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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,387 records · Page 77
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Linking Pharmacogenomic Information on Drug Safety and Efficacy with Ethnic Minority Populations

Numerous prescription drugs’ labeling contains pharmacogenomic (PGx) information to aid health providers and patients in the safe and effective use of drugs. However, clinical studies for such PGx biomarkers and related drug doses are generally not conducted in diverse ethnic populations. Thus, it is urgently important to incorporate PGx information with genetic characteristics of racial and ethnic minority populations and utilize it to promote minority health. In this project a bioinformatics approach was developed to enhance the collection of PGx information related to ethnic minorities to pave the way toward understanding the population-wide utility of PGx information. To address this challenge, we first gathered PGx information from drug labels. Second, we extracted data on the allele frequency information of genetic variants in ethnic minority groups from public resources. Then, we collected published research articles on PGx biomarkers and related drugs for reference. Finally, the data were integrated and formatted to build a new PGx database containing information on known drugs and biomarkers for ethnic minority groups. This database provides scientific information needed to evaluate available PGx information to enhance drug dose selection and drug safety for ethnic minority populations.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2019

Arctic Vegetation Mapping Using Unsupervised Training Datasets and Convolutional Neural Networks

Land cover datasets are essential for modeling and analysis of Arctic ecosystem structure and function and for understanding land–atmosphere interactions at high spatial resolutions. However, most Arctic land cover products are generated at a coarse resolution, often limited due to cloud cover, polar darkness, and poor availability of high-resolution imagery. A multi-sensor remote sensing-based deep learning approach was developed for generating high-resolution (5 m) vegetation maps for the western Alaskan Arctic on the Seward Peninsula, Alaska. The fusion of hyperspectral, multispectral, and terrain datasets was performed using unsupervised and supervised classification techniques over a ~343 km 2 area, and a high-resolution (5 m) vegetation classification map was generated. An unsupervised technique was developed to classify high-dimensional remote sensing datasets into cohesive clusters. We employed a quantitative method to add supervision to the unlabeled clusters, producing a fully labeled vegetation map. We then developed convolutional neural networks (CNNs) using the multi-sensor fusion datasets to map vegetation distributions using the original classes and the classes produced by the unsupervised classification method. To validate the resulting CNN maps, vegetation observations were collected at 30 field plots during the summer of 2016, and the resulting vegetation products developed were evaluated against them for accuracy. Our analysis indicates the CNN models based on the labels produced by the unsupervised classification method provided the most accurate mapping of vegetation types, increasing the validation score (i.e., precision) from 0.53 to 0.83 when evaluated against field vegetation observations.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Microwave Flow Cytometric Detection and Differentiation of Escherichia coli

Label-free measurement and analysis of single bacterial cells are essential for food safety monitoring and microbial disease diagnosis. We report a microwave flow cytometric sensor with a microstrip sensing device with reduced channel height for bacterial cell measurement. Escherichia coli B and Escherichia coli K-12 were measured with the sensor at frequencies between 500 MHz and 8 GHz. The results show microwave properties of E. coli cells are frequency-dependent. A LightGBM model was developed to classify cell types at a high accuracy of 0.96 at 1 GHz. Thus, the sensor provides a promising label-free method to rapidly detect and differentiate bacterial cells. Nevertheless, the method needs to be further developed by comprehensively measuring different types of cells and demonstrating accurate cell classification with improved machine-learning techniques.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

High-Throughput Field Plant Phenotyping: A Self-Supervised Sequential CNN Method to Segment Overlapping Plants

High-throughput plant phenotyping—the use of imaging and remote sensing to record plant growth dynamics—is becoming more widely used. The first step in this process is typically plant segmentation, which requires a well-labeled training dataset to enable accurate segmentation of overlapping plants. However, preparing such training data is both time and labor intensive. To solve this problem, we propose a plant image processing pipeline using a self-supervised sequential convolutional neural network method for in-field phenotyping systems. This first step uses plant pixels from greenhouse images to segment nonoverlapping in-field plants in an early growth stage and then applies the segmentation results from those early-stage images as training data for the separation of plants at later growth stages. The proposed pipeline is efficient and self-supervising in the sense that no human-labeled data are needed. We then combine this approach with functional principal components analysis to reveal the relationship between the growth dynamics of plants and genotypes. We show that the proposed pipeline can accurately separate the pixels of foreground plants and estimate their heights when foreground and background plants overlap and can thus be used to efficiently assess the impact of treatments and genotypes on plant growth in a field environment by computer vision techniques. This approach should be useful for answering important scientific questions in the area of high-throughput phenotyping.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Non-Semisimple TQFT's and BPS q -Series

We propose and in some cases prove a precise relation between 3-manifold invariants associated with quantum groups at roots of unity and at generic q. Both types of invariants are labeled by extra data which plays an important role in the proposed relation. Bridging the two sides - which until recently were developed independently, using very different methods - opens many new avenues. In one direction, it allows to study (and perhaps even to formulate) q-series invariants labeled by spin c structures in terms of non-semisimple invariants. In the opposite direction, it offers new insights and perspectives on various elements of non-semisimple TQFT's, bringing the latter into one unifying framework with other invariants of knots and 3-manifolds that recently found realization in quantum field theory and in string theory.

3-manifold invariants↗
DOE OSTI2016

Measurement of the radiative decay rate and energy of the metastable (2s{sup 2}2p{sub 1/2}{sup 5}3s{sub 1/2}){sub (J=0)} level in Fe xvii

Measurements at the Livermore electron beam ion trap have been performed in order to infer the energy and the radiative lifetime of the (1s{sup 2}2s{sup 2}2p{sub 1/2}{sup 5}3s{sub 1/2}){sub J=0} level in the Fe xvii spectrum. This is the longest-lived level in the neonlike iron ion, and its radiative decay produces the Fe xvii line at 1153 Å, feeding the population of the (1s{sup 2}2s{sup 2}2p{sub 3/2}{sup 5}3s{sub 1/2}){sub J=1} upper level of one of the most prominent lines in the Fe xvii L-shell X-ray spectrum, commonly dubbed 3G. In the presence of a strong (⩾ few kG) magnetic field, the (1s{sup 2}2s{sup 2}2p{sub 1/2}{sup 5}3s{sub 1/2}){sub J=0} level has a finite probability to decay directly to the (1s{sup 2}2s{sup 2}2p{sup 6}){sub J=0} neonlike ground level via the emission of an L-shell X-ray. Our measurements allow us to observe this X-ray line in the Fe xvii L-shell spectrum and from it to infer the radiative rate for the magnetic dipole decay of the (1s{sup 2}2s{sup 2}2p{sub 1/2}{sup 5}3s{sub 1/2}){sub J=0} level to the (1s{sup 2}2s{sup 2}2p{sub 3/2}{sup 5}3s{sub 1/2}){sub J=1}. Our result of (1.45±0.15)×10{sup 4} s{sup −1} is in agreement with predictions. We have also measured the wavelength of the associated X-ray line to be 16.804 ± 0.002 Å, which means that the line is displaced 1.20 ± 0.05 eV from the neighboring (2s{sup 2}2p{sub 1/2}{sup 5}3s{sub 1/2}){sub J=1}→(2s{sup 2}2p{sup 6}){sub J=0} transition, commonly labeled 3F. From our measurement, we infer 5950570 ± 710 cm{sup −1} for the energy of the (1s{sup 2}2s{sup 2}2p{sub 1/2}{sup 5}3s{sub 1/2}){sub J=0} level.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

L-dwarf Detection from SDSS Images using Improved Faster R-CNN

We present a data-driven approach to automatically detect L dwarfs from Sloan Digital Sky Survey (SDSS) images using an improved Faster R-CNN framework based on deep learning. The established L-dwarf automatic detection (LDAD) model distinguishes L dwarfs from other celestial objects and backgrounds in SDSS field images by learning the features of 387 SDSS images containing L dwarfs. Applying the LDAD model to the SDSS images containing 93 labeled L dwarfs in the test set, we successfully detected 83 known L dwarfs with a recall rate of 89.25% for known L dwarfs. Several techniques are implemented in the LDAD model to improve its detection performance for L dwarfs, including the deep residual network and the feature pyramid network. As a result, the LDAD model outperforms the model of the original Faster R-CNN, whose recall rate of known L dwarfs is 80.65% for the same test set. The LDAD model was applied to detect L dwarfs from a larger validation set including 843 labeled L dwarfs, resulting in a recall rate of 94.42% for known L dwarfs. The newly identified candidates include L dwarfs, late M and T dwarfs, which were estimated from color (i – z) and spectral type relation. The contamination rates for the test candidates and validation candidates are 8.60% and 9.27%, respectively. The detection results indicate that our model is effective to search for L dwarfs from astronomical images.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

Masses and Ages for 230,000 LAMOST Giants, via Their Carbon and Nitrogen Abundances

We measure carbon and nitrogen abundances to a precision of ≲0.1 dex for 450,000 giant stars from their low-resolution (R∼1800) LAMOST DR2 survey spectra. We use these [C/M] and [N/M] measurements, together with empirical relations based on the APOKASC sample, to infer stellar masses and implied ages for 230,000 of these objects to 0.08 dex and 0.2 dex respectively. We use The Cannon, a data-driven approach to spectral modeling, to construct a predictive model for LAMOST spectra. Our reference set comprises 8125 stars observed in common between the APOGEE and LAMOST surveys, taking seven APOGEE DR12 labels (parameters) as ground truth: T{sub eff}, log g, [M/H], [α/M], [C/M], [N/M], and A{sub k}. We add seven colors to the Cannon model, based on the g, r, i, J, H, K, W1, W2 magnitudes from APASS, 2MASS, and WISE, which improves our constraints on T{sub eff} and log g by up to 20% and on A{sub k} by up to 70%. Cross-validation of the model demonstrates that, for high-S/N objects, our inferred labels agree with the APOGEE values to within 50 K in temperature, 0.04 mag in A{sub k}, and <0.1 dex in log g, [M/H], [C/M], [N/M], and [α/M]. We apply the model to 450,000 giants in LAMOST DR2 that have not been observed by APOGEE. This demonstrates that precise individual abundances can be measured from low-resolution spectra and represents the largest catalog to date of homogeneous stellar [C/M], [N/M], masses, and ages. As a result, we greatly increase the number and sky coverage of stars with mass and age estimates.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

Prospects for Measuring Abundances of >20 Elements with Low-resolution Stellar Spectra

Understanding the evolution of the Milky Way calls for the precise abundance determination of many elements in many stars. A common perception is that deriving more than a few elemental abundances ([Fe/H], [ α /Fe], perhaps [C/H], [N/H]) requires medium-to-high spectral resolution, R ≳ 10,000, mostly to overcome the effects of line blending. In a recent work, we presented an efficient and practical way to model the full stellar spectrum, even when fitting a large number of stellar labels simultaneously. In this paper, we quantify to what precision the abundances of many different elements can be recovered, as a function of spectroscopic resolution and wavelength range. In the limit of perfect spectral models and spectral normalization, we show that the precision of elemental abundances is nearly independent of resolution, for a fixed exposure time and number of detector pixels; low-resolution spectra simply afford much higher S/N per pixel and generally larger wavelength range in a single setting. We also show that estimates of most stellar labels are not strongly correlated with one another once R ≳ 1000. Modest errors in the line-spread function, as well as small radial velocity errors, do not affect these conclusions, and data-driven models indicate that spectral (continuum) normalization can be achieved well enough in practice. These results, to be confirmed with an analysis of observed low-resolution data, open up new possibilities for the design of large spectroscopic stellar surveys and for the reanalysis of archival low-resolution data sets.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

Determining Stellar Elemental Abundances from DESI Spectra with the Data-driven Payne

Abstract Stellar abundances for a large number of stars provide key information for the study of Galactic formation history. Large spectroscopic surveys such as the Dark Energy Spectroscopic Instrument (DESI) and LAMOST take median-to-low-resolution (R≲ 5000) spectra in the full optical wavelength range for millions of stars. However, the line-blending effect in these spectra causes great challenges for elemental abundance determination. Here we employDD-Payne, a data-driven method regularized by differential spectra from stellar physical models, to the DESI early data release spectra for stellar abundance determination. Our implementation delivers 15 labels, including effective temperatureT eff , surface gravity log g , microturbulence velocityv mic , and the abundances for 12 individual elements, namely C, N, O, Mg, Al, Si, Ca, Ti, Cr, Mn, Fe, and Ni. Given a spectral signal-to-noise ratio of 100 per pixel, the internal precisions of the label estimates are about 20 K forT eff , 0.05 dex for log g , and 0.05 dex for most elemental abundances. These results agree with the theoretical limits from the Crámer–Rao bound calculation within a factor of 2. The majority of the accreted halo stars contributed by the Gaia–Enceladus–Sausage are discernible from the disk and in situ halo populations in the resultant [Mg/Fe]–[Fe/H] and [Al/Fe]–[Fe/H] abundance spaces. We also provide distance and orbital parameters for the sample stars, which spread over a distance out to ∼100 kpc. The DESI sample has a significantly higher fraction of distant (or metal-poor) stars than the other existing spectroscopic surveys, making it a powerful data set for studying the Galactic outskirts. The catalog is publicly available.

Astronomy & Astrophysics↗
DOE OSTI2017

Measuring 14 Elemental Abundances with R = 1800 LAMOST Spectra

The LAMOST survey has acquired low-resolution spectra (R = 1800) for 5 million stars across the Milky Way, far more than any current stellar survey at a corresponding or higher spectral resolution. It is often assumed that only very few elemental abundances can be measured from such low-resolution spectra, limiting their utility for Galactic archaeology studies. However, Ting et al. used ab initio models to argue that low-resolution spectra should enable precision measurements of many elemental abundances, at least in theory. Here, we verify this claim in practice by measuring the relative abundances of 14 elements from LAMOST spectra with a precision of ≲0.1 dex for objects with S/N{sub LAMOST}≳30 (per pixel). We employ a spectral modeling method in which a data-driven model is combined with priors that the model gradient spectra should resemble ab initio spectral models. This approach assures that the data-driven abundance determinations draw on physically sensible features in the spectrum in their predictions and do not just exploit astrophysical correlations among abundances. Our analysis is constrained to the number of elemental abundances measured in the APOGEE survey, which is the source of the training labels. Obtaining high quality/resolution spectra for a subset of LAMOST stars to measure more elemental abundances as training labels and then applying this method to the full LAMOST catalog will provide a sample with more than 20 elemental abundances, which is an order of magnitude larger than current high-resolution surveys, substantially increasing the sample size for Galactic archaeology.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

PRMI: A Dataset of Minirhizotron Images for Diverse Plant Root Study

Understanding a plant's root system architecture (RSA) is crucial for a variety of plant science problem domains including sustainability and climate adaptation. Minirhizotron (MR) technology is a widely-used approach for phenotyping RSA non-destructively by capturing root imagery over time. Precisely segmenting roots from the soil in MR imagery is a critical step in studying RSA features. In this paper, we introduce a large-scale dataset of plant root images captured by MR technology. In total, there are over 72K RGB root images across six different species including cotton, papaya, peanut, sesame, sunflower, and switchgrass in the dataset. The images span a variety of conditions including varied root age, root structures, soil types, and depths under the soil surface. All of the images have been annotated with weak image-level labels indicating whether each image contains roots or not. The image-level labels can be used to support weakly supervised learning in plant root segmentation tasks. In addition, 63K images have been manually annotated to generate pixel-level binary masks indicating whether each pixel corresponds to root or not. These pixel-level binary masks can be used as ground truth for supervised learning in semantic segmentation tasks. By introducing this dataset, we aim to facilitate the automatic segmentation of roots and the research of RSA with deep learning and other image analysis algorithms.

Xu, Weihuang↗
DOE OSTI2025

Kinematic flow from the flow of cuts

The wavefunction coefficients of conformally coupled scalars in power-law FRW cosmologies satisfy differential equations governed by a set of simple combinatorial rules known as the kinematic flow. In this paper we derive the kinematic flow, expressed using a set of differential forms referred to as the cut basis, from a geometric perspective, relying solely on the cosmological hyperplane arrangement and without invoking bulk physics. Each element of the cut basis corresponds to the positive geometry associated to an independent cut of the physical FRW-form and can be labeled by decorating (minors of) the truncated Feynman graph with an acyclic orientation. We provide a straightforward prescription to associate a logarithmic differential form to each element of the cut basis by considering its corresponding decorated graph. Moreover, we show that the residues of the physical FRW-form are canonical forms of certain graphical zonotopes labeled by the same set of decorated graphs. These zonotopes control the cut combinatorics -- flow of cuts -- of the physical FRW-form and the cut basis (by construction). Using the theory of relative twisted cohomology and intersection theory, we derive a closed form formula for the differential equations of the cut basis. We also introduce combinatorial rules that compute the kinematic differential of any basis element without explicit calculation. The combinatorics of our differential equations is a natural consequence of the flow of cuts and is equivalent (up to rescaling) to the kinematic flow for the recently studied time integral basis. In particular, our differential equations decouple into exponentially many sectors, one for each way of cutting a subset of edges of the graph.

General Relativity and Quantum Cosmology↗
DOE OSTI2026

Leveraging machine learning to enhance aerosol classification using Single-Particle Mass Spectrometry

Advancing automated classification of atmospheric aerosols from Single-Particle Mass Spectrometry (SPMS) data remains challenging due to overlapping ion signatures, compositional diversity, and limited labeled data. This study evaluates supervised and semi-supervised learning frameworks to enhance aerosol identification by jointly leveraging labeled and unlabeled spectra. Four models were compared: a supervised Support Vector Machine (SVM), a self-training SVM, a stacked autoencoder classifier, and a stacked autoencoder trained using a temporal-ensembling Mean Teacher approach. All models achieved high and stable accuracies (90.0 %–91.1 %), surpassing previous results on the same dataset (87 %) and matching the performance of state-of-the-art deep learning methods. Despite small global metric differences (≤ 1 %), semi-supervised variants yielded up to 5 %–10 % improvements for compositionally rare particle types – such as soot (0.77 % of spectra, F1-score: 0.93–0.97) and hazelnut pollen (0.98 % of spectra, F1-score: 0.97–1.00) – equating to roughly ∼ 187 additional correctly classified spectra. These gains are scientifically significant, as such rare particles exert disproportionate influence on radiative absorption and ice nucleation processes; their improved detection reduces modeled uncertainties in aerosol absorption optical depth and mixed-phase cloud ice nucleation rates. The models' residual misclassifications (≈ 9 %) largely arise from true spectral overlap among chemically adjacent species (e.g., Na- vs. K-feldspar, coated vs. uncoated feldspars), reflecting physical compositional continuity rather than algorithmic error. Collectively, these findings demonstrate that leveraging unlabeled data to learn robust spectral representations and refine classification enhances both fidelity and interpretability, bridging data-driven analysis with aerosol–climate process understanding.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2026

Pythia8 Quark and Gluon Jets (float32)

A float32 (single-precision) version of the quark and gluon jet dataset originally published by Komiske, Metodiev, and Thaler (Zenodo record 3164691). Only the 20-file subset without charm and bottom quark jets is included here. All simulation parameters and jet selection criteria are identical to the original: Pythia 8.226, √s = 14 TeV Quarks from WeakBosonAndParton:qg2gmZq, gluons from WeakBosonAndParton:qqbar2gmZg with the Z decaying to neutrinos FastJet 3.3.0, anti-k_t jets with R = 0.4 p_T^jet ∈ [500, 550] GeV, |y^jet| < 1.7 There are 20 files, each in compressed NumPy format (QG_jets_fp32_0.npz through QG_jets_fp32_19.npz). Each file contains two arrays: X: (100000, M, 4) — 50k quark and 50k gluon jets, randomly sorted, padded to max multiplicity M, with particle features (pt, rapidity, azimuthal angle, pdgid) stored as float32 y: (100000,) — jet labels, gluon = 0, quark = 1 The original dataset stores X in float64. Here X has been cast to float32, approximately halving file size. The y labels are unchanged. If you use this dataset, please cite the original Zenodo record and its associated paper: Komiske, Metodiev, Thaler, Energy Flow Networks: Deep Sets for Particle Jets, JHEP 01 (2019) 121, arXiv:1810.05165

energyflow↗
DOE OSTI2026

Pythia8 Quark and Gluon Jets (float16)

A float16 (half-precision) version of the quark and gluon jet dataset originally published by Komiske, Metodiev, and Thaler (Zenodo record 3164691). Only the 20-file subset without charm and bottom quark jets is included here. All simulation parameters and jet selection criteria are identical to the original: Pythia 8.226, √s = 14 TeV Quarks from WeakBosonAndParton:qg2gmZq, gluons from WeakBosonAndParton:qqbar2gmZg with the Z decaying to neutrinos FastJet 3.3.0, anti-k_t jets with R = 0.4 p_T^jet ∈ [500, 550] GeV, |y^jet| < 1.7 There are 20 files, each in compressed NumPy format (QG_jets_fp32_0.npz through QG_jets_fp32_19.npz). Each file contains two arrays: X: (100000, M, 4) — 50k quark and 50k gluon jets, randomly sorted, padded to max multiplicity M, with particle features (pt, rapidity, azimuthal angle, pdgid) stored as float32 y: (100000,) — jet labels, gluon = 0, quark = 1 The original dataset stores X in float64. Here X has been cast to float16, approximately halving file size. The y labels are unchanged. Users should be aware that float16 has limited dynamic range and precision. If you use this dataset, please cite the original Zenodo record and its associated paper: Komiske, Metodiev, Thaler, Energy Flow Networks: Deep Sets for Particle Jets, JHEP 01 (2019) 121, arXiv:1810.05165

energyflow↗
DOE OSTI2026

Pythia8 Quark and Gluon Jets (float8 e4m3FN)

A float8 (e4m3FN) quantized version of the quark and gluon jet dataset originally published by Komiske, Metodiev, and Thaler (Zenodo record 3164691). Only the 20-file subset without charm and bottom quark jets is included here. All simulation parameters and jet selection criteria are identical to the original: Pythia 8.226, √s = 14 TeV Quarks from WeakBosonAndParton:qg2gmZq, gluons from WeakBosonAndParton:qqbar2gmZg with the Z decaying to neutrinos FastJet 3.3.0, anti-k_t jets with R = 0.4 p_T^jet ∈ [500, 550] GeV, |y^jet| < 1.7 There are 20 files, each in compressed NumPy format (QG_jets_fp8e4m3fn_0.npz through QG_jets_fp8e4m3fn_19.npz). Each file contains two arrays: X: (100000, M, 4) — 50k quark and 50k gluon jets, randomly sorted, padded to max multiplicity M, with particle features (pt, rapidity, azimuthal angle, pdgid) y: (100000,) — jet labels, gluon = 0, quark = 1 Since NumPy has no native fp8 dtype, X is stored as float32, but the values have been quantized through TensorFlow's float8_e4m3fn type and carry only fp8 precision. The quantization procedure is as follows: a global per-channel scale factor is computed from the absolute maximum value across all 20 chunks (with FP8_MAX = 448.0, the maximum representable value of e4m3FN). Each chunk is then scaled into the fp8 dynamic range, round-tripped through tf.experimental.float8_e4m3fn, and scaled back. This global scaling ensures a consistent quantization grid across the full dataset. The y labels are unchanged. Users should be aware that e4m3FN has limited dynamic range and precision. We recommend verifying this format is appropriate for your application; for a less aggressive reduction see the float16 and float32 versions linked below. If you use this dataset, please cite the original Zenodo record and its associated paper: Komiske, Metodiev, Thaler, Energy Flow Networks: Deep Sets for Particle Jets, JHEP 01 (2019) 121, arXiv:1810.05165

DiLullo, Nicholas [Brown University] (ORCID:000000↗