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NASA NTRS2008

Famine Early Warning Systems and Remote Sensing Data

This book describes the interdisciplinary work of USAID's Famine Early Warning System Network (FEWS NET) and its influence on how food security crises are identified, documented and the kind of responses that result. The book describes FEWS NET's systems and methods for using satellite remote sensing to identify and describe how biophysical hazards impact the lives and livelihoods of the population where they occur. It presents several illustrative case studies that will demonstrate the integration of both physical and social science disciplines in its work. FEWS NET s operational needs have driven science in biophysical remote sensing applications through its collaboration with the US Geological Survey, the National Aeronautics and Space Administration, National Oceanographic and Atmospheric Administration, and US Department of Agriculture, as well as methodologies in the social science domain through its support of the US Agency for International Development, UNWorld Food Program and numerous international non-governmental organizations such as Save the Children, Oxfam and others. Because FEWS NET is an organization that must provide a global picture of food insecurity to decision makers, the information it relies on are by necessity observable and able to be documented. Thus many aspects of traditional livelihood analysis, for example, cannot be used by FEWS NET as they rely upon relationships, and ways of expressing power and knowledge at the local scale that cannot be easily scaled up to express variations in access to food at a community level. The book focuses on the ways that remote sensing information is transformed into an understanding of the actions that must be taken in order to ensure that lives and livelihoods are protected, including describing the remote sensing observations and models needed to identify hazards and the information gathering requirements and analytical frameworks needed to understand their impact. Its focus is primarily analysis conducted in Africa, but also touches upon FEWS NET s work in Central America, Haiti and Afghanistan. As an organization that seeks to integrate social and physical science methodologies and strategies into its work on a daily basis, it is a fascinating and rich example of interdisciplinary knowledge generation and innovation.

Brown, Molly E.↗
NASA NTRS2009

3D Visualization of Monte-Carlo Simulation's of HZE Track Structure and Initial Chemical Species

Heavy ions biophysics is important for space radiation risk assessment [1] and hadron-therapy [2]. The characteristic of heavy ions tracks include a very high energy deposition region close to the track (<20 nm) denoted as the track core, and an outer penumbra region consisting of individual secondary electrons (6-rays). A still open question is the radiobiological effects of 6- rays relative to the track core. Of importance is the induction of double-strand breaks (DSB) [3] and oxidative damage to the biomolecules and the tissue matrix, considered the most important lesions for acute and long term effects of radiation. In this work, we have simulated a 56Fe26+ ion track of 1 GeV/amu with our Monte-Carlo code RITRACKS [4]. The simulation results have been used to calculate the energy depiction and initial chemical species in a "voxelized" space, which is then visualized in 3D. Several voxels with dose >1000 Gy are found in the penumbra, some located ~0.1 mm from the track core. In computational models, the DSB induction probability is calculated with radial dose [6], which may not take into account the higher RBE of electron track ends for DSB induction. Therefore, these simulations should help improve models of DSB induction and our understanding of heavy ions biophysics.

Plante, Ianik↗
NASA NTRS2010

GUI to Facilitate Research on Biological Damage from Radiation

A graphical-user-interface (GUI) computer program has been developed to facilitate research on the damage caused by highly energetic particles and photons impinging on living organisms. The program brings together, into one computational workspace, computer codes that have been developed over the years, plus codes that will be developed during the foreseeable future, to address diverse aspects of radiation damage. These include codes that implement radiation-track models, codes for biophysical models of breakage of deoxyribonucleic acid (DNA) by radiation, pattern-recognition programs for extracting quantitative information from biological assays, and image-processing programs that aid visualization of DNA breaks. The radiation-track models are based on transport models of interactions of radiation with matter and solution of the Boltzmann transport equation by use of both theoretical and numerical models. The biophysical models of breakage of DNA by radiation include biopolymer coarse-grained and atomistic models of DNA, stochastic- process models of deposition of energy, and Markov-based probabilistic models of placement of double-strand breaks in DNA. The program is designed for use in the NT, 95, 98, 2000, ME, and XP variants of the Windows operating system.

Cucinotta, Frances A.↗
NASA NTRS2010

Development of Graphical User Interface for ARRBOD (Acute Radiation Risk and BRYNTRN Organ Dose Projection)

The space radiation environment, particularly solar particle events (SPEs), poses the risk of acute radiation sickness (ARS) to humans; and organ doses from SPE exposure may reach critical levels during extra vehicular activities (EVAs) or within lightly shielded spacecraft. NASA has developed an organ dose projection model using the BRYNTRN with SUMDOSE computer codes, and a probabilistic model of Acute Radiation Risk (ARR). The codes BRYNTRN and SUMDOSE, written in FORTRAN, are a Baryon transport code and an output data processing code, respectively. The ARR code is written in C. The risk projection models of organ doses and ARR take the output from BRYNTRN as an input to their calculations. BRYNTRN code operation requires extensive input preparation. With a graphical user interface (GUI) to handle input and output for BRYNTRN, the response models can be connected easily and correctly to BRYNTRN in friendly way. A GUI for the Acute Radiation Risk and BRYNTRN Organ Dose (ARRBOD) projection code provides seamless integration of input and output manipulations, which are required for operations of the ARRBOD modules: BRYNTRN, SUMDOSE, and the ARR probabilistic response model. The ARRBOD GUI is intended for mission planners, radiation shield designers, space operations in the mission operations directorate (MOD), and space biophysics researchers. The ARRBOD GUI will serve as a proof-of-concept example for future integration of other human space applications risk projection models. The current version of the ARRBOD GUI is a new self-contained product and will have follow-on versions, as options are added: 1) human geometries of MAX/FAX in addition to CAM/CAF; 2) shielding distributions for spacecraft, Mars surface and atmosphere; 3) various space environmental and biophysical models; and 4) other response models to be connected to the BRYNTRN. The major components of the overall system, the subsystem interconnections, and external interfaces are described in this report; and the ARRBOD GUI product is explained step by step in order to serve as a tutorial.

Kim, Myung-Hee↗
NASA NTRS2011

A Stochastic Model of Space Radiation Transport as a Tool in the Development of Time-Dependent Risk Assessment

A new computer model, the GCR Event-based Risk Model code (GERMcode), was developed to describe biophysical events from high-energy protons and heavy ions that have been studied at the NASA Space Radiation Laboratory (NSRL) [1] for the purpose of simulating space radiation biological effects. In the GERMcode, the biophysical description of the passage of heavy ions in tissue and shielding materials is made with a stochastic approach that includes both ion track structure and nuclear interactions. The GERMcode accounts for the major nuclear interaction processes of importance for describing heavy ion beams, including nuclear fragmentation, elastic scattering, and knockout-cascade processes by using the quantum multiple scattering fragmentation (QMSFRG) model [2]. The QMSFRG model has been shown to be in excellent agreement with available experimental data for nuclear fragmentation cross sections

Kim, Myung-Hee Y.↗
NASA NTRS2011

Lidar Remote Sensing for Characterizing Forest Vegetation - Special Issue. Foreword

The Silvilaser 2009 conference held in College Station, Texas, USA, was the ninth conference in the Silvilaser series, which started in 2002 with the international workshop on using lidar (Light Detection and Ranging) for analyzing forest structure, held in Victoria, British Columbia, Canada. Following the Canadian workshop, subsequent forestry-lidar conferences took place in Australia, Sweden, Germany, USA, Japan, Finland, and the United Kingdom (UK). By the time this Silvilaser 2009 special issue of PE&RS is published, the 10th international conference will have been held in Freiburg, Germany, and planning will be ongoing for the 11th meeting to take place in Tasmania, Australia, in October 2011. Papers presented at the 2005 conference held in Blacksburg, Virginia, USA, were assembled in a special issue of PE&RS published in December 2006. Other special issues resulting from previous conferences were published in journals such as the Canadian Journal of Remote Sensing (2003), the Scandinavian Journal of Forest Research (2004), and Japan s Journal of Forest Planning (2008). Given the conference history and the much longer record of publications on lidar applications for estimating forest biophysical parameters, which dates back to the early 1980s, we may consider lidar an established remote sensing technology for characterizing forest canopy structure and estimating forest biophysical parameters. Randy Wynne, a professor at Virginia Tech and the final keynote speaker at Silvilaser 2009, made the case that it was time to push 30 years of research into operations, along the lines of what has already been done to good effect in the Scandinavian countries. In Randy s words, it s time to "Just do it!" This special issue includes a selection of papers presented during the 2009 Silvilaser conference, which consisted of eight sections as follows: (1) biomass and carbon stock estimates, (2) tree species and forest type classification, (3) data fusion and integration, (4, 5, and 6) forest inventory, (7) silvicultural and ecological applications, and (8) terrestrial lidar applications. Within the constraint limiting the number of papers that could be fitted into the special issue we attempted to select those papers that best represented these conference topics and sections, giving special consideration to studies using forestry lidar data collected from each of the three platforms -- terrestrial, airborne, and spaceborne. Reflecting the international participation and reach of the conference, the studies presented here took place in the USA, Canada, Taiwan, the UK, and China.

Popescu, Sorin C.↗
NASA NTRS2012

Sensitivity of Ocean Reflectance Inversion Models for Identifying and Discriminating Between Phytoplankton Functional Groups

The daily, synoptic images provided by satellite ocean color instruments provide viable data streams for observing changes in the biogeochemistrY of marine ecosystems. Ocean reflectance inversion models (ORMs) provide a common mechanism for inverting the "color" of the water observed a satellite into marine inherent optical properties (lOPs) through a combination of empiricism and radiative transfer theory. lOPs, namely the spectral absorption and scattering characteristics of ocean water and its dissolved and particulate constituents, describe the contents of the upper ocean, information critical for furthering scientific understanding of biogeochemical oceanic processes. Many recent studies inferred marine particle sizes and discriminated between phytoplankton functional groups using remotely-sensed lOPs. While all demonstrated the viability of their approaches, few described the vertical distributions of the water column constituents under consideration and, thus, failed to report the biophysical conditions under which their model performed (e.g., the depth and thickness of the phytoplankton bloom(s)). We developed an ORM to remotely identifY Noctiluca miliaris and other phytoplankton functional types using satellite ocean color data records collected in the northern Arabian Sea. Here, we present results from analyses designed to evaluate the applicability and sensitivity of the ORM to varied biophysical conditions. Specifically, we: (1) synthesized a series of vertical profiles of spectral inherent optical properties that represent a wide variety of bio-optical conditions for the northern Arabian Sea under aN Miliaris bloom; (2) generated spectral remote-sensing reflectances from these profiles using Hydrolight; and, (3) applied the ORM to the synthesized reflectances to estimate the relative concentrations of diatoms and N Miliaris for each example. By comparing the estimates from the inversion model to those from synthesized vertical profiles, we were able to identifY those bio-optical conditions under which the inversion model performs both well and poorly.

Werdell, P. Jeremy↗
NASA NTRS2015

NASA Space Radiation Program Integrative Risk Model Toolkit

NASA Space Radiation Program Element scientists have been actively involved in development of an integrative risk models toolkit that includes models for acute radiation risk and organ dose projection (ARRBOD), NASA space radiation cancer risk projection (NSCR), hemocyte dose estimation (HemoDose), GCR event-based risk model code (GERMcode), and relativistic ion tracks (RITRACKS), NASA radiation track image (NASARTI), and the On-Line Tool for the Assessment of Radiation in Space (OLTARIS). This session will introduce the components of the risk toolkit with opportunity for hands on demonstrations. The brief descriptions of each tools are: ARRBOD for Organ dose projection and acute radiation risk calculation from exposure to solar particle event; NSCR for Projection of cancer risk from exposure to space radiation; HemoDose for retrospective dose estimation by using multi-type blood cell counts; GERMcode for basic physical and biophysical properties for an ion beam, and biophysical and radiobiological properties for a beam transport to the target in the NASA Space Radiation Laboratory beam line; RITRACKS for simulation of heavy ion and delta-ray track structure, radiation chemistry, DNA structure and DNA damage at the molecular scale; NASARTI for modeling of the effects of space radiation on human cells and tissue by incorporating a physical model of tracks, cell nucleus, and DNA damage foci with image segmentation for the automated count; and OLTARIS, an integrated tool set utilizing HZETRN (High Charge and Energy Transport) intended to help scientists and engineers study the effects of space radiation on shielding materials, electronics, and biological systems.

Kim, Myung-Hee Y.↗
NASA NTRS2015

Implications of Climate Mitigation for Future Agricultural Production

Climate change is projected to negatively impact biophysical agricultural productivity in much of the world. Actions taken to reduce greenhouse gas emissions and mitigate future climate changes, are thus of central importance for agricultural production. Climate impacts are, however, not unidirectional; some crops in some regions (primarily higher latitudes) are projected to benefit, particularly if increased atmospheric carbon dioxide is assumed to strongly increase crop productivity at large spatial and temporal scales. Climate mitigation measures that are implemented by reducing atmospheric carbon dioxide concentrations lead to reductions both in the strength of climate change and in the benefits of carbon dioxide fertilization. Consequently, analysis of the effects of climate mitigation on agricultural productivity must address not only regions for which mitigation is likely to reduce or even reverse climate damages. There are also regions that are likely to see increased crop yields due to climate change, which may lose these added potentials under mitigation action. Comparing data from the most comprehensive archive of crop yield projections publicly available, we find that climate mitigation leads to overall benefits from avoided damages at the global scale and especially in many regions that are already at risk of food insecurity today. Ignoring controversial carbon dioxide fertilization effects on crop productivity, we find that for the median projection aggressive mitigation could eliminate approximately 81% of the negative impacts of climate change on biophysical agricultural productivity globally by the end of the century. In this case, the benefits of mitigation typically extend well into temperate regions, but vary by crop and underlying climate model projections. Should large benefits to crop yields from carbon dioxide fertilization be realized, the effects of mitigation become much more mixed, though still positive globally and beneficial in many food insecure countries.

Mueller, Christoph↗
NASA NTRS2021

Disentangling the Regional Climate Impacts of Competing Vegetation Responses to Elevated Atmospheric CO2

Biophysical vegetation responses to elevated atmospheric carbon dioxide (CO2) affect regional hydroclimate through two competing mechanisms. Higher CO2 increases leaf area (LAI), thereby increasing transpiration and water losses. Simultaneously, elevated CO2 reduces stomatal conductance and transpiration, thereby increasing rootzone soil moisture. Which mechanism dominates in the future is highly uncertain, partly because these two processes are difficult to explicitly separate within dynamic vegetation models. We address this challenge by using the GISS ModelE global climate model to conduct a novel set of idealized 2×CO2 sensitivity experiments to: evaluate the total vegetation biophysical contribution to regional climate change under high CO2; and quantify the separate contributions of enhanced LAI and reduced stomatal conductance to regional hydroclimate responses. We find that increased LAI exacerbates soil moisture deficits across the sub‐tropics and more water‐limited regions, but also attenuates warming by ∼0.5–1°C in the US Southwest, Central Asia, Southeast Asia, and northern South America. Reduced stomatal conductance effects contribute ∼1°C of summertime warming. For some regions, enhanced LAI and reduced stomatal conductance produce nonlinear and either competing or mutually amplifying hydroclimate responses. In northeastern Australia, these effects combine to exacerbate radiation‐forced warming and contribute to year‐round water limitation. Conversely, at higher latitudes these combined effects result in less warming than would otherwise be predicted due to nonlinear responses. These results highlight substantial regional variation in CO2‐driven vegetation responses and the importance of improving model representations of these processes to better quantify regional hydroclimate impacts.

Regional climate impacts↗
NASA NTRSDate not supplied

What's New in the PSI? (Physical Sciences Informatics)

The NASA Physical Sciences Informatics (PSI) database is NASA’s archival for physical sciences research in microgravity – on ISS and also other reduced gravity platforms. The database has been making data from microgravity physical science investigations publicly available since its launch late 2014. The database was an early investment in Open Science for NASA’s Biophysics and Physical Sciences (BPS) Division of the Science Mission Directorate (SMD), who conducts fundamental and applied physical sciences yielding research data in 6 disciplines: biophysics, combustion science, complex fluids, fluid physics, fundamental physics, and materials science. PSI started initially with data from 14 microgravity investigations. Receipt of data through the years and an annual NRA to fund ground investigations extending flight datasets has increased the total to 72 investigations available with 8 new datasets in the 2020 NRA (NNH20ZDA014N). These new datasets are open for public access at the PSI website at https://www.nasa.gov/PSI.

Physical Sciences Informatics PSI database↗
NASA NTRS2023

Using Satellite Data to Characterize Land Surface Processes in Morocco

This study endeavors to produce a comprehensive land cover map for Morocco, addressing the absence of such a detailed map in the country. Our research encompasses ecological and climatic aspects specific to Morocco, while the methods used can be adapted to various regions and countries, considering their unique climatic conditions and land cover types. A combination of MODIS and Landsat datasets was employed to create a 5 km resolution Land Use and Land Cover (LULC) map for the entire nation. The process involved the aggregation and advanced processing of these datasets using surface processes algorithms. The resulting LULC map is the first of its kind for Morocco, shedding light on land cover distribution nationwide. It shows that approximately 13.5% of the country is covered by forests, predominantly in the Atlas and Rif mountains, Rabat–Sale, and the southern regions. Grasslands occupy over 16% of the study area, mainly in the north-east and west. Urban areas, including major cities like Casablanca, Rabat, and Marrakech, span nearly 3400 km². Moreover, large areas of shrublands and bare lands are evident across the country, while agricultural lands account for almost 20% of the national territory, mainly in the interior plains and north-western Atlantic coast. This study forms a crucial basis for ecological and climatic research in Morocco and serves as a valuable reference for various disciplines such as agriculture, natural resource management, and climate modeling. The mapping of biophysical parameters for each land cover class is a key feature of our research, and these parameters will be instrumental in a subsequent study examining the impact of urban development on surface climate in Morocco. Overall, our study underscores the importance of understanding biophysical parameters in addressing environmental and societal challenges.

Mohammed Thaiki↗
NASA NTRS2024

Deciphering the Spectra of Flowers to Map Landscape-scale Blooming Dynamics

Like leaves, floral coloration is driven by inherent optical properties, which are determined by pigments, scattering structure, and thickness. However, establishing the relative contribution of these factors to canopy spectral signals is usually limited to in-situ observations. Modeling flowering dynamics (e.g., blooming duration, spatial distribution) at the landscape scale may reveal insights into ecological processes and phenological adaptations to environmental changes. Multitemporal visible to shortwave infrared (VSWIR) imaging spectroscopy observations are especially suited for such efforts. Reflectance in this spectral range is sensitive to major flower pigments, flowering phenology traces, and biophysical differences between flowers and other plant parts. We explored how flowers contribute to spectral signals using a time series of imagery from the Airborne Visible InfraRed Imaging Spectrometer - Next Generation (AVIRIS-NG) collected as part of the SBG High-Frequency Time Series (SHIFT) campaign as a case study. Airborne data were collected weekly during the spring of 2022 across two natural reserves in California. Field spectra were gathered from blooming plots at leaf, flower, and canopy levels at two time points during the campaign. The processed data was used to investigate flowering species' spectro-temporal variation and spatial distribution using Spectral Mixture Residual, Gaussian clustering techniques, and a proposed narrow-band flowering index. Linear spectral unmixing allowed the computation of the weighted contribution of four major high-variance endmembers (leaves, flowers, soil, dark) and low-variance residual signal that comprises subtle spectral features used to track biophysical processes. The reflectance residual was projected on a low principal component basis to characterize flowering clusters' variation and spatial distribution based on the Gaussian mixture model, providing an uncertainty metric to assess the results. Mapping flowering events from modeling spectro-temporal dynamics throughout the season, from pre-blooming to post-flowering stages, allowed us to identify gradient variations in spectral features within the VSWIR spectral range linked to flowering pigments. Time series of the Mixture Residual Blooming Index and the Red-Edge Normalized Difference Vegetation Index revealed specific flowering and greenness phenophases across the two main species (Coreopsis gigantea, Artemisia californica) in the flowering areas. Overall, our approach opens opportunities for future satellite monitoring of floral cycles at broader scales.

Yoseline Angel↗
NASA NTRS1993

Wall extensibility: its nature, measurement and relationship to plant cell growth

Expansive growth of plant cells is controlled principally by processes that loosen the wall and enable it to expand irreversibly. The central role of wall relaxation for cell expansion is reviewed. The most common methods for assessing the extension properties of plant cell walls ( wall extensibility') are described, categorized and assessed critically. What emerges are three fundamentally different approaches which test growing cells for their ability (a) to enlarge at different values of turgor, (b) to induce wall relaxation, and (c) to deform elastically or plastically in response to an applied tensile force. Analogous methods with isolated walls are similarly reviewed. The results of these different assays are related to the nature of plant cell growth and pertinent biophysical theory. I argue that the extensibilities' measured by these assays are fundamentally different from one another and that some are more pertinent to growth than others.

Review, Academic↗
NASA NTRS1990

Physical basis for altered stem elongation rates in internode length mutants of Pisum

Biophysical parameters related to gibberellin (GA)-dependent stem elongation were examined in dark-grown stem-length genotypes of Pisum sativum L. The rate of internode expansion in these genotypes is altered due to recessive mutations which affect either the endogenous levels of, or response to, GA. The GA deficient dwarf L181 (ls), two GA insensitive semierectoides dwarfs NGB5865 and NGB5862 (lka and lkb, respectively) and the slender' line L197 (la crys), which is tall regardless of GA content, were compared to the wild-type tall cultivar, Torsdag. Osmotic pressure, estimated by vapor pressure osmometry, and turgor pressure, measured directly with a pressure probe, did not correlate with the differences in growth rate among the genotypes. Mechanical wall properties of frozen-thawed tissue were measured using a constant force assay. GA deficiency resulted in increased wall stiffness judged both on the basis of plastic compliance and plastic extensibility normalized for equal stem circumference. Plastic compliance was not reduced in the GA insensitive dwarfs, though lka reduced circumference-normalized plasticity. In contrast, in vivo wall relaxation, determined by the pressure-block technique, differed among genotypes in a manner which did correlate with extension rates. The wall yield threshold was 1 bar or less in the tall lines, but ranged from 3 to 6 bars in the dwarf genotypes. The results with the ls mutant indicate that GA enhances stem elongation by both decreasing the wall yield threshold and increasing the wall yield coefficient. In the GA-insensitive mutants, lka and lkb, the wall yield threshold is substantially elevated. Plants possessing lka may also possess a reduced wall yield coefficient.

NASA Discipline Number 29-20↗
NASA NTRS2015

The AgMIP Framework to Evaluate Agricultural Pathways

This talk will describe the community and research framework that AgMIP has built to enable evidence-based adaptation investment. We provide expertise on the ground and connect various disciplines in order to allow specific adaptations to be evaluated for their biophysical and socio-economic ramifications.

agriculture↗
NASA NTRS2016

Recent Progresses in Incorporating Human Land-Water Management into Global Land Surface Models Toward Their Integration into Earth System Models

The global water cycle has been profoundly affected by human land-water management. As the changes in the water cycle on land can affect the functioning of a wide range of biophysical and biogeochemical processes of the Earth system, it is essential to represent human land-water management in Earth system models (ESMs). During the recent past, noteworthy progress has been made in large-scale modeling of human impacts on the water cycle but sufficient advancements have not yet been made in integrating the newly developed schemes into ESMs. This study reviews the progresses made in incorporating human factors in large-scale hydrological models and their integration into ESMs. The study focuses primarily on the recent advancements and existing challenges in incorporating human impacts in global land surface models (LSMs) as a way forward to the development of ESMs with humans as integral components, but a brief review of global hydrological models (GHMs) is also provided. The study begins with the general overview of human impacts on the water cycle. Then, the algorithms currently employed to represent irrigation, reservoir operation, and groundwater pumping are discussed. Next, methodological deficiencies in current modeling approaches and existing challenges are identified. Furthermore, light is shed on the sources of uncertainties associated with model parameterizations, grid resolution, and datasets used for forcing and validation. Finally, representing human land-water management in LSMs is highlighted as an important research direction toward developing integrated models using ESM frameworks for the holistic study of human-water interactions within the Earths system.

biogeochemistry↗