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All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Characterizing the vertical structure of forests in the Brazilian Amazon

Little is known about the structure of tropical forests despite its critical role in the provisioning of ecosystem services. Here we assess the vertical structure of forests in the Brazilian Amazon with a large-scale airborne LiDAR dataset. We show that fire has greater impact in the lowest forest strata, differently from selective logging and windthrow. We also find that secondary forests quickly recover or even exceed reference areas at the 1-10 m height stratum but that full recovery for the 20-30 m height stratum has not been achieved even after 35 years. Our modeling results suggest that proximity to roads, elevation, precipitation, soil pH, and proportion of sand in the soil are the most important predictors of forest structure. Finally, we identify 5 forest structural types (FSTs) and use them to visualize the spatial distribution of forest structure. This study provides important information for forest monitoring, management, and conservation.

Biogeography↗
DOE OSTI2024

Functional insights of novel Bathyarchaeia reveal metabolic versatility in their role in peatlands of the Peruvian Amazon

ABSTRACT The decomposition of soil organic carbon within tropical peatlands is influenced by the functional composition of the microbial community. In this study, building upon our previous work, we recovered a total of 28 metagenome-assembled genomes (MAGs) classified as Bathyarchaeia from the tropical peatlands of the Pastaza-Marañón Foreland Basin (PMFB) in the Amazon. Using phylogenomic analyses, we identified nine genus-level clades to have representatives from the PMFB, with four forming a putative novel family (“CandidatusPaludivitaceae”) endemic to peatlands. We focus on theCa. Paludivitaceae MAGs due to the novelty of this group and the limited understanding of their role within tropical peatlands. Functional analysis of these MAGs reveals that this putative family comprises facultative anaerobes, possessing the genetic potential for oxygen, sulfide, or nitrogen oxidation. This metabolic versatility can be coupled to the fermentation of acetoin, propanol, or proline. The other clades outsideCa. Paludivitaceae are putatively capable of acetogenesis andde novoamino acid biosynthesis and encode a high amount of Fe 3+ transporters. Crucially, theCa. Paludivitaceae are predicted to be carboxydotrophic, capable of utilizing CO for energy generation or biomass production. Through this metabolism, they could detoxify the environment from CO, a byproduct of methanogenesis, or produce methanogenic substrates like CO 2 and H 2 . Overall, our results show the complex metabolism and various lineages of Bathyarchaeia within tropical peatlands pointing to the need to further evaluate their role in these ecosystems. IMPORTANCE With the expansion of theCandidatusPaludivitaceae family by the assembly of 28 new metagenome assembled genomes, this study provides novel insights into their metabolic diversity and ecological significance in peatland ecosystems. From a comprehensive phylogenic and functional analysis, we have elucidated their putative unique facultative anaerobic capabilities and CO detoxification potential. This research highlights their crucial role in carbon cycling and greenhouse gas regulation. These findings are essential for resolving the microbial processes affecting peat soil stability, offering new perspectives on the ecological roles of previously underexplored and underrepresented archaeal populations.

Microbiology↗
DOE OSTI2025

Hot Droughts and Forest Tree Dynamics in the Amazon - Statistical Models, Scripts, Data, and Outputs

This package contains data, outputs, equations, and R scripts for analyses for manuscript entitled "Hot droughts in the Amazon: A window to a future hypertropical climate" by J. Chambers et al., in particular it contains statistical models and analyses for the INPA BIONTE tree mortality study. The Models folder contains details for all statistical models in PDF files. The Scripts folder contains the R scripts for Bayesian Hierarchical Models (two text files) and SEMs (one text file) are separate and reasonably annotated. All data associated with these scripts are in the data folder. The Data folder contains two of the three CSV files used for the analyses and are called by the R scripts. Two of them are part of published datasets (`BIONTE_mortality-rates.csv` from Lima et al. 2024, DOI:10.15486/ngt/1898910 and `SPEI.csv` from Pastorello et al. 2023 DOI:10.15486/ngt/1958257) and also provided in this package for convenience (please see the corresponding datasets for usage and citation terms). The third dataset (`BIONTE_gapfilled_wd.csv`) contains sensitive information and can be obtained by contacting the manuscript lead author. The Outputs folder contains the two output files that provide extra information about the analyses. The file `figuresFeb2025d.pdf` contains all the figures from the manuscript - captions are in the manuscript. The file `ChambersMS.pdf` contains primary results from Bayesian statistical models, regression analyses, and validation steps applied to the tree mortality data from the INPA experiments. The document includes visual summaries, model diagnostics, and leave-one-out (LOO) validation results. A breakdown of file contents can be found in the README file that is part of this package.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1980

Geological mapping in the Amazon Jungle: A challenge to side-looking radar

A brief outline of the physical environment and vegetation characteristics peculiar to the Amazon Jungle is given to provide the background for the discussion of energy target interaction models. Examples of radar images of the central part of the jungle are used to illustrate a common approach to geologic mapping in this environment. During the initial phase of interpretation, the interaction phenomenon is evaluated and textural and tonal characteristics of the radar image are observed. Field checking of selected areas is the next phase of a geologic mapping program. Reinterpretation of radar images and auxiliary data (aerial photographs, Landsat images, and field data) is the last phase of geologic mapping.

Correa, A. C.↗
NASA NTRS1981

Remote sensing in forestry: Application to the Amazon region

The utilization of satellite remote sensing in forestry is reviewed with emphasis on studies performed for the Brazilian Amazon Region. Timber identification, deforestation, and pasture degradation after deforestation are discussed.

Dejesusparada, N.↗
NASA NTRS1984

The Amazon and climate

The climatologies of cloudiness and precipitation for the Amazon are reviewed. The physical causes of observed features are explained. The question whether deforestation leads to a reduction in evapotranspiration into the atmosphere is examined, as well as the reduction in precipitation and its implication for the global climate. There are indications that for large scale clearing of tropical rain forests there would indeed be a reduction in rainfall, which would have global effects in terms of climate and weather.

Nobre, C. A.↗
NASA NTRS1985

Information for space radar designers: Required dynamic range vs resolution and antenna calibration using the Amazon rain forest

Calibration of the vertical pattern of the antennas for the SEASAT scatterometer was accomplished using the nearly-uniform radar return from the Amazon rain forest. A similar calibration will be attempted for the SIR-B antenna. Thick calibration is important to establish the radiometric calibration across the swath of the SIR-B, and the developed methodology will provide an important tool in the evaluation of future spaceborne imaging radars. This calibration was made by the very-wide-beam SEASAT scatterometer antennas because at 14.65 GHz the scattering coefficient of the rain forest is almost independent of angle of incidence. It is expected that the variation in scattering coefficient for the rain forest across the relatively narrow vertical beam of the SIR-B will be very small; even at L band the forest should be essentially impenetrable for radar signals, the volume scatter from the treetops will predominate as at higher frequencies. The basic research elements include: (1) examination of SIR-B images over the rain forest to establish the variability of the scattering coefficient at finer resolutions than that of the SEASAT scatterometer; (2) analysis of the variability of SIR-B data detected prior to processing for either azimuth compression or; possibly, range compression so that averages over relatively large footprints can be used; (3) processing of data of the form of (2) using algorithms that can recover the vertical pattern of the antenna.

Moore, R. K.↗
NASA NTRS1985

Transient convection over the Amazon-Bolivia region and the dynamics of drought over Northeast Brazil

A two layer, nonlinear, equatorial beta-plane model, in p-coordinates is used to study the atmospheric response to a large scale prescribed heat source varying in time. The heat source is meant to represent a convective burst with total duration of approximately 48 hours over the Amazon/Bolivia region. The boundary conditions used are meridional velocity zero at 60 deg S, omega w = 0 at the top and zero geometric velocity at the lower boundary. Sensitivity study was done which includes initial state at rest, compared with realistic initial flow. The scale of the heat source is 1500 km in latitude and longitude and it is centered at 10 deg S. Special attention is paid to the distribution and intensity of the induced vertical motion. The model is integrated for two days and the preliminary results show agreement with the observed 200 mb flow. Of interest is the establishment of a trough and descending motion to the northeast of the heat source. A conjucture is thus made that the Amazon heat source and its fluctuations bear some relationship with the drought problem over Northeast Brazil.

Buchmann, J.↗
NASA NTRS1987

Atmospheric surface and boundary layers of the Amazon Basin

Three phases of work were performed: design of and preparation for the Amazon Boundary Layer Experiment (ABLE 2-A); execution of the ABLE 2-A field program; and analysis of the ABLE 2-A data. Three areas of experiment design were dealt with: surface based meteorological measurements; aircraft missions; and project meteorological support. The primary goal was to obtain a good description of the structure of the atmosphere immediately above the rain forest canopy (top of canopy to a few thousand meters), to describe this region during the growing daytime phase of the boundary layer; and to examine the nighttime stratified state. A secondary objective was to examine the role that deep convective storms play in the vertical transport of heat, water vapor, and other trace gases. While significant progress was made, much of the analysis remains to be done.

Garstang, Michael↗
NASA NTRS1987

C-13/C-12 ratio in methane from the flooded Amazon forest

The C1-C4 hydrocarbon concentrations and the C-13/C-12 ratio in CH4 detected in air samples collected in the Amazon region (3.5 deg S latitude and 5.9 deg W longitude) are analyzed. It is observed that the CH4 concentrations of each sample are enhanced over the background concentration for remote locations, and the C-13/C-12 ratio in this biogenic methane is depleted in C-13 relative to atmospheric CH4. It is concluded, from the C2-C4 hydrocarbon data, that minor yields of C2-C4 hyrocarbons are released coincident with CH4; however, the minor yields do not contribute to the regionally enhanced concentrations of hydrocarbons found in Amazonia and the global atmosphere release of C2-C4 compounds.

Tyler, Stanley C.↗
NASA NTRS1986

Airborne and spaceborne radar images for geologic and environmental mapping in the Amazon rain forest, Brazil

Spaceborne and airborne radar image of portions of the Middle and Upper Amazon basin in the state of Amazonas and the Territory of Roraima are compared for purposes of geological and environmental mapping. The contrasted illumination geometries and imaging parameters are related to terrain slope and surface roughness characteristics for corresponding areas that were covered by each of the radar imaging systems. Landforms range from deeply dissected mountain and plateau with relief up to 500 m in Roraima, revealing ancient layered rocks through folded residual mountains to deeply beveled pediplain in Amazonas. Geomorphic features provide distinct textural signatures that are characteristic of different rock associations. The principle drainages in the areas covered are the Rio Negro, Rio Branco, and the Rio Japura. Shadowing effects and low radar sensitivity to subtle linear fractures that are aligned parallel or nearly parallel to the direction of radar illumination illustrate the need to obtain multiple coverage with viewing directions about 90 degrees. Perception of standing water and alluvial forest in floodplains varies with incident angle and with season. Multitemporal data sets acquired over periods of years provide an ideal method of monitoring environmental changes.

Ford, John P.↗
NASA NTRS1988

Isoprene over the Amazon Basin

Data obtained during the 1985 ABLE expedition to the Amazon are used to describe the diurnal and vertical variations of isoprene. Isoprene is a natural hydrocarbon emitted by many species of trees, particularly those in tropical forests. The concentrations of isoprene at lower levels in the atmosphere undergo large diurnal variations, with the highest concentrations during midday and the lowest during the night. At ground level, outside the forest, peak concentrations of about 3-parts per billion by volume (ppbv) of isoprene were observed around midday. Concentrations were nearly zero before sunrise, increased to their maximum values during the day, and declined after sunset. Concentrations of 1-2 ppbv of isoprene were observed up to 300 m. Near the canopy level, up to 8 ppbv of isoprene were observed. In the forest, concentrations are generally quite low below the canopy and are highest at the level of the canopy. Since the reaction of isoprene with OH radicals is extremely fast, its concentrations fall off rapidly with altitude, so that practically none of it was seen above the boundary layer. During nighttime, however, concentrations comparable to daytime values were observed at altitudes of 300 m and above.

Rasmussen, R. A.↗
NASA NTRS1988

Tropospheric ozone and aerosol distributions across the Amazon Basin

As a part of the NASA Global Tropospheric Experiment to study the Amazon boundary layer, ozone and aerosol distributions were made measured in July-August 1985 by a NASA Electra aircraft on several long-range flights spanning different areas between Tabatinga and Belem, Brazil. Both positive and negative correlations were found in PBL between aerosol concentrations and O3 mixing ratios. The negative correlations result from the downward transport of relatively clean O3-rich air from the upper troposphere into PBL (which normally has higher aerosol loading and lower O3 concentrations than troposphere); positive correlations are found in biomass-burning plumes, where the aerosols are emitted into the air and O3 is photochemically produced. It was found that, in the dry season, a significant portion of the ozone over the rain forest is a result of biomass burning and that the distribution of photochemically produced O3 is strongly affected by synoptic-scale transport from large fires to the south/southeast.

Browell, E. V.↗
NASA NTRS1988

Photochemistry of biogenic emissions over the Amazon forest

The boundary layer chemistry over the Amazon forest during the dry season is simulated with a photochemical model. Results are in good agreement with measurements of isoprene, NO, ozone, and organic acids. Photochemical reactions of biogenic isoprene and NOx can supply most of the ozone observed in the boundary layer. Production of ozone is very sensitive to the availability of NOx, but is insensitive to the isoprene source strength. High concentrations of total odd nitrogen (NOy) are predicted for the planetary boundary layer, about 1 ppb in the mixed layer and 0.75 ppb in the convective cloud layer. Most of the odd nitrogen is present as PAN-type species, which are removed by dry deposition to the forest. The observed daytime variations of isoprene are explained by a strong dependence of the isoprene emission flux on sun angle. Nighttime losses of isoprene exceed rates of reaction with NO3 and O3 and appear to reflect dry-deposition processes. The 24-hour averaged isoprene emission flux is calculated to be 38 mg/sq m per day. Photooxidation of isoprene could account for a large fraction of the CO enrichment observed in the boundary layer under unpolluted conditions and could constitute an important atmospheric source of formic acid, methacrylic acid, and pyruvic acid.

Jacob, Daniel J.↗
NASA NTRS1988

Turbulent transport observed just above the Amazon forest

Observations of turbulent heat, moisture, and momentum transport made at two levels, approximately 5 and 10 m above the Amazon rain forest canopy, are presented. Data acquired at 10 Hz included variances and some mixed third moments of vertical velocity, temperature, and humidity. Two features of the data appear to question the displacement height hypothesis: (1) the characteristic dissipation length scale in the near-canopy layer varied between 20 m in stable conditions to approximately 150 m during afternoon convective conditions, generally larger scales than would be expected, and (2) no appreciable differences in dissipation scales was seen at two observed levels. Heat budgets on selected days show that frequent periods with negative heat flux concurrent with continuing positive moisture flux occur in early afternoon, and this is believed to indicate the patchy nature of canopy-atmosphere coupling. Vertical velocity skewness was observed to be negative on three successive days and exhibited a sharp positive gradient. Time series of some of the terms in the turbulence budgets of vertical velocity variance and kinematic heat flux are presented.

Fitzjarrald, David R.↗
NASA NTRS1988

Formic and acetic acid over the central Amazon region, Brazil. I - Dry season

The concentrations of formic and acetic acids in the gas phase, atmospheric aerosol, and rainwater samples collected in Amazonia at ground level and in the atmosphere during the Amazon Boundary Layer Experiment in July/August 1985 were analyzed by ion exchange chromatography. The diurnal behavior of both acids at ground level and their vertical distribution in the forest canopy point to the existence of vegetative sources as well as to production by chemical reactions in the atmosphere. The concentrations of formic and acetic acids in the gas phase were about 2 orders of magnitude higher than the corresponding concentrations in the atmospheric aerosol. In rainwater, the total formate and acetate represented about one half of the anion equivalents, in contrast to less than 10 percent of the soluble anionic equivalents contributed by these acids in the atmospheric aerosol. The observed levels of these ions in rainwater are considered to be the result of a combination of chemical reactions in hydrometeors and the scavenging of the gaseous acids by cloud droplets.

Andreae, M. O.↗
NASA NTRS1990

The Amazon Boundary-Layer Experiment (ABLE 2B) - A meteorological perspective

The Amazon Boundary-Layer Experiments (ABLE) 2A and 2B, which were performed near Manaus, Brazil in July-August, 1985, and April-May, 1987 are discussed. The experiments were performed to study the sources, sinks, concentrations, and transports of trace gases and aerosols in rain forest soils, wetlands, and vegetation. Consideration is given the design and preliminary results of the experiment, focusing on the relationships between meteorological scales of motion and the flux, transports, and reactions of chemical species and aerosols embedded in the atmospheric fluid. Meteorological results are presented and the role of the meteorological results in the atmospheric chemistry experiment is examined.

Garstang, Michael↗