadrilateral membrane is indicated by a sample calculation for which an analytical solution is available from beam theory. For the same finite element idealization, the errors in maximum displacement and stress were significantly reduced.

Adelman, H. M.↗

Optimal estimation for discrete time jump processes

Optimum estimates of nonobservable random variables or random processes which influence the rate functions of a discrete time jump process (DTJP) are obtained. The approach is based on the a posteriori probability of a nonobservable event expressed in terms of the a priori probability of that event and of the sample function probability of the DTJP. A general representation for optimum estimates and recursive equations for minimum mean squared error (MMSE) estimates are obtained. MMSE estimates are nonlinear functions of the observations. The problem of estimating the rate of a DTJP when the rate is a random variable with a probability density function of the form cx super K (l-x) super m and show that the MMSE estimates are linear in this case. This class of density functions explains why there are insignificant differences between optimum unconstrained and linear MMSE estimates in a variety of problems.

Vaca, M. V.↗

An autonomous Nimbus Doppler positioning system

A single-pass Doppler positioning system was developed at the GSFC in support of the Nimbus-6 mission. The system was designed to satisfy the following requirements: compatibility with the PDP 11/70 minicomputer; single-pass recovery of up to 250 positions with a two-sigma accuracy of 5 km; high reliability with a minimum of human interaction; and near real-time responsiveness. The system consists of a numerical integrator which includes only the J2 term (earth flattening) of the earth's gravity field, an editing routine, a first guess algorithm, a least squares position recovery program, and a routine for generating a 95% confidence circle based on a computer covariance matrix. An analysis and quantification of the following error sources that limit system accuracy are presented: orbit error, radial aliasing, computational difficulties with overhead passes, oscillator drift, and ambiguity problems. Results of system reliability tests and sample outputs are included.

Garza-Robles, R.↗

Electron microprobe analysis of trace elements in minerals at 10 PPM concentrations

An improved technique is developed for measuring backgrounds during trace element analysis of crystals and glass using electron microprobes. This technique overcomes major difficulties encountered with conventional techniques, such as the problem of obtaining the net X-ray intensity of the characteristic emission line of interest with sufficient precision and accuracy, as well as the error due to the inability to directly measure the intensity at the wavelength of the characteristic line on the sample being analyzed. It is shown that this technique can yield reproducible results to within 4 ppm in olivine, and has a minimum uncertainty and detection limit of 10 ppm Nd in olivine.

Mckay, G. A.↗

An experiment in software reliability

The results of a software reliability experiment conducted in a controlled laboratory setting are reported. The experiment was undertaken to gather data on software failures and is one in a series of experiments being pursued by the Fault Tolerant Systems Branch of NASA Langley Research Center to find a means of credibly performing reliability evaluations of flight control software. The experiment tests a small sample of implementations of radar tracking software having ultra-reliability requirements and uses n-version programming for error detection, and repetitive run modeling for failure and fault rate estimation. The experiment results agree with those of Nagel and Skrivan in that the program error rates suggest an approximate log-linear pattern and the individual faults occurred with significantly different error rates. Additional analysis of the experimental data raises new questions concerning the phenomenon of interacting faults. This phenomenon may provide one explanation for software reliability decay.

Dunham, J. R.↗

Modifying real convolutional codes for protecting digital filtering systems

A novel method is proposed for protecting digital filters from temporary and permanent failures that are not easily detected by conventional fault-tolerant computer design principles, on the basis of the error-detecting properties of real convolutional codes. Erroneous behavior is detected by externally comparing the calculated and regenerated parity samples. Great simplifications are obtainable by modifying the code structure to yield simplified parity channels with finite impulse response structures. A matrix equation involving the original parity values of the code and the polynomial of the digital filter's transfer function is formed, and row manipulations separate this equation into a set of homogeneous equations constraining the modifying scaling coefficients and another set which defines the code parity values' implementation.

Redinbo, G. R.↗

Probabilistic Causal Analysis for System Safety Risk Assessments in Commercial Air Transport

Aviation is one of the critical modes of our national transportation system. As such, it is essential that new technologies be continually developed to ensure that a safe mode of transportation becomes even safer in the future. The NASA Aviation Safety Program (AvSP) is managing the development of new technologies and interventions aimed at reducing the fatal aviation accident rate by a factor of 5 by year 2007 and by a factor of 10 by year 2022. A portfolio assessment is currently being conducted to determine the projected impact that the new technologies and/or interventions may have on reducing aviation safety system risk. This paper reports on advanced risk analytics that combine the use of a human error taxonomy, probabilistic Bayesian Belief Networks, and case-based scenarios to assess a relative risk intensity metric. A sample case is used for illustrative purposes.

Luxhoj, James T.↗

Sub-Nyquist Distortions in Sampled One- and Two-Dimensional Signals Studied

Hardware testing frequently involves the acquisition of waveform and instrumentation signals, which are often recorded on waveform recorders, oscillographs, and video recorders. Years ago, the waveforms were viewed as analog records, as drawn by a paper strip chart pen or electron beam on a cathode ray tube screen. One of the problems in the past was that the analog electronics may not have been able to accurately display the full amplitude of a signal if the real-time signals exceeded the frequency response bandwidth of the recording device. The advent of digital oscilloscopes, waveform recorders, and video frame-grabbers solved many of the frequency response problems, though not all. A restriction on digital waveform acquisition is well known by people in the instrumentation field. Put simply, the sampling frequency must be at least twice the frequency of any signal to be sampled, or vice versa; the signals must be filtered so that none of the signal frequencies are higher than one-half the sample rate (the Nyquist Limit). Then, per Shannon's Sampling Theorem (1949, ref. 1), any sampled signal can be reconstructed for viewing on a display device. If any signals exceed the Nyquist frequency limit, error signals called aliases occur in the output display.

Williams, Glenn L.↗