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At least 1,387 records · Page 77

Memory-Intensive Benchmarks: IRAM vs. Cache-Based Machines

The increasing gap between processor and memory performance has lead to new architectural models for memory-intensive applications. In this paper, we explore the performance of a set of memory-intensive benchmarks and use them to compare the performance of conventional cache-based microprocessors to a mixed logic and DRAM processor called VIRAM. The benchmarks are based on problem statements, rather than specific implementations, and in each case we explore the fundamental hardware requirements of the problem, as well as alternative algorithms and data structures that can help expose fine-grained parallelism or simplify memory access patterns. The benchmarks are characterized by their memory access patterns, their basic control structures, and the ratio of computation to memory operation.

Biswas, Rupak↗

An Efficient Scheme for Updating Sparse Cholesky Factors

Raghavan had earlier developed the software package DCSPACK which can be used for solving sparse linear systems where the coefficient matrix is symmetric and positive definite (this project was not funded by NASA but by agencies such as NSF). DSCPACK-S is the serial code and DSCPACK-P is a parallel implementation suitable for multiprocessors or networks-of-workstations with message passing using MCI. The main algorithm used is the Cholesky factorization of a sparse symmetric positive positive definite matrix A = LL(T). The code can also compute the factorization A = LDL(T). The complexity of the software arises from several factors relating to the sparsity of the matrix A. A sparse N x N matrix A has typically less that cN nonzeroes where c is a small constant. If the matrix were dense, it would have O(N2) nonzeroes. The most complicated part of such sparse Cholesky factorization relates to fill-in, i.e., zeroes in the original matrix that become nonzeroes in the factor L. An efficient implementation depends to a large extent on complex data structures and on techniques from graph theory to reduce, identify, and manage fill. DSCPACK is based on an efficient multifrontal implementation with fill-managing algorithms and implementation arising from earlier research by Raghavan and others. Sparse Cholesky factorization is typically a four step process: (1) ordering to compute a fill-reducing numbering, (2) symbolic factorization to determine the nonzero structure of L, (3) numeric factorization to compute L, and, (4) triangular solution to solve L(T)x = y and Ly = b. The first two steps are symbolic and are performed using the graph of the matrix. The numeric factorization step is of dominant cost and there are several schemes for improving performance by exploiting the nested and dense structure of groups of columns in the factor. The latter are aimed at better utilization of the cache-memory hierarchy on modem processors to prevent cache-misses and provide execution rates (operations/second) that are close to the peak rates for dense matrix computations. Currently, EPISCOPACY is being used in an application at NASA directed by J. Newman and M. James. We propose the implementation of efficient schemes for updating the LL(T) or LDL(T) factors computed in DSCPACK-S to meet the computational requirements of their project. A brief description is provided in the next section.

Raghavan, Padma↗

A Model Rotor in Axial Flight

A model rotor was mounted horizontally in the settling chamber of a wind tunnel to obtain performance and wake structure data under low climb conditions. The immediate wake of the rotor was carefully surveyed using 3-component particle image velocimetry to define the velocity and vortical content of the flow, and used in a subsequent study to validate a theory for the separate determination of induced and profile drag. Measurements were obtained for two collective pitch angles intended to render a predominately induced drag state and another with a marked increase in profile drag. A majority of the azimuthally directed vorticity in the wake was found to be concentrated in the tip vortices. However, adjacent layers of inboard vorticity with opposite sense were clearly present. At low collective, the close proximity of the tip vortex from the previous blade caused the wake from the most recent blade passage to be distorted. The deficit velocity component that was directed along the azimuth of the rotor blade was never more that 15 percent of the rotor tip speed, and except for the region of the tip vortex, appeared to have totally disappeared form the wake left by the previous blade.

McAlister, K. W.↗

The Livingstone Model of a Main Propulsion System

Livingstone is a discrete, propositional logic-based inference engine that has been used for diagnosis of physical systems. We present a component-based model of a Main Propulsion System (MPS) and say how it is used with Livingstone (L2) in order to implement a diagnostic system for integrated vehicle health management (IVHM) for the Propulsion IVHM Technology Experiment (PITEX). We start by discussing the process of conceptualizing such a model. We describe graphical tools that facilitated the generation of the model. The model is composed of components (which map onto physical components), connections between components and constraints. A component is specified by variables, with a set of discrete, qualitative values for each variable in its local nominal and failure modes. For each mode, the model specifies the component's behavior and transitions. We describe the MPS components' nominal and fault modes and associated Livingstone variables and data structures. Given this model, and observed external commands and observations from the system, Livingstone tracks the state of the MPS over discrete time-steps by choosing trajectories that are consistent with observations. We briefly discuss how the compiled model fits into the overall PITEX architecture. Finally we summarize our modeling experience, discuss advantages and disadvantages of our approach, and suggest enhancements to the modeling process.

Bajwa, Anupa↗

A Detailed Study of Two Optically-Selected, High-Redshift Clusters of Galaxies

We are obtaining detailed X-ray spectral and structural data for two distant, optically-selected clusters of galaxies which are known X-ray emitters, CL1324+3011 at z=0.76 and CL1604+4304 at z=0.90. These observations will allow us to place accurate constraints on the temperature, surface-brightness profile, and mass fraction of the intracluster medium in rich, optically-selected clusters at very high redshift. The two target clusters are the most well-studied systems at z greater than 0.7 in the optical and infrared regimes; therefore, with the addition of the XMM data, we plan to study the specifics of the relationship between the X-ray and optical properties and their implications for galaxy and cluster evolution.

Lubin, Lori M.↗

An Advanced Hierarchical Hybrid Environment for Reliability and Performance Modeling

The key issue we intended to address in our proposed research project was the ability to model and study logical and probabilistic aspects of large computer systems. In particular, we wanted to focus mostly on automatic solution algorithms based on a state-space exploration as their first step, in addition to the more traditional discrete-event simulation approaches commonly employed in industry. One explicitly-stated goal was to extend by several orders of magnitude the size of models that can be solved exactly, using a combination of techniques: 1) Efficient exploration and storage of the state space using new data structures that require an amount of memory sublinear in the number states; and 2) Exploitation of the existing symmetries in the matrices describing the system behavior using Kronecker operators. Not only we have been successful in achieving the above goals, but we exceeded them in many respects.

Ciardo, Gianfranco↗

Novel Route to Transition Metal Isothiocyanate Complexes Using Metal Powders and Thiourea

A new synthetic route to isothiocyanate-containing materials is presented. Eight isothiocyanate- 4-methylpyridine (y-picoline) compounds were prepared by refluxing metal powders (Mn, Fe, Co, Ni, and Cu) with thiourea in y-picoline. With the exception of compound 5,prepared with Co, the isothiocyanate ligand was generated in situ by the isomerization of thiourea to NH4+SCN- at reflux temperatures. The complexes were characterized by x-ray crystallography. Compounds 1,2, and 8 are the first isothiocyanate- 4-methylpyridine anionic compounds ever prepared and structurally characterized. Compounds 1 and 2 are isostructural with four equatorially bound isothiocyanate ligands and two axially bound y-picoline molecules. Compound 8 is a five-coordinate copper(II) molecule with a distorted square-pyramidal geometry. Coordinated picoline and two isothiocyanates form the basal plane and the remaining isothiocyanate is bound at the apex. Structural data are presented for all compounds.

Harris, Jerry D.↗

Multi-Image Registration for an Enhanced Vision System

An Enhanced Vision System (EVS) utilizing multi-sensor image fusion is currently under development at the NASA Langley Research Center. The EVS will provide enhanced images of the flight environment to assist pilots in poor visibility conditions. Multi-spectral images obtained from a short wave infrared (SWIR), a long wave infrared (LWIR), and a color visible band CCD camera, are enhanced and fused using the Retinex algorithm. The images from the different sensors do not have a uniform data structure: the three sensors not only operate at different wavelengths, but they also have different spatial resolutions, optical fields of view (FOV), and bore-sighting inaccuracies. Thus, in order to perform image fusion, the images must first be co-registered. Image registration is the task of aligning images taken at different times, from different sensors, or from different viewpoints, so that all corresponding points in the images match. In this paper, we present two methods for registering multiple multi-spectral images. The first method performs registration using sensor specifications to match the FOVs and resolutions directly through image resampling. In the second method, registration is obtained through geometric correction based on a spatial transformation defined by user selected control points and regression analysis.

Hines, Glenn↗

Cellerator: extending a computer algebra system to include biochemical arrows for signal transduction simulations

Cellerator describes single and multi-cellular signal transduction networks (STN) with a compact, optionally palette-driven, arrow-based notation to represent biochemical reactions and transcriptional activation. Multi-compartment systems are represented as graphs with STNs embedded in each node. Interactions include mass-action, enzymatic, allosteric and connectionist models. Reactions are translated into differential equations and can be solved numerically to generate predictive time courses or output as systems of equations that can be read by other programs. Cellerator simulations are fully extensible and portable to any operating system that supports Mathematica, and can be indefinitely nested within larger data structures to produce highly scaleable models.

Non-NASA Center↗

Velocity Fields of Axisymmetric Hydrogen-Air Counterflow Diffusion Flames from LDV, PIV, and Numerical Computation

Laminar fuel-air counterflow diffusion flames (CFDFs) were studied using axisymmetric convergent-nozzle and straight-tube opposed jet burners (OJBs). The subject diagnostics were used to probe a systematic set of H2/N2-air CFDFs over wide ranges of fuel input (22 to 100% Ha), and input axial strain rate (130 to 1700 Us) just upstream of the airside edge, for both plug-flow and parabolic input velocity profiles. Laser Doppler Velocimetry (LDV) was applied along the centerline of seeded air flows from a convergent nozzle OJB (7.2 mm i.d.), and Particle Imaging Velocimetry (PIV) was applied on the entire airside of both nozzle and tube OJBs (7 and 5 mm i.d.) to characterize global velocity structure. Data are compared to numerical results from a one-dimensional (1-D) CFDF code based on a stream function solution for a potential flow input boundary condition. Axial strain rate inputs at the airside edge of nozzle-OJB flows, using LDV and PIV, were consistent with 1-D impingement theory, and supported earlier diagnostic studies. The LDV results also characterized a heat-release hump. Radial strain rates in the flame substantially exceeded 1-D numerical predictions. Whereas the 1-D model closely predicted the max I min axial velocity ratio in the hot layer, it overpredicted its thickness. The results also support previously measured effects of plug-flow and parabolic input strain rates on CFDF extinction limits. Finally, the submillimeter-scale LDV and PIV diagnostics were tested under severe conditions, which reinforced their use with subcentimeter OJB tools to assess effects of aerodynamic strain, and fueVair composition, on laminar CFDF properties, including extinction.

Pellett, Gerald L.↗

Scalability of Parallel Spatial Direct Numerical Simulations on Intel Hypercube and IBM SP1 and SP2

The implementation and performance of a parallel spatial direct numerical simulation (PSDNS) approach on the Intel iPSC/860 hypercube and IBM SP1 and SP2 parallel computers is documented. Spatially evolving disturbances associated with the laminar-to-turbulent transition in boundary-layer flows are computed with the PSDNS code. The feasibility of using the PSDNS to perform transition studies on these computers is examined. The results indicate that PSDNS approach can effectively be parallelized on a distributed-memory parallel machine by remapping the distributed data structure during the course of the calculation. Scalability information is provided to estimate computational costs to match the actual costs relative to changes in the number of grid points. By increasing the number of processors, slower than linear speedups are achieved with optimized (machine-dependent library) routines. This slower than linear speedup results because the computational cost is dominated by FFT routine, which yields less than ideal speedups. By using appropriate compile options and optimized library routines on the SP1, the serial code achieves 52-56 M ops on a single node of the SP1 (45 percent of theoretical peak performance). The actual performance of the PSDNS code on the SP1 is evaluated with a "real world" simulation that consists of 1.7 million grid points. One time step of this simulation is calculated on eight nodes of the SP1 in the same time as required by a Cray Y/MP supercomputer. For the same simulation, 32-nodes of the SP1 and SP2 are required to reach the performance of a Cray C-90. A 32 node SP1 (SP2) configuration is 2.9 (4.6) times faster than a Cray Y/MP for this simulation, while the hypercube is roughly 2 times slower than the Y/MP for this application. KEY WORDS: Spatial direct numerical simulations; incompressible viscous flows; spectral methods; finite differences; parallel computing.

Joslin, Ronald D.↗

Mechanosensitive channels of Escherichia coli: the MscL gene, protein, and activities

Although mechanosensory responses are ubiquitous and diverse, the molecular bases of mechanosensation in most cases remain mysterious MscL, a mechanosensitive channel of large conductance of Escherichia coli and its bacterial homologues are the first and currently only channel molecules shown to directly sense mechanical stretch of the membrane. In response to the tension conveyed via the lipid bilayer, MscL increases its open probability by several orders of magnitude. In the present review we describe the identification, cloning, and first sets of biophysical and structural data on this simplest mechanosensory molecule. We discovered a 2.5-ns mechanosensitive conductance in giant E. coli spheroplasts. Using chromatographies to enrich the target and patch clamp to assay the channel activity in liposome-reconstituted fractions, we identified the MscL protein and cloned the mscL gene. MscL comprises 136 amino acid residues (15 kDa), with two highly hydrophobic regions, and resides in the inner membrane of the bacterium. PhoA-fusion experiments indicate that the protein spans the membrane twice with both termini in the cytoplasm. Spectroscopic techniques show that it is highly helical. Expression of MscL tandems and covalent cross-linking suggest that the active channel complex is a homo-hexamer. We have identified several residues, which when deleted or substituted, affect channel kinetics or mechanosensitivity. Although unique when discovered, highly conserved MscL homologues in both gram-negative and gram-positive bacteria have been found, suggesting their ubiquitous importance among bacteria.

Non-NASA Center↗

Project Integration Architecture: Distributed Lock Management, Deadlock Detection, and Set Iteration

The migration of the Project Integration Architecture (PIA) to the distributed object environment of the Common Object Request Broker Architecture (CORBA) brings with it the nearly unavoidable requirements of multiaccessor, asynchronous operations. In order to maintain the integrity of data structures in such an environment, it is necessary to provide a locking mechanism capable of protecting the complex operations typical of the PIA architecture. This paper reports on the implementation of a locking mechanism to treat that need. Additionally, the ancillary features necessary to make the distributed lock mechanism work are discussed.

Jones, William Henry↗

Leveraging Existing Mission Tools in a Re-Usable, Component-Based Software Environment

Emerging methods in component-based software development offer significant advantages but may seem incompatible with existing mission operations applications. In this paper we relate our positive experiences integrating existing mission applications into component-based tools we are delivering to three missions. In most operations environments, a number of software applications have been integrated together to form the mission operations software. In contrast, with component-based software development chunks of related functionality and data structures, referred to as components, can be individually delivered, integrated and re-used. With the advent of powerful tools for managing component-based development, complex software systems can potentially see significant benefits in ease of integration, testability and reusability from these techniques. These benefits motivate us to ask how component-based development techniques can be relevant in a mission operations environment, where there is significant investment in software tools that are not component-based and may not be written in languages for which component-based tools even exist. Trusted and complex software tools for sequencing, validation, navigation, and other vital functions cannot simply be re-written or abandoned in order to gain the advantages offered by emerging component-based software techniques. Thus some middle ground must be found. We have faced exactly this issue, and have found several solutions. Ensemble is an open platform for development, integration, and deployment of mission operations software that we are developing. Ensemble itself is an extension of an open source, component-based software development platform called Eclipse. Due to the advantages of component-based development, we have been able to vary rapidly develop mission operations tools for three surface missions by mixing and matching from a common set of mission operation components. We have also had to determine how to integrate existing mission applications for sequence development, sequence validation, and high level activity planning, and other functions into a component-based environment. For each of these, we used a somewhat different technique based upon the structure and usage of the existing application.

Greene, Kevin↗

Image and information management system

A system and methods through which pictorial views of an object's configuration, arranged in a hierarchical fashion, are navigated by a person to establish a visual context within the configuration. The visual context is automatically translated by the system into a set of search parameters driving retrieval of structured data and content (images, documents, multimedia, etc.) associated with the specific context. The system places hot spots, or actionable regions, on various portions of the pictorials representing the object. When a user interacts with an actionable region, a more detailed pictorial from the hierarchy is presented representing that portion of the object, along with real-time feedback in the form of a popup pane containing information about that region, and counts-by-type reflecting the number of items that are available within the system associated with the specific context and search filters established at that point in time.

Robertson, Tina L.↗

Flow Solver for Incompressible Rectangular Domains

This is an extension of the Flow Solver for Incompressible 2-D Drive Cavity software described in the preceding article. It solves the Navier-Stokes equations for incompressible flow using finite differencing on a uniform, staggered grid. There is a runtime choice of either central differencing or modified upwinding for the convective term. The domain must be rectangular, but may have a rectangular walled region within it. Currently, the position of the interior region and exterior boundary conditions are changed by modifying parameters in the code and recompiling. These features make it possible to solve a variety of classical fluid flow problems such as an L-shaped cavity, channel flow, or wake flow past a square cylinder. The code uses fourth-order Runge-Kutta time-stepping and overall second-order spatial accuracy. This software permits the walled region to be positioned such that flow past a square cylinder, an L-shaped cavity, and the flow over a back-facing step can all be solved by reconfiguration. Also, this extension has an automatic detection of periodicity, as well as use of specialized data structure for ease of configuring domain decomposition and computing convergence in overlap regions.

Kalb, Virginia L.↗

Improved CLARAty Functional-Layer/Decision-Layer Interface

Improved interface software for communication between the CLARAty Decision and Functional layers has been developed. [The Coupled Layer Architecture for Robotics Autonomy (CLARAty) was described in Coupled-Layer Robotics Architecture for Autonomy (NPO-21218), NASA Tech Briefs, Vol. 26, No. 12 (December 2002), page 48. To recapitulate: the CLARAty architecture was developed to improve the modularity of robotic software while tightening coupling between planning/execution and basic control subsystems. Whereas prior robotic software architectures typically contained three layers, the CLARAty contains two layers: a decision layer (DL) and a functional layer (FL).] Types of communication supported by the present software include sending commands from DL modules to FL modules and sending data updates from FL modules to DL modules. The present software supplants prior interface software that had little error-checking capability, supported data parameters in string form only, supported commanding at only one level of the FL, and supported only limited updates of the state of the robot. The present software offers strong error checking, and supports complex data structures and commanding at multiple levels of the FL, and relative to the prior software, offers a much wider spectrum of state-update capabilities.

Estlin, Tara↗

Estimating Mixing Heights Using Microwave Temperature Profiler

A paper describes the Microwave Temperature Profiler (MTP) for making measurements of the planetary boundary layer thermal structure data necessary for air quality forecasting as the Mixing Layer (ML) height determines the volume in which daytime pollution is primarily concentrated. This is the first time that an airborne temperature profiler has been used to measure the mixing layer height. Normally, this is done using a radar wind profiler, which is both noisy and large. The MTP was deployed during the Texas 2000 Air Quality Study (TexAQS-2000). An objective technique was developed and tested for estimating the ML height from the MTP vertical temperature profiles. In order to calibrate the technique and evaluate the usefulness of this approach, estimates from a variety of measurements during the TexAQS-2000 were compared. Estimates of ML height were used from radiosondes, radar wind profilers, an aerosol backscatter lidar, and in-situ aircraft measurements in addition to those from the MTP.

Nielson-Gammon, John↗