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At least 145 records · Page 8

Population‐level gene expression can repeatedly link genes to functions in maize

SUMMARY Transcriptome‐wide association studies (TWAS) can provide single gene resolution for candidate genes in plants, complementing genome‐wide association studies (GWAS) but efforts in plants have been met with, at best, mixed success. We generated expression data from 693 maize genotypes, measured in a common field experiment, sampled over a 2‐h period to minimize diurnal and environmental effects, using full‐length RNA‐seq to maximize the accurate estimation of transcript abundance. TWAS could identify roughly 10 times as many genes likely to play a role in flowering time regulation as GWAS conducted data from the same experiment. TWAS using mature leaf tissue identified known true‐positive flowering time genes known to act in the shoot apical meristem, and trait data from a new environment enabled the identification of additional flowering time genes without the need for new expression data. eQTL analysis of TWAS‐tagged genes identified at least one additional known maize flowering time gene through trans ‐eQTL interactions. Collectively these results suggest the gene expression resource described here can link genes to functions across different plant phenotypes expressed in a range of tissues and scored in different experiments.

Torres‐Rodríguez, J. Vladimir↗

Best estimate of the planetary boundary layer height from multiple remote sensing measurements

Remote sensing measurements have been widely used to estimate the planetary boundary layer height (PBLHT). Each remote sensing approach offers unique strengths and faces different limitations. In this study, we use machine learning (ML) methods to produce a best-estimate PBLHT (PBLHT-BE-ML) by integrating four PBLHT estimates derived from remote sensing measurements at the Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) Southern Great Plains (SGP) observatory. Three ML models – random forest (RF) classifier, RF regressor, and light gradient-boosting machine (LightGBM) – were trained on a dataset from 2017 to 2023 that included radiosonde, various remote sensing PBLHT estimates, and atmospheric meteorological conditions. Evaluations indicated that PBLHT-BE-ML from all three models improved alignment with the PBLHT derived from radiosonde data (PBLHT-SONDE), with LightGBM demonstrating the highest accuracy under both stable and unstable boundary layer conditions. Feature analysis revealed that the most influential input features at the SGP site were the PBLHT estimates derived from (a) potential temperature profiles retrieved using Raman lidar (RL) and atmospheric emitted radiance interferometer (AERI) measurements (PBLHT-THERMO), (b) vertical velocity variance profiles from Doppler lidar (PBLHT-DL), and (c) aerosol backscatter profiles from micropulse lidar (PBLHT-MPL). The trained models were then used to predict PBLHT-BE-ML at a temporal resolution of 10 min, effectively capturing the diurnal evolution of PBLHT and its significant seasonal variations, with the largest diurnal variation observed over summer at the SGP site. We applied these trained models to data from the ARM Eastern Pacific Cloud Aerosol Precipitation Experiment (EPCAPE) field campaign (EPC), where the PBLHT-BE-ML, particularly with the LightGBM model, demonstrated improved accuracy against PBLHT-SONDE. Analyses of model performance at both the SGP and EPC sites suggest that expanding the training dataset to include various surface types, such as ocean and ice-covered areas, could further enhance ML model performance for PBLHT estimation across varied geographic regions.

Zhang, Damao [Pacific Northwest National Laborator↗

Television studies of faint meteors

Low-light-level television systems have shown considerable promise in the optical extension of meteor flux measurements to faint magnitudes. In particular, the secondary electron conduction vidicon has demonstrated its ability to detect fast, faint meteors. Such a system has been calibrated and used to obtain the cumulative flux of meteors above threshold masses of .1 to .001 gram. The results indicate a basic continuity with photographic and satellite measurements. The observed data were further analyzed for diurnal and directional effects.-

Clifton, K. S.↗

UBV photometry of Mars

A critical analysis of selected high-quality photometric observations of Mars indicates that: (1) the phase function is concave upward out to at least 40-deg phase. No sudden brightening occurs at opposition, but the curvature increases at small phase; (2) large systematic differences (0.1-0.2 mag.) exist between different observers' data. However, the small random scatter attributable to Mars (0.01-0.02 mag.) in the better series suggests that these differences represent systematic errors in data reduction, not variations in the planet's brightness; (3) the disentangling of seasonal, diurnal, and phase effects leaves considerable ambiguity; more observations are needed, over a long time, with a stable instrumental system. However, even the present data are sufficient to expose substantial errors in published phase curves of Mars (and consequently, in interpretations based on them).

Young, A. T.↗

A computer software system for the generation of global ocean tides including self-gravitation and crustal loading effects

A computer software system is described which computes global numerical solutions of the integro-differential Laplace tidal equations, including dissipation terms and ocean loading and self-gravitation effects, for arbitrary diurnal and semidiurnal tidal constituents. The integration algorithm features a successive approximation scheme for the integro-differential system, with time stepping forward differences in the time variable and central differences in spatial variables.

Estes, R. H.↗

Dynamics of the boundary layer of Mars

Measurements of daily average atmospheric pressure fluctuations at near-tropical and mid-latitude sites on the Martian northern hemisphere are analyzed with respect to their relation to seasonal and shorter period processes. The variability of the sol (Martian day) mean pressure at the mid-latitude site is five times the variability at the near-tropical site during the fall season. Variations in atmospheric dust result in more pronounced effects in the diurnal and semidiurnal pressure components, and at the southern rather than the northern site, due to the origin of most of the dust in the southern hemisphere during this season. Periods on the order of 3 to 4 sols, similar to terrestrial synoptic periods, appear at both sites, with a sharper spectrum at the northern site.

Tillman, J. E.↗

High accuracy OMEGA timekeeping

The Smithsonian Astrophysical Observatory (SAO) operates a worldwide satellite tracking network which uses a combination of OMEGA as a frequency reference, dual timing channels, and portable clock comparisons to maintain accurate epoch time. Propagational charts from the U.S. Coast Guard OMEGA monitor program minimize diurnal and seasonal effects. Daily phase value publications of the U.S. Naval Observatory provide corrections to the field collected timing data to produce an averaged time line comprised of straight line segments called a time history file (station clock minus UTC). Depending upon clock location, reduced time data accuracies of between two and eight microseconds are typical.

Imbier, E. A.↗

Thermal modeling of cometary nuclei

A model of the sublimation of volatile ices from a cometary nucleus is presented which includes the effects of (1) diurnal heating and cooling, (2) rotation period and pole orientation, (3) the thermal properties of the ice and subsurface layers, and (4) the contributions from coma opacity, scattering and thermal emission where the properties of the coma are derived from the integrated rate of volatile production by the nucleus. In applying the model to the case of the 1986 apparition of Halley's comet, it is found that the generation of a cometary dust coma increases the total energy reaching the Halley nucleus due to the greater geometrical cross-section of the coma as compared with the bare nucleus. The calculated coma opacity of Halley is about 0.2 at 1 AU from the sun and 1.2 at perihelion. Possible consequences of the results obtained for the generation of nongravitational forces, volatile production rates for comets and cometary lifetimes against sublimation are discussed.

Weissman, P. R.↗

O1, P1, N2 models of the global ocean tide on an elastic earth plus surface potential and spherical harmonic decompositions for M2, S2, and K1

The models of M2, S2, and K1 presented in Parke and Hendershott (1980) are supplemented with models of O1, P1, and N2. The models satisfy specified elevation boundary conditions and are generated by fighting a small number of test functions to island data. Maps are presented of the geocentric tide, the induced free space potential, the induced vertical component of the solid earth tide, and the induced vertical component of the gravitational field for each new component. Maps of the tidal potential seen by an observer fixed to the surface of the solid earth are also presented for all six constituents. Spherical harmonic coefficients up to order four and the rms magnitude of the coefficients to order fifteen are presented for each constituent. The rms magnitudes of the P1 and K1 coefficients normalized by their respective equilibrium amplitudes are compared to determine the effect of the diurnal core resonance.

Parke, M. E.↗

Anomalous meridional thermospheric neutral winds in the AE-E NATE data: Effects of the equatorial nighttime pressure bulge

The work described here makes it possible to identify anomalous wind behavior such as the nighttime meridional wind abatements that occur at F-region heights. A new analysis technique uses a simple empirical wind model to simulate measurements of 'normal' winds (as measured by the Neutral Atmosphere and Temperature Experiment (NATE) that flew on the Atmosphere Explorer-E (AE-E)) to highlight anomalous wind measurements made by the satellite while in circular orbits at 270-290 km altitude. Our approach is based on the recognition that the 'in orbit' wind variation must show the combined effects of the diurnal wind variation as seen from the ground with the latitude variation of the satellite orbit. For the data period 77250-78035 examined thus far, the wind abatement always occurred with a corresponding pressure or temperature maximum, and was detected on 12 out of the 36 nights with data. This study has revealed that the wind abatement occur only during or shortly after increases in solar extreme ultraviolet (EUV) flux, as indicated by daily radio flux measurements. In the past, nighttime wind reversals at mid-latitudes have been associated with increased geomagnetic activity. This study indicates that intensified solar EUV heating may be responsible for anomalous thermospheric nighttime winds at mid-latitudes.

Goembel, L.↗

Surface measurements of solar irradiance: A study of the spatial correlation between simultaneous measurements at separated sites

Pyranometers have been used for many years to measure broadband surface incoming solar irradiance, data that is necessary for surface energy budget, cloud forcing, and satellite validation research. Because such measurements are made at a specific location, it is unclear how representative they may be of a larger area. This study attempts to determine a reasonable spacing between measurement sites for such research by computing the correlation, and standard deviation from perfect correlation, between simultaneous measurements of incoming solar irradiance for a network of surface measurement sites covering a 75 km x 75 km area. Using 1-min data collected from this network of 11 sites during the NASA First ISSCP Radiation Experiment/Surface Radiation Budget (FIRE/SRB) Project temporal averages were calculated. The correlation between any two of these sites was determined by comparing simultaneous measurement averages for the 55 possible combinations of site pairs, along with the distances between them. In an attempt to remove the effect of the diurnal cycle, thus leaving clouds as the primary influence on correlation of the radiation field, model results for a clear day were used to normalize measured irradiances and correlations were again calculated.

Long, Charles N.↗

A New Empirical Thermospheric Density Model JB2006 using New Solar Indices

A new empirical atmospheric density model is developed using the CIRA72 (Jacchia 71) model as the basis for the diffusion equations. New solar indices based on orbit based sensor data are used for the solar irradiances in the extreme and far ultraviolet wavelengths. New exospheric temperature and semiannual density equations are employed to represent the major thermospheric density variations. Temperature correction equations are also developed for diurnal and latitudinal effects, and finally density correction factors are used for model corrections required at high altitude (1500-4000 km). The new model, Jacchia-Bowman 2006, is validated through comparisons of accurate daily density drag data previously computed for numerous satellite. For 400 km altitude the standard deviation of 16% for the standard Jacchia model is reduced to 10% for the new JB2006 model for periods of low geomagnetic storm activity.

Bowman, Bruce R.↗

TPSAS-NF1676L-10735-DND

The Clouds and the Earth's Radiant Energy System (CERES) project has now surpassed the 10-year mark, has combined rigorous calibration, improved scene identification, and multi-satellite data fusion to produce a climate-accuracy data set of global 1° gridded radiative surface and TOA fluxes, and cloud properties. CERES provides the climate community with four observed TOA flux products. The ERBE-like product uses the same algorithms as ERBE in order to be compared with the ERBE time period. The SSF product uses the improved scene identification and radiance to flux conversion. The SYN product uses GEO derived clouds and fluxes to provide diurnally complete TOA fluxes. The EBAF product provides net balanced fluxes tied to the ocean heat storage term. This product is suited for climate modelers estimating the global mean energy budget. Each successive CERES flux product applies the improvements over the previous product. This presentation will focus on the diurnal averaging improvements by the inclusion of imager radiances from 5 geostationary (GEO) satellites at 3-hourly intervals to estimate the flux in between CERES observations. The regional monthly mean flux differences based on SYN (CERES/GEO) and SSF (CERES-only) can exceed 20 Wm^-2. CERES shortwave and longwave fluxes have been rigorously validated and are key elements in evaluating the ability of climate models to predict both past and future climate states. The CERES normalization of GEO derived fluxes in order to maintain the CERES instrument calibration and are consistent globally within 0.1 Wm^-2, even if the GEO calibration is artificially altered by ±5%, twice the anticipated calibration error. The predicted GEO TOA fluxes normalized to Terra have been compared at Aqua times to Aqua flux observations, as well as with GERB hourly fluxes over the METEOSAT domain. Similarly ground based radiometers have been used to validate the CERES radiative transfer computed surface fluxes and have confirmed that the CERES/GEO fluxes have improved the computed surface flux product. Although the GEO based fluxes are of inferior quality then the CERES observed fluxes, they capture the diurnal signal more effectively than using constant meteorology between CERES measurements. The validation of the GEO derived fluxes and clouds will be shown.

D. R. Doelling↗

Earth Radiation Budget Climate Record Composed of Multiple Satellite Observations

Effects of cloud diurnal cycle on top-of-atmosphere (TOA) and surface regional monthly mean irradiances, climatological mean, and anomalies are analyzed using CERES derived TOA irradiances and surface irradiances computed with MODIS derived cloud properties. Cloud properties derived from Terra and Aqua MODIS are sufficient to capture cloud diurnal cycle to compute regional monthly mean surface irradiances. While missing cloud diurnal cycle leads to a biased TOA and surface regional irradiances for regions with a strong cloud diurnal cycle, monthly regional TOA and surface anomalies derived from one sun-synchronous orbit agrees well with those derived from two sun-synchronous orbits. Based on these results, the algorithm to produce Edition 4.2 CERES EBAF product is developed. Regional TOA and surface climatological means derived from one sun-synchronous orbit are adjusted to match corresponding climatological means derived from Terra+Aqua observations. This climatological adjustment approach is used to merge the Terra only period to the Terra+Aqua period and to extend the Terra and Aqua record by merging NOAA20 observations. Two additional differences of Edition 4.2 EBAF algorithm to compute surface irradiances compared to the earlier version are: 1) no geostationary satellite derived cloud properties are used and 2) temperature and humidity from MERRA-2 instead of GEOIS-5.4.1 are used. Once surface monthly regional mean irradiances are compared with surface observations, the agreement is equivalent to the agreement with the earlier version. However, because surface irradiances are not affected by geostationary satellite artifacts, regional surface irradiance anomaly time series is significantly improved, especially for longwave irradiances.

Seiji Kato↗

A protocol and analysis of year-long simulations of global storm-resolving models and beyond

We propose a protocol to evaluate and analyze year-long simulations of global storm-resolving models (GSRMs). The proposed protocol complements an earlier 40-day simulation protocol under the DYAMOND (DYnamics of the Atmospheric general circulation Modeled On Non-hydrostatic Domains) project to allow the analysis of the seasonal cycle and associated climatic relevant phenomena. This intercomparison aims to reveal how GSRMs, which can simulate mesoscale convective systems (MCSs) in the global domain, reproduce atmospheric large-scale structures related to convection beyond month-long simulations. The intercomparison for one-year simulations is conducted by either atmosphere-only models or atmosphere–ocean coupled models with atmospheric horizontal mesh sizes less than 5 km. We recommend the continuous four seasons from March 2020 to February 2021 as a target period for the intercomparison but with options for many groups to join more flexibly. The output variables are collected at 0.25° resolution, and archives of a small set of native grid variables are encouraged to analyze tropical cyclones and MCSs. Through the proposed global storm-resolving simulation, we will evaluate the climatological distributions of the atmospheric large-scale circulations, such as the Intertropical Convergence Zone (ITCZ), monsoon, midlatitude jets, their time evolution, and the upscale impacts on them. We present sample analyses from a one-year simulation using the 3.5 km mesh Nonhydrostatic Icosahedral Atmospheric Model (NICAM), revealing the realistic zonal contrast of tropical precipitation, no double ITCZ structure, the reasonable midlatitude jet position and intensity but a weak bias of storm track activities, and a warm bias over the Eurasia during boreal winter. We also clarify the cross-scale interaction, such as the effects of cold pools on mean precipitation over the Maritime Continent through the precipitation diurnal cycle and the effects of resolved gravity waves on midlatitude mean flows. The proposed one-year simulation protocol is referred to as the “Sendai Protocol.” This protocol is not unique or definite for evaluating GSRMs; we prospect a hierarchical set of experiments from short-term to multi-year simulations as GSRM intercomparisons.

54 ENVIRONMENTAL SCIENCES↗

Radiometric Stability in 16 years of AIRS Hyperspectral Infrared Data (SPIE OP-431-20)

With global warming at the rate of 10 mK/yr, it is important to at least characterize any trend in the AIRS data, which may impact the use of AIRS data for climate change research. We evaluated the stability of the AIRS v5 calibration for seven atmospheric window channels between 2002 and 2018 under tropical ocean clear conditions. Trends for the channels between 961, 1128 and 1231 cm-1 channels are typically +3 mK/yr; for 790 and 901 cm-1 the trend is 6 mK/yr, i.e. the observations are increasingly getting warmer than expected. The trends are day/night consistent. The trend for the 2508 and 2616 cm-1 channels is close to 10 mK/yr at night, but closer to 6 mK/yr during the day. On an absolute scale these trends are small, but not when viewed in the context of global warming at a 10 mK/yr rate. While the warming trends are consistent with increased scattering from the scan mirrors, which create an error in reading the Onboard Blackbody Calibration, the resulting changes in the gain are a factor of about five larger than observed changes in the gain. The effects of scattering due to scan mirror contamination are evident at extremely cold temperatures, but scattering does not produce the observed warming at warm temperatures. It is possible that much of the observed warming in the AIRS window channels is a geophysical effect related to the warming of the oceans, resulting in a shift in the diurnal cycle and skin effect correction. This requires more careful evaluation.

Manning, Evan M.↗

Radiometric Stability in 16 years of AIRS Hyperspectral Infrared Data (SPIE OP-431-20)

With global warming at the rate of 10 mK/yr, it is important to at least characterize any trend in the AIRS data, which may impact the use of AIRS data for climate change research. We evaluated the stability of the AIRS v5 calibration for seven atmospheric window channels between 2002 and 2018 under tropical ocean clear conditions. Trends for the channels between 961, 1128 and 1231 cm-1 channels are typically +3 mK/yr; for 790 and 901 cm-1 the trend is 6 mK/yr, i.e. the observations are increasingly getting warmer than expected. The trends are day/night consistent. The trend for the 2508 and 2616 cm-1 channels is close to 10 mK/yr at night, but closer to 6 mK/yr during the day. On an absolute scale these trends are small, but not when viewed in the context of global warming at a 10 mK/yr rate. While the warming trends are consistent with increased scattering from the scan mirrors, which create an error in reading the Onboard Blackbody Calibration, the resulting changes in the gain are a factor of about five larger than observed changes in the gain. The effects of scattering due to scan mirror contamination are evident at extremely cold temperatures, but scattering does not produce the observed warming at warm temperatures. It is possible that much of the observed warming in the AIRS window channels is a geophysical effect related to the warming of the oceans, resulting in a shift in the diurnal cycle and skin effect correction. This requires more careful evaluation.

Manning, Evan M.↗