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At least 145 records · Page 8

Mycobacterium Phage Butters-Encoded Proteins Contribute to Host Defense against Viral Attack [plus supplemental information]

A diverse set of prophage-mediated mechanisms protecting bacterial hosts from infection has been recently uncovered within cluster N mycobacteriophages isolated on the host, Mycobacterium smegmatis mc 2 155. In that context, we unveil a novel defense mechanism in cluster N prophage Butters. By using bioinformatics analyses, phage plating efficiency experiments, microscopy, and immunoprecipitation assays, we show that Butters genes located in the central region of the genome play a key role in the defense against heterotypic viral attack. Our study suggests that a two-component system, articulated by interactions between protein products of genes 30 and 31, confers defense against heterotypic phage infection by PurpleHaze (cluster A/subcluster A3) or Alma (cluster A/subcluster A9) but is insufficient to confer defense against attack by the heterotypic phage Island3 (cluster I/subcluster I1). Therefore, based on heterotypic phage plating efficiencies on the Butters lysogen, additional prophage genes required for defense are implicated and further show specificity of prophage-encoded defense systems. IMPORTANCE: Many sequenced bacterial genomes, including those of pathogenic bacteria, contain prophages. Some prophages encode defense systems that protect their bacterial host against heterotypic viral attack. Understanding the mechanisms undergirding these defense systems is crucial to appreciate the scope of bacterial immunity against viral infections and will be critical for better implementation of phage therapy that would require evasion of these defenses. Furthermore, such knowledge of prophage-encoded defense mechanisms may be useful for developing novel genetic tools for engineering phage-resistant bacteria of industrial importance.

59 BASIC BIOLOGICAL SCIENCES↗

Mu2e otsdaq Documentation and Online Reconstruction Analytics

This report outlines the results of the DOE-funded SULI (Science Undergraduate Laboratory Internship) research completed over the summer 2024 on site at Fermilab. The project focused on the \textit{otsdaq} software responsible for data acquisition. The project included drafting updated documentation for new users including new procedures relevant for the Alma-Linux 9 operating system update, and the UPS package managing system replacement with spack (scientific software package manager). A new \textit{art} module (ReadTriggerCounts) to track trigger rates was created, with compatibility to be displayed via a Grafana server. The author also assisted in calorimeter cable installation in the detector hall.

Saarinen, Talia↗

First Resolved Scattered-light Images of Four Debris Disks in Scorpius-Centaurus with the Gemini Planet Imager

In this work, we present the first spatially resolved scattered-light images of four debris disks around members of the Scorpius-Centaurus (Sco-Cen) OB association with high-contrast imaging and polarimetry using the Gemini Planet Imager (GPI). All four disks are resolved for the first time in polarized light, and one disk is also detected in total intensity. The three disks imaged around HD 111161, HD 143675, and HD 145560 are symmetric in both morphology and brightness distribution. The three systems span a range of inclinations and radial extents. The disk imaged around HD 98363 shows indications of asymmetries in morphology and brightness distribution, with some structural similarities to the HD 106906 planet–disk system. Uniquely, HD 98363 has a wide comoving stellar companion, Wray 15-788, with a recently resolved disk with very different morphological properties. HD 98363 A/B is the first binary debris disk system with two spatially resolved disks. All four targets have been observed with ALMA, and their continuum fluxes range from one nondetection to one of the brightest disks in the region. With the new results, a total of 15 A/F stars in Sco-Cen have resolved scattered-light debris disks, and approximately half of these systems exhibit some form of asymmetry. Combining the GPI disk structure results with information from the literature on millimeter fluxes and imaged planets reveals a diversity of disk properties in this young population. Overall, the four newly resolved disks contribute to the census of disk structures measured around A/F stars at this important stage in the development of planetary systems.

79 ASTRONOMY AND ASTROPHYSICS↗

Probing UV-sensitive Pathways for CN and HCN Formation in Protoplanetary Disks with the Hubble Space Telescope

The UV radiation field is a critical regulator of gas-phase chemistry in surface layers of disks around young stars. In an effort to understand the relationship between photocatalyzing UV radiation fields and gas emission observed at infrared and submillimeter wavelengths, we present an analysis of new and archival Hubble Space Telescope (HST), Spitzer, ALMA, IRAM, and SMA data for five targets in the Lupus cloud complex and 14 systems in Taurus-Auriga. The HST spectra were used to measure Lyα and far-UV (FUV) continuum fluxes reaching the disk surface, which are responsible for dissociating relevant molecular species (e.g., HCN, N{sub 2}). Semi-forbidden C ii] λ2325 and UV-fluorescent H{sub 2} emission were also measured to constrain inner disk populations of C{sup +} and vibrationally excited H{sub 2}. We find a significant positive correlation between 14 μm HCN emission and fluxes from the FUV continuum and C ii] λ2325, consistent with model predictions requiring N{sub 2} photodissociation and carbon ionization to trigger the main CN/HCN formation pathways. We also report significant negative correlations between submillimeter CN emission and both C ii] and FUV continuum fluxes, implying that CN is also more readily dissociated in disks with stronger FUV irradiation. No clear relationships are detected between either CN or HCN and Lyα or UV-H{sub 2} emission. This is attributed to the spatial stratification of the various molecular species, which span several vertical layers and radii across the inner and outer disk. We expect that future observations with the James Webb Space Telescope will build on this work by enabling more sensitive IR surveys than were possible with Spitzer.

79 ASTRONOMY AND ASTROPHYSICS↗

Applying the Tremaine–Weinberg Method to Nearby Galaxies: Stellar-mass-based Pattern Speeds and Comparisons with ISM Kinematics

We apply the Tremaine–Weinberg method to 19 nearby galaxies using stellar mass surface densities and velocities derived from the PHANGS-MUSE survey, to calculate (primarily bar) pattern speeds (Ω{sub P}). After quality checks, we find that around half (10) of these stellar-mass-based measurements are reliable. For those galaxies, we find good agreement between our results and previously published pattern speeds, and we use rotation curves to calculate major resonance locations (corotation radii and Lindblad resonances). We also compare these stellar-mass-derived pattern speeds with Hα (from MUSE) and CO(J = 2 − 1) emission from the PHANGS-ALMA survey. We find that in the case of these clumpy interstellar medium (ISM) tracers, this method erroneously gives a signal that is simply the angular frequency at a representative radius set by the distribution of these clumps (Ω{sub clump}), and that this Ω{sub clump} is significantly different from Ω{sub P} (∼20% in the case of Hα, and ∼50% in the case of CO). Thus, we conclude that it is inadvisable to use “pattern speeds” derived from ISM kinematics. Finally, we compare our derived pattern speeds and corotation radii, along with bar properties, to the global parameters of these galaxies. Consistent with previous studies, we find that galaxies with a later Hubble type have a larger ratio of corotation radius to bar length, more molecular-gas-rich galaxies have higher Ω{sub P}, and more bulge-dominated galaxies have lower Ω{sub P}. Unlike earlier works, however, there are no clear trends between the bar strength and Ω{sub P}, nor between the total stellar mass surface density and the pattern speed.

74 ATOMIC AND MOLECULAR PHYSICS↗

The Chemical Inventory of the Planet-hosting Disk PDS 70

As host to two accreting planets, PDS 70 provides a unique opportunity to probe the chemical complexity of atmosphere-forming material. We present ALMA Band 6 observations of the PDS 70 disk and report the first chemical inventory of the system. With a spatial resolution of 0."4–0."5 (~50 au), 12 species are detected, including CO isotopologs and formaldehyde, small hydrocarbons, HCN and HCO{sup +} isotopologs, and S-bearing molecules. SO and CH{sub 3}OH are not detected. All lines show a large cavity at the center of the disk, indicative of the deep gap carved by the massive planets. The radial profiles of the line emission are compared to the (sub)millimeter continuum and infrared scattered light intensity profiles. Different molecular transitions peak at different radii, revealing the complex interplay between density, temperature, and chemistry in setting molecular abundances. Column densities and optical depth profiles are derived for all detected molecules, and upper limits obtained for the nondetections. Excitation temperature is obtained for H{sub 2}CO. Deuteration and nitrogen fractionation profiles from the hydrocyanide lines show radially increasing fractionation levels. Comparison of the disk chemical inventory to grids of chemical models from the literature strongly suggests a disk molecular layer hosting a carbon-to-oxygen ratio C/O > 1, thus providing for the first time compelling evidence of planets actively accreting high C/O ratio gas at present time.

74 ATOMIC AND MOLECULAR PHYSICS↗

An Asymmetric Dust Ring around a Very Low Mass Star ZZ Tau IRS

We present Atacama Large Millimeter/submillimeter Array (ALMA) gas and dust observations at band 7 (339 GHz: 0.89 mm) of the protoplanetary disk around a very low mass star ZZ Tau IRS with a spatial resolution of 025. The {sup 12}CO J = 3 → 2 position–velocity diagram suggests a dynamical mass of ZZ Tau IRS of ∼0.1–0.3 M {sub ☉}. The disk has a total flux density of 273.9 mJy, corresponding to an estimated mass of 24–50 M {sub ⊕} in dust. The dust emission map shows a ring at r = 58 au and an azimuthal asymmetry at r = 45 au with a position angle of 135°. The properties of the asymmetry, including radial width, aspect ratio, contrast, and contribution to the total flux, were found to be similar to the asymmetries around intermediate mass stars (∼2 M {sub ☉}) such as MWC 758 and IRS 48. This implies that the asymmetry in the ZZ Tau IRS disk shares a similar origin with others, despite the star being ∼10 times less massive. Our observations also suggest that the inner and outer parts of the disk may be misaligned. Overall, the ZZ Tau IRS disk shows evidence of giant planet formation on a ∼10 au scale at a few megayears. If confirmed, it will challenge existing core accretion models in which such planets have been predicted to be extremely hard to form around very low mass stars.

74 ATOMIC AND MOLECULAR PHYSICS↗

Meso-scale Instability Triggered by Dust Feedback in Dusty Rings: Origin and Observational Implications

High spatial resolution observations of protoplanetary disks by ALMA have revealed many substructures that are providing interesting constraints on disk physics as well as dust dynamics, both of which are essential for understanding planet formation. We carry out high-resolution, 2D global hydrodynamic simulations, including the effects of dust feedback, to study the stability of dusty rings. When the ring edges are relatively sharp and the dust surface density becomes comparable to the gas surface density, we find that dust feedback enhances the radial gradients of both the azimuthal velocity profile and the potential vorticity profile at the ring edges. This eventually leads to instabilities on meso-scales (spatial scales of several disk scale heights), causing dusty rings to be populated with many compact regions with highly concentrated dust densities. We also produce synthetic dust emission images using our simulation results and discuss the comparison between simulations and observations.

79 ASTRONOMY AND ASTROPHYSICS↗

The ALMaQUEST Survey. VII. Star Formation Scaling Relations of Green Valley Galaxies

We utilize the ALMA-MaNGA QUEnch and STar formation (ALMaQUEST) survey to investigate the kpc-scale scaling relations, presented as the resolved star-forming MS (rSFMS: Σ SFR versus Σ * ), the resolved Schmidt–Kennicutt relation (rSK: Σ SFR versus ${{\rm{\Sigma }}}_{{{\rm{H}}}_{2}}$), and the resolved molecular gas MS (rMGMS: ${{\rm{\Sigma }}}_{{{\rm{H}}}_{2}}$ versus Σ * ), for 11,478 star-forming and 1414 retired spaxels (oversampled by a factor of ~20) located in 22 GV and 12 MS galaxies. For a given galaxy type (MS or GV), the retired spaxels are found to be offset from the sequences formed by the star-forming spaxels on the rSFMS, rSK, and rMGMS planes, toward lower absolute values of sSFR, SFE, and ${f}_{{{\rm{H}}}_{2}}$ by ~1.1, 0.6, and 0.5 dex. The scaling relations for GV galaxies are found to be distinct from that of the MS galaxies, even if the analyses are restricted to the star-forming spaxels only. It is found that, for star-forming spaxels, sSFR, SFE, and ${f}_{{{\rm{H}}}_{2}}$ in GV galaxies are reduced by ~0.36, 0.14, and 0.21 dex, respectively, compared to those in MS galaxies. Therefore, the suppressed sSFR/SFE/f gas in GV galaxies is associated with not only an increased proportion of retired regions in GV galaxies but also a depletion of these quantities in star-forming regions. Finally, the reduction of SFE and ${f}_{{{\rm{H}}}_{2}}$ in GV galaxies relative to MS galaxies is seen in both bulge and disk regions (albeit with larger uncertainties), suggesting that, statistically, quenching in the GV population may persist from the inner to the outer regions.

79 ASTRONOMY AND ASTROPHYSICS↗

SDSS-IV MaNGA: Understanding Ionized Gas Turbulence Using Integral Field Spectroscopy of 4500 Star-forming Disk Galaxies

The Sloan Digital Sky Survey MaNGA program has now obtained integral field spectroscopy for over 10,000 galaxies in the nearby universe. We use the final MaNGA data release DR17 to study the correlation between ionized gas velocity dispersion and galactic star formation rate, finding a tight correlation in which σ Hα from galactic H ιι regions increases significantly from ~18–30 km s –1 , broadly in keeping with previous studies. In contrast, σ Hα from diffuse ionized gas increases more rapidly from 20–60 km s –1 . Using the statistical power of MaNGA, we investigate these correlations in greater detail using multiple emission lines and determine that the observed correlation of σ Hα with local star formation rate surface density is driven primarily by the global relation of increasing velocity dispersion at higher total star formation rate, as are apparent correlations with stellar mass. Assuming H ιι region models consistent with our finding that σ [O III] < σ Hα < σ [O I] , we estimate the velocity dispersion of the molecular gas in which the individual H ιι regions are embedded, finding values σ Mol = 5–30 km s –1 consistent with ALMA observations in a similar mass range. Finally, we use variations in the relation with inclination and disk azimuthal angle to constrain the velocity dispersion ellipsoid of the ionized gas σ z /σ r = 0.84 ± 0.03 and σ Φ /σ r = 0.91 ± 0.03, similar to that of young stars in the Galactic disk. Our results are most consistent with the theoretical models in which turbulence in modern galactic disks is driven primarily by star formation feedback.

79 ASTRONOMY AND ASTROPHYSICS↗

A Molecular Gas Ring Hidden in the Sombrero Galaxy

We present Herschel, ALMA, and MUSE observations of the molecular ring of Messier 104, also known as the Sombrero galaxy. These previously unpublished archival data shed new light on the content of the interstellar medium of M104. In particular, molecular hydrogen measured by CO emission and dust measured by far-infrared light are uniformly distributed along the ring. The ionized gas revealed by Hα and [C II] emission is distributed in knots along the ring. Despite being classified as an SAa galaxy, M104 displays features typical of early-type galaxies. We therefore compared its [C II] and dust emission to a sample of early-type galaxies observed with Herschel and SOFIA. The [C II]/FIR ratio of M104 is much lower than that of typical star-forming galaxies and is instead much more similar to that of early-type galaxies. By classifying regions using optical emission line diagnostics, we also find that regions classified as H II lie closer to star-forming galaxies in the [C II]/FIR diagram than those classified as low-ionization emission regions. The good match between [C II] and Hα emission, in conjunction with the lack of correlation between CO emission and star formation, suggests that there is very limited active star formation along the ring and that most of the [C II] emission is from ionized and neutral atomic gas rather than molecular gas. From the total intensity of the CO line, we estimate a molecular hydrogen mass of 0.9 × 10 9 M ⊙ , a value intermediate between those of early-type galaxies and the content of the molecular ring of our galaxy.

79 ASTRONOMY AND ASTROPHYSICS↗

LoTSS Jellyfish Galaxies. IV. Enhanced Star Formation on the Leading Half of Cluster Galaxies and Gas Compression in IC3949

With Mapping Nearby Galaxies at APO integral field spectroscopy, we present a resolved analysis of star formation for 29 jellyfish galaxies in nearby clusters, identified from radio continuum imaging taken by the Low Frequency Array. Simulations predict enhanced star formation on the "leading half" (LH) of galaxies undergoing ram pressure stripping, and in this work we report observational evidence for this elevated star formation. The dividing line (through the galaxy center) that maximizes this star formation enhancement is systematically tied to the observed direction of the ram-pressure-stripped tail, suggesting a physical connection between ram pressure and this star formation enhancement. We also present a case study on the distribution of molecular gas in one jellyfish galaxy from our sample, IC3949, using Atacama Large Millimeter/submillimeter Array CO J = 1 – 0, HCN J = 1 – 0, and HCO + J = 1 – 0 observations from the ALMA MaNGA Quenching and Star Formation Survey. The H2 depletion time (as traced by CO) in IC3949 ranges from ~1 Gyr in the outskirts of the molecular gas disk to ~11 Gyr near the galaxy center. IC3949 shows a clear region of enhanced star formation on the LH of the galaxy where the average depletion time is ~2.7 Gyr, in line with the median value for the galaxy on the whole. Dense gas tracers, HCN and HCO + , are only detected at the galaxy center and on the LH of IC3949. Our results favor a scenario in which ram pressure compresses the interstellar medium, promoting the formation of molecular gas that in turn fuels a localized increase of star formation.

79 ASTRONOMY AND ASTROPHYSICS↗

``Beads on a String" Star Formation Tied to one of the most Powerful AGN Outbursts Observed in a Cool Core Galaxy Cluster

With two central galaxies engaged in a major merger and a remarkable chain of 19 young stellar superclusters wound around them in projection, the galaxy cluster SDSS J1531+3414 ($z=0.335$) offers an excellent laboratory to study the interplay between mergers, AGN feedback, and star formation. New Chandra X-ray imaging reveals rapidly cooling hot ($T\sim 10^6$ K) intracluster gas, with two "wings" forming a concave density discontinuity near the edge of the cool core. LOFAR $144$ MHz observations uncover diffuse radio emission strikingly aligned with the "wings," suggesting that the "wings" are actually the opening to a giant X-ray supercavity. The steep radio emission is likely an ancient relic of one of the most energetic AGN outbursts observed, with $4pV > 10^{61}$ erg. To the north of the supercavity, GMOS detects warm ($T\sim 10^4$ K) ionized gas that enshrouds the stellar superclusters but is redshifted up to $+ 800$ km s$^{-1}$ with respect to the southern central galaxy. ALMA detects a similarly redshifted $\sim 10^{10}$ M$_\odot$ reservoir of cold ($T\sim 10^2$ K) molecular gas, but it is offset from the young stars by $\sim 1{-}3$ kpc. We propose that the multiphase gas originated from low-entropy gas entrained by the X-ray supercavity, attribute the offset between the young stars and the molecular gas to turbulent intracluster gas motions, and suggest that tidal interactions stimulated the "beads on a string" star formation morphology.

79 ASTRONOMY AND ASTROPHYSICS↗

Comparisons Between Resolved Star Formation Rate and Gas Tracers in the Strongly Lensed Galaxy SDSS J0901+1814 at Cosmic Noon

We report new radio observations of SDSS J090122.37+181432.3, a strongly lensed star-forming galaxy at $z=2.26$. We image 1.4 GHz (L-band) and 3 GHz (S-band) continuum using the VLA and 1.2 mm (band 6) continuum with ALMA, in addition to the CO(7-6) and CI(${\rm ^3P_2\rightarrow ^3\!P_1}$) lines, all at $\lesssim1.^{\prime\prime}7$ resolution. Based on the VLA integrated flux densities, we decompose the radio spectrum into its free-free (FF) and non-thermal components. The infrared-radio correlation (IRRC) parameter $q_{\rm TIR}=2.65_{-0.31}^{+0.24}$ is consistent with expectations for star forming galaxies. We obtain radio continuum-derived SFRs that are free of dust extinction, finding $\rm {620}_{-220}^{+280}\,M_\odot\,yr^{-1}$, $\rm {230}_{-160}^{+570}\,M_\odot\,yr^{-1}$, and $\rm {280}_{-120}^{+460}\,M_\odot\,yr^{-1}$ from the FF emission, non-thermal emission, and when accounting for both emission processes, respectively, in agreement with previous results. We estimate the gas mass from the CI(${\rm ^3P_2\rightarrow ^3\!P_1}$) line as $M_{\rm gas}=(1.2\pm0.2)\times10^{11}\,M_\odot$, which is consistent with prior CO(1-0)-derived gas masses. Using our new IR and radio continuum data to map the SFR, we assess the dependence of the Schmidt-Kennicutt relation on choices of SFR and gas tracer for $\sim{\rm kpc}$ scales. The different SFR tracers yield different slopes, with the IR being the steepest, potentially due to highly obscured star formation in J0901. The radio continuum maps have the lowest slopes and overall fidelity for mapping the SFR, despite producing consistent total SFRs. We also find that the Schmidt-Kennicutt relation slope is flattest when using CO(7-6) or CI(${\rm ^3P_2\rightarrow ^3\!P_1}$) to trace gas mass, suggesting that those transitions are not suitable for tracing the bulk molecular gas in galaxies like J0901.

79 ASTRONOMY AND ASTROPHYSICS↗

Radioastronomical measurement of absorption

Diurnal and seasonal absorption curves measured by a radio astronomical method at Alma-Ata during the IQSY (1964-1965) are submitted. The apparatus is described. The dependence of absorption on solar flares is also indicated.

Yakovets, T. K.↗

Study of cosmic ray motion in cosmic space near the earth

Data are presented on experimental installations developed in the cosmic ray variations laboratory in Kazgu (Alma-Ata). Various experiments on modelling the interaction of plasma with the geomagnetic field as well as the plasma distribution in quiet and disturbed fields are described. The characteristics of the meson supertelescope using scintillators (effective area, 10 sq m) for vertical alignments designed to study microvariations of the cosmic rays and their interrelation with magnetospheric fluctuations and the study of solar wind parameters are given.

Budilov, V. K.↗

The difference in the energy spectra of galactic cosmic rays at the minima of the 19th and 20th solar activity cycles

The absorption curves of the cosmic ray charged component for solar minima in 1965 and 1975 to 1977 are analyzed on the basis of daily stratospheric measurements in Murmansk, Moscow, Alma-Ata and Mirny (Antarctic). Two distinct features in the energy spectra of galactic cosmic rays are revealed during these periods. At the 20th solar activity minimum there was the additional short range component of cosmic rays. Additional fluxes in the stratosphere at high latitudes caused by this component are probably protons and He nuclei with the energy 100 to 500 MeV/n. The fluxes are estimates as Approx. 300 sq m/s/sr. At the minimum in 1975 to 1977 the proton intensity in the energy range 1 to 15 GeV is 10 to 15% lower than that in the 1965 solar activity minimum.

Svirzhevskaya, A. K.↗

The Mid and Far IR Universe and Facilities To See It

Although half the luminosity of the universe appears in the band from 20-450 $\mu$m, almost nothing is known about the sources of this radiation. Moreover, many molecules, atoms, and ions of astrophysical interest have some of their strongest lines in this wavelength range. Now Infrared Astronomy Satellite (IRAS) and ISO have flown, Space Infrared Telescope Facility (SIRTF) is nearly ready, SOFIA is under construction, and NGST, ALMA, Herschel, Planck, and a dozen 8 m and a 25 m ground-based visible/near IR telescopes could all be operational by the end of decade. Nevertheless, the mid and far IR region will still not have telescopes that are comparable to neighboring bands in energy sensitivity or angular resolution, despite these many advances. What scientific questions will still be open, and what instrumentation will be required? We anticipate that cold filled-aperture telescopes operating out to 100 $\mu$m and cold imaging interferometers, operating out to about 450 $\mu$m in space could be very powerful, using direct detection rather than heterodyne systems. I will give a brief overview of the scientific questions that may still be open, the main factors governing the choice of equipment, and the technological developments that would be required to actually build and use these new facilities.

Mather, John C.↗