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At least 1,387 records · Page 77

Portable interactive visualization of large-scale simulations in geotechnical engineering using Unity3D

Development in large-scale geotechnical engineering simulation places tremendous demand for efficient visualization of such simulation data. This study presents a lightweight software tool, i.e. Geotechnical Interactive Visualization (GIV), as a solution to this challenge, which achieves efficient interactive visualization of large-scale simulations data in geotechnical engineering. Visualization data flow and algorithms specifically optimized for common geotechnical engineering applications are implemented in GIV. GIV can visualize geotechnical structure models with time-varying attributes attached to mesh with fixed topology, and also models with time-varying mesh topologies but no attributes attached, the two most common visualization tasks in geotechnical engineering. Furthermore, challenges for large-scale simulation data visualization, including parallel simulation data redundancy, massive data size, dynamic user interaction, and portability are overcome via specifically designed algorithms for simulation data preprocessing and optimized visualization modules using the powerful 3D rendering and interactive game engine Unity3D. Comparison of GIV with several widely used visualization tools for the visualization of large-scale idealized datasets and realistic geotechnical simulations highlights the visualization efficiency, smooth interactivity, and lightweight features of GIV.

42 ENGINEERING↗

On the convergence of statistics in simulations of stationary incompressible turbulent flows

When reporting statistics from simulations of statistically stationary chaotic phenomenon, it is important to verify that the simulations are time-converged. This condition is connected with the statistical error or number of digits with which statistics can be reliably reported. In this work we consider numerical experiments of low Reynolds number incompressible homogeneous and isotropic turbulence as a model problem to investigate statistical convergence over finite simulation times. Specifically, we investigate the time integration requirements that allow meaningful reporting of the statistical error associated with finiteness of the temporal domain. We address two key questions: (1) How long should a simulation be performed in terms of large eddy time, and (2) How should the simulation time be divided among temporal windows over which a quantity of interest is estimated so that its statistical error could be reliably reported? We find that reliable reporting of statistical errors requires simulations on the order of 10 4 large eddy times, which is orders of magnitude longer than typically performed. Additionally, data post-processing should employ windows of at least ten times the large eddy time scale, with the most robust computation of statistical error of the mean requiring window sizes of an additional factor of ten. For practical simulations, we demonstrate that it is possible to estimate the statistical error within a factor of two under a less stringent condition in which a minimum of four windows with size at least ten large eddy times are used. In conclusion, our observations for homogeneous isotropic turbulence are also shown to hold in turbulent channel flow.

42 ENGINEERING↗

Closed-loop simulation with Grad-Shafranov equilibrium evolution for plasma control system development

Plasma control design increasingly depends on fast simulations able to connect to operational plasma control system (PCS) software for iterative development. GSevolve is a nonlinear free-boundary simulation that evolves the Grad-Shafranov equilibrium including current and pressure profiles, and can connect to all versions of the DIII-D PCS operational on devices around the world. Its ability to simulate the evolution of current continuously from open to closed field lines enables GSevolve to simulate full-discharge control from breakdown through plasma termination. GSevolve is compliant with the Plasma Control System Simulation Platform (PCSSP), a Matlab/Simulink®-based environment that serves as the primary framework for development of the ITER Plasma Control System (PCS). The code employs a novel response function-updating scheme to achieve fast simulations. The plasma evolves linearly until a significant shape change triggers a nonlinear update of the response while enforcing a prescribed accuracy. Old responses are recalled if the plasma changes back to an old shape. The equilibrium is a function of a state vector containing axisymmetric conductor currents and parameters related to parallel and perpendicular currents, which evolves according to an efficient state space circuit formulation. Control design and validation results are presented for simulations of DIII-D and EAST, connected to their corresponding versions of the DIII-D PCS.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

3D xRAGE simulation of inertial confinement fusion implosion with imposed mode 2 laser drive asymmetry

Low-mode asymmetries represent an important obstacle to achieving high-gain inertial confinement fusion implosions. As a step in learning how to control such effects, an OMEGA experiment with imposed mode 2 laser drive asymmetries was done to study the expected signatures of this type of asymmetry [M. Gatu Johnson et al., PRE 2018]. In the present work, a 3D xRAGE simulation including the stalk mount has been brought to bear on the data from that experiment. Furthermore, comprehensive comparisons between simulated and measured observables are made. Good agreement between simulated and measured x-ray image-inferred shell trajectories, bang times and neutron emission widths are seen, showing that the hydrodynamics are well captured in the simulation. Asymmetries seen in simulated and measured time-resolved and time-integrated x-ray images and areal densities also compare well, showing impact of both stalk and mode 2. On the other hand, important differences in measured and simulated neutron emission histories, yield, and ion temperature (T ion ) asymmetries are seen, suggesting that the simulation is overestimating shock yield. Overall, the results clearly demonstrate the importance of considering all asymmetry sources when interpreting measured signatures of asymmetry.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Application of Geant4 Monte Carlo simulation in dose calculations for small radiosurgical fields

The Geant4 toolkit was used to develop a Monte Carlo (MC)-based engine for accurate dose calculations in small radiation field sizes. The Geant4 toolkit (version 10.1.p02) was used to simulate 6-MV photon beam of a Varian2100C linear accelerator that is being used for stereotactic radiosurgery (SRS) treatment with small radiation fields. Geometric models of 3 in-house designed radiosurgical divergent cones, with the diameters of their projections at the isocenter being 10, 20, and 30 mm, were simulated. The accuracy of the MC simulation technique was examined by reproducing several different simulated dosimetric parameters of the primary beams with the experimental data. The dose distributions are first checked for single beams for each cone, then standard multiple field (SMF) techniques are applied. A sample set of DICOM files from computed tomography (CT) scan imaging of a patient's head was converted to the Geant4 geometry format to implement MC-based engine for a clinical test. To validate the accuracy of the MC-based calculations for SMF arrangements, the isodose lines from MC simulation in water phantom were compared with the measured isodose lines using EBT3 Gafchromic film in Solid Water phantoms. Agreements between measured and simulated depth dose values and beam profiles for SRS cones were generally within 2%/2 mm. For output factors, the largest discrepancy was observed for 10 mm SRS cone, which was 1.7%. For SMF techniques, in SRS cones, the MC simulation and EBT3 Gafchromic film dosimetry were in acceptable agreement (5%/5 mm). Excellent agreement between the results of the MC-based and measured dose values for both single and SMF techniques in SRS cones indicates the ability of the Geant4 toolkit to be applied as the platform for treatment planning of advanced radiotherapy techniques.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

POLARRIS: A POLArimetric Radar Retrieval and Instrument Simulator

This paper introduces a synthetic polarimetric radar simulator and retrieval package, POLArimetric Radar Retrieval and Instrument Simulator (POLARRIS), for evaluating cloud-resolving models (CRMs). POLARRIS is composed of forward (POLARRIS-f) and inverse (retrieval and diagnostic) components (iPOLARRIS) to generate not only polarimetric radar observables ($Z_h, Z_{dr}, K_{dp}, ρ_{hv})$ but also radar-consistent geophysical parameters such as hydrometeor identification, vertical velocity, and rainfall rates retrieved from CRM data. To demonstrate its application and uncertainties, POLARRIS is applied to simulations of a mesoscale convective system over the Southern Great Plains on 23 May 2011, using the Weather Research and Forecasting model with both spectral bin microphysics (SBM) and the Goddard single-moment bulk 4ICE microphysics. Statistical composites reveal a significant dependence of simulated polarimetric observables $(Z_{dr}, K_{dp})$ on the assumptions of the particle axis ratio (oblateness) and orientation angle distributions. We note the simulated polarimetric variables differ considerably between the SBM and 4ICE microphysics in part due to the differences in their ice particle size distributions as revealed by comparisons with aircraft measurements. Regardless of these uncertainties, simulated hydrometeor identification distributions overestimate graupel and hail fractions, especially from the simulation with SBM. To minimize uncertainties in forward model, the particle shape and orientation angle distributions of frozen particles should be predicted in a microphysics scheme in addition to the size distributions and particle densities.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Long-time simulations for fixed input states on quantum hardware

Publicly accessible quantum computers open the exciting possibility of experimental dynamical quantum simulations. While rapidly improving, current devices have short coherence times, restricting the viable circuit depth. Despite these limitations, we demonstrate long-time, high fidelity simulations on current hardware. Specifically, we simulate an XY-model spin chain on Rigetti and IBM quantum computers, maintaining a fidelity over 0.9 for 150 times longer than is possible using the iterated Trotter method. Our simulations use an algorithm we call fixed state Variational Fast Forwarding (fsVFF). Recent work has shown an approximate diagonalization of a short time evolution unitary allows a fixed-depth simulation. fsVFF substantially reduces the required resources by only diagonalizing the energy subspace spanned by the initial state, rather than over the total Hilbert space. We further demonstrate the viability of fsVFF through large numerical simulations, and provide an analysis of the noise resilience and scaling of simulation errors.

97 MATHEMATICS AND COMPUTING↗

Divertor heat flux simulations in ELMy H-mode discharges of EAST

This paper presents heat flux simulations for the ELMy H-mode on the Experimental Advanced Superconducting Tokamak (EAST) using a six-field two-fluid model in BOUT++. Three EAST ELMy H-mode discharges with different plasma currents I p and geometries are studied. The trend of the scrape-off layer width $\lambda_{q}$ with I p is reproduced by the simulation. The simulated width is only half of that derived from the EAST scaling law, but agrees well with the international multi-machine scaling law. Note that there is no radio-frequency (RF) heating scheme in the simulations, and RF heating can change the boundary topology and increase the flux expansion. Anomalous electron transport is found to contribute to the divertor heat fluxes. A coherent mode is found in the edge region in simulations. The frequency and poloidal wave number $k_{\theta}$ are in the range of the edge coherent mode in EAST. The magnetic fluctuations of the mode are smaller than the electric field fluctuations. Statistical analysis of the type of turbulence shows that the turbulence transport type (blobby or turbulent) does not influence the heat flux width scaling. Here, the two-point model differs from the simulation results but the drift-based model shows good agreement with simulations.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Performance assessment of PHITS simulations for the inverse-kinematic p( 7 Li,n) 7 Be reaction based on fast-neutron measurements with a diamond detector

The inverse-kinematics p( 7 Li,n) 7 Be reaction produces forward-focused neutron emission, offering enhanced usable flux and reduced shielding requirements. Reliable simulation of such neutron fields is essential for the development of compact accelerator-based neutron sources. In this study, a PHITS-based simulation framework for the reaction was experimentally assessed using fast-neutron measurements. Forward-directed neutrons were measured with a diamond neutron detector and quantitatively compared with simulations with newly prepared IK-Frag cross-section file based on the proton-induced reaction data in ENDF/B-VIII.1, TENDL-2023, and JENDL-4.0/HE. Measurements and simulations were performed for incident 7 Li 3+ energies ranging from 15.0 to 25.0 MeV using a 50 μm-thick polypropylene target. For all conditions, the PHITS-based simulation framework reproduced the deposited energy spectra at the correct order of magnitude. The comparison of deposited energy spectra in the diamond detector showed high correlation coefficients across all investigated energies, indicating reasonable agreement in spectral shape between simulations and measurements. This work represents an initial step toward establishing a benchmark for PHITS simulations of the inverse kinematic reaction between an incident lithium-ion and a proton target.

43 PARTICLE ACCELERATORS↗

Covariance matrices for variance-suppressed simulations

ABSTRACT Cosmological N-body simulations provide numerical predictions of the structure of the Universe against which to compare data from ongoing and future surveys, but the growing volume of the Universe mapped by surveys requires correspondingly lower statistical uncertainties in simulations, usually achieved by increasing simulation sizes at the expense of computational power. It was recently proposed to reduce simulation variance without incurring additional computational costs by adopting fixed-amplitude initial conditions. This method has been demonstrated not to introduce bias in various statistics, including the two-point statistics of galaxy samples typically used for extracting cosmological parameters from galaxy redshift survey data, but requires us to revisit current methods for estimating covariance matrices of clustering statistics for simulations. In this work, we find that it is not trivial to construct covariance matrices analytically for fixed-amplitude simulations, but we demonstrate that ezmock (Effective Zel’dovich approximation mock catalogue), the most efficient method for constructing mock catalogues with accurate two- and three-point statistics, provides reasonable covariance matrix estimates for such simulations. We further examine how the variance suppression obtained by amplitude-fixing depends on three-point clustering, small-scale clustering, and galaxy bias, and propose intuitive explanations for the effects we observe based on the ezmock bias model.

79 ASTRONOMY AND ASTROPHYSICS↗

Scalable quantum simulations of scattering in scalar field theory on 120 qubits

Simulations of collisions of fundamental particles on a quantum computer are expected to have an exponential advantage over classical methods and promise to enhance searches for new physics. Furthermore, scattering in scalar field theory has been shown to be bounded-error quantum polynomial time (BQP) complete, making it a representative problem for which quantum computation is efficient. As a step toward large-scale quantum simulations of collision processes, scattering of wave packets in one-dimensional scalar field theory is simulated using 120 qubits of IBM’s Heron superconducting quantum computer ibm_fez. Variational circuits compressing vacuum preparation, wave packet initialization, and time evolution are determined using classical resources. By leveraging physical properties of states in the theory, such as symmetries and locality, the variational quantum algorithm constructs scalable circuits that can be used to simulate arbitrarily large system sizes. A new strategy is introduced to mitigate errors in quantum simulations, which enables the extraction of meaningful results from circuits with up to 4924 two-qubit gates and two-qubit gate depths of 103. The effect of interactions is clearly seen, and is found to be in agreement with classical matrix product state simulations. Finally, the developments that will be necessary to simulate high-energy inelastic collisions on a quantum computer are discussed.

quantum circuits↗

Internal protein motions in molecular-dynamics simulations of Bragg and diffuse X-ray scattering

Molecular-dynamics (MD) simulations of Bragg and diffuse X-ray scattering provide a means of obtaining experimentally validated models of protein conformational ensembles. This paper shows that compared with a single periodic unit-cell model, the accuracy of simulating diffuse scattering is increased when the crystal is modeled as a periodic supercell consisting of a 2 × 2 × 2 layout of eight unit cells. The MD simulations capture the general dependence of correlations on the separation of atoms. There is substantial agreement between the simulated Bragg reflections and the crystal structure; there are local deviations, however, indicating both the limitation of using a single structure to model disordered regions of the protein and local deviations of the average structure away from the crystal structure. Although it was anticipated that a simulation of longer duration might be required to achieve maximal agreement of the diffuse scattering calculation with the data using the supercell model, only a microsecond is required, the same as for the unit cell. Rigid protein motions only account for a minority fraction of the variation in atom positions from the simulation. The results indicate that protein crystal dynamics may be dominated by internal motions rather than packing interactions, and that MD simulations can be combined with Bragg and diffuse X-ray scattering to model the protein conformational ensemble.

59 BASIC BIOLOGICAL SCIENCES↗

Simulation Exploration through Immersive Parallel Planes

We present a visualization-driven simulation system that tightly couples systems dynamics simulations with an immersive virtual environment to allow analysts to rapidly develop and test hypotheses in a high-dimensional parameter space. To accomplish this, we generalize the two-dimensional parallel-coordinates statistical graphic as an immersive 'parallel-planes' visualization for multivariate time series emitted by simulations running in parallel with the visualization. In contrast to traditional parallel coordinate's mapping the multivariate dimensions onto coordinate axes represented by a series of parallel lines, we map pairs of the multivariate dimensions onto a series of parallel rectangles. As in the case of parallel coordinates, each individual observation in the dataset is mapped to a polyline whose vertices coincide with its coordinate values. Regions of the rectangles can be 'brushed' to highlight and select observations of interest: a 'slider' control allows the user to filter the observations by their time coordinate. In an immersive virtual environment, users interact with the parallel planes using a joystick that can select regions on the planes, manipulate selection, and filter time. The brushing and selection actions are used to both explore existing data as well as to launch additional simulations corresponding to the visually selected portions of the input parameter space. As soon as the new simulations complete, their resulting observations are displayed in the virtual environment. This tight feedback loop between simulation and immersive analytics accelerates users' realization of insights about the simulation and its output.

97 MATHEMATICS AND COMPUTING↗

Monte Carlo-Based Method for Parallelizing Quasi-Static Time-Series Power System Simulations: Preprint

Both commercial and open source power system simulators run quasi-static time-series (QSTS) simulations sequentially. For yearlong high-resolution load profiles this sequential execution of load flows incurs long computation times. Parallelizing QSTS simulations on multiple processors is one possible way to reduce the computation time. Parallelization however introduces errors in the simulation results as the initial state of the system at the beginning of each parallelized time period is not known. In this work a Monte Carlo-based approach has been proposed to estimate the initial state of the system for each parallel simulation run to mitigate the errors in the final results. Classical sequential QSTS simulation is the chosen base case against which all other methods have been compared. Results presented in this paper show that the proposed method improves the simulation results considerably. This paper also discusses possible sensitivities of the proposed method to a number of tunable parameters. Additionally, sensitivity analysis results for a number of parameters have also been presented in the results section.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Development of HELICS-Based High-Performance Cyber-Physical Co-Simulation Framework for Distributed Energy Resources Applications

The rapid growth of distributed energy resources (DERs) has prompted increasing interest in the monitoring and control of DERs through hybrid smart grid communications resulting in the typical smart grid cyber-physical system. To fully understand the interdependency between them, we propose to integrate the Network Simulator 3 (NS3) into the High Engine for Large-Scale Infrastructure Co-Simulation (HELICS), a new open-source, cyber-physical-energy co-simulation platform. This paper aims to the development and case study of the HELICS-based high performance distribution-communication co-simulation framework for the DER coordination. The novel co-simulation framework for the NS3 integrating into the HELICS is developed. The DER monitoring application about hybrid smart grid communication network design is simulated and validated on this proposed HELICS-based cyber-physical co-simulation platform.

41 EE - Solar Energy Technologies Office (EE-4S)↗

Comparison of Eulerian Bin and Lagrangian Particle-Based Schemes in Simulations of Pi Chamber Dynamics and Microphysics

This paper presents a comparison of simulations applying either a traditional Eulerian bin microphysics or a novel particle-based Lagrangian approach to represent CCN activation and cloud droplet growth. The Eulerian microphysics solve the evolution equation for the spectral density function, whereas the Lagrangian approach follows computational particles referred to as superdroplets. Each superdroplet represents a multiplicity of natural droplets that makes the Lagrangian approach computationally feasible. The two schemes apply identical representation of CCN activation and use the same droplet growth equation; these make direct comparison between the two schemes practical. The comparison, the first of its kind, applies an idealized simulation setup motivated by laboratory experiments with the Pi Chamber and previous model simulations of the Pi Chamber dynamics and microphysics. The Pi Chamber laboratory apparatus considers interactions between turbulence, CCN activation, and cloud droplet growth in moist Rayleigh–Bénard convection. Simulated steady-state droplet spectra averaged over the entire chamber are similar, with the mean droplet concentration, mean radius, and spectral width close in Eulerian and Lagrangian simulations. Small differences that do exist are explained by the inherent differences between the two schemes and their numerical implementation. The local droplet spectra differ substantially, again in agreement with the inherent limitations of the theoretical foundation behind each approach. There is a general agreement between simulations and Pi Chamber observations, with simplifications of the CCN activation and droplet growth equation used in the simulations likely explaining specific differences.

54 ENVIRONMENTAL SCIENCES↗

Race conditions and data partitioning: risks posed by common errors to reproducible parallel simulations

When parallel algorithms for simulation were introduced in the 1970s, their development and use interested only experts in parallel computation. This circumstance changed as multi-core processors became commonplace, putting a parallel computer into the hands of every modeler. A natural outcome is growing interest in parallel simulation among persons not intimately familiar with parallel computing. At the same time, parallel simulation tools continue to be developed with the implicit assumption that the modeler is knowledgeable about parallel programming. The unintended consequence is a rapidly growing number of users of parallel simulation tools that are unlikely to recognize when the interaction of race conditions, partitioning strategies, and simultaneous action in their simulation models make results non-reproducible, thereby calling into question the validity of conclusions drawn from the simulation data. Here, we illustrate the potential dangers of exposing parallel algorithms to users who are not experts in parallel computation with example models constructed using existing parallel simulation tools. By doing so, we hope to refocus tool developers on usability, even if this new focus incurs loss of some performance.

97 MATHEMATICS AND COMPUTING↗

Relativistic Modeling Capabilities in Perseus Extended MHD Simulation Code for HED Plasmas

This project is submitted in response to DE-FOA-0001153, and will be carried out by Dr. Charles Seyler and Dr. Nathaniel Hamlin as post doc under the direction of Professor Seyler. The objectives are to enable PERSEUS to self-consistently model relativistic high-energy-density (HED) laboratory and astrophysical phenomena. Electrons and ions in a plasma are generally modeled either as fluids using a two-fluid code, like PERSEUS, or as particles using a Particle-In- Cell (PIC) code. Nonrelativistic PERSEUS solves the two-fluid equations, formulated in terms of a generalized Ohm’s law (GOL), so as to model about nine orders of magnitude in density variation using a local semi-implicit method. Relativistic PERSEUS preserves this structure and therefore retains these advantageous properties, enabling it to model a broader range of relativistic HED phenomena than previous codes. We have also overcome a major technical challenge associated with solving a relativistic system of equations relating conserved quantities (momentum, energy, etc.) to primitive variables (density, velocity, and pressure). We have thus far developed a relativistic version of PERSEUS and demonstrated that it recovers expected nonrelativistic results. We are currently using relativistic PERSEUS to model two HED phenomena, namely laser-plasma interactions and X-pinches, both of which show spectroscopic evidence of relativistic electrons. In an X-pinch, a section of wire carrying sufficiently large current forms a plasma column that pinches down to a point-like source, generating X-rays for use in radiographic imaging. Laser-plasma interactions have been simulated using PIC codes, and we use their results as a benchmark for comparison. However, neither PIC codes nor existing two-fluid schemes can simulate X-pinches, due to the broad range of densities which have thus far made such a simulation computationally prohibitive. In both laser-plasma interaction and Xpinch simulations, we have observed relativistic phenomena that PERSEUS could not previously model. This includes relativistic channeling of a laser into an over-dense deuterium gas (i.e. induced transparency), consistent with PIC simulation results, along with energetic electrons and ions following an X-pinch and likely accompanied by strong X-ray emission, consistent with experimental observations of energetic X-rays. This proposal includes our latest simulation results. We will improve computational efficiency with techniques that allow the use of a less refined numerical grid. This will enable extensions to three-dimensional geometries. We will improve modeling of laser-plasma interactions and X-pinches, including radiative transport processes, in order to improve comparisons with PIC simulations and experimental diagnostics. We will also model power loss through electrode surface plasmas in magnetically insulated transmission lines (MITLs). We will model relativistic astrophysical phenomena in both astrophysical and HED regimes, which could shed light on the validity of laboratory astrophysics for certain problems. These phenomena are currently modeled using PIC codes and existing relativistic two-fluid codes, neither of which can model the range of length scales of which relativistic PERSEUS is capable. There is strong potential for this project to have a broad impact on both the astrophysical and laboratory plasma communities. In the laboratory community, our work is applicable to those concerned with laser-plasma interactions such as laser-driven fusion, and those in the dense Z pinch community concerned with X-pinches and electrode surface plasmas. An improved understanding of the mechanisms of hard (i.e. high-energy) X-ray generation will likely make important contributions toward the use of X-pinches for radiography through the harnessing or mitigation of hard X-rays, depending on the application. The modeling of electrode surface plasmas, including vacuum electron flow, will improve our understanding of power loss to various loads.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗