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At least 145 records · Page 8

Climate change reshapes the drivers of false spring risk across European trees

Temperate and boreal forests are shaped by late spring freezing events after budburst, which are also known as false springs. Research has generated conflicting results on whether or not these events will change with climate change, potentially because---to date---no study has compared the myriad climatic and geographic factors that contribute to a plant's risk of a false spring. We assessed and compared the strength of the effects of mean spring temperature, distance from the coast, elevation and the North Atlantic Oscillation (NAO) using PEP725 leafout data for six temperate, decidious tree species across 11,648 sites in Central Europe and how these predictors shifted with climate change. Across species before recent warming, mean spring temperature and distance from the coast were the strongest predictors, with higher mean spring temperatures associated with decreased risk in false springs (–7.64% per 2°C increase) and sites further from the coast experiencing an increased risk (5.32% per 150km from the coast). Elevation (2.23% per 200m increase in elevation) and NAO index (1.91% per 0.3 increase) also increased false spring risk. With climate change, elevation and distance from coast---i.e., the geographic factors---remain relatively stable, while climatic factors shifted in magnitude for mean spring temperature (down to -2.84% in risk per 2°C), and in direction, with positive NAO phases leading to lower risk (-9.15% per 0.3). The residual effects of climate change---unexplained by the climatic and geographic factors already included in the model---magnified the species-level variation in risk, with risk increasing among early-leafout species (i.e., Aesculus hippocastanum, Alnus glutinosa and Betula pendula) but a decline or no change in risk among late-leafout species (i.e., Fagus sylvatica, Fraxinus excelsior and Quercus robur). Our results show that climate change has reshaped the major drivers of false spring risk and highlight how considering multiple factors can yield a better understanding of the complexities of climate change.

Climate change↗

Outage Cause Classification of Power Distribution Systems with Machine Learning and Real-World Data

Power distribution systems are geographically dispersed by nature. It may be affected by various factors, such as vegetation, weather, animal and human behaviors. Present response procedures to an outage event massively rely on expert experience and thus tend to be time-consuming. Automatic outage event detection and classification will help to reduce the responding and restoration time. However, this issue is less addressed with existing research done in this area. In this applied research, a set of waveform pre-processing techniques are first proposed to prepare the waveform data for being used as inputs to the classification algorithm. Further, a machine learning-based algorithm is proposed to classify the outage events according to their root causes, e.g. tree contact, animal contact, lightning, etc. Available data include three phase current & voltage waveforms and contextual information during the distribution system outages. The proposed machine learning algorithm takes the current and voltage waveforms as direct inputs in search of features that humans are unable to capture. Real data provided by a distribution company in the East Tennessee region is used to test the proposed pre-processing techniques and the classification algorithm.

Sun, Haoyuan↗

A gene-editing/complementation strategy for tissue-specific lignin reduction while preserving biomass yield

Lignification of secondary cell walls is a major factor conferring recalcitrance of lignocellulosic biomass to deconstruction for fuels and chemicals. Genetic modification can reduce lignin content and enhance saccharification efficiency, but usually at the cost of moderate-to-severe growth penalties. We have developed a method, using a single DNA construct that uses CRISPR–Cas9 gene editing to knock-out expression of an endogenous gene of lignin monomer biosynthesis while at the same time expressing a modified version of the gene’s open reading frame that escapes cutting by the Cas9 system and complements the introduced mutation in a tissue-specific manner. Expressing the complementing open reading frame in vessels allows for the regeneration of Arabidopsis plants with reduced lignin, wild-type biomass yield, and up to fourfold enhancement of cell wall sugar yield per plant. The above phenotypes are seen in both homozygous and bi-allelic heterozygous T1 lines, and are stable over at least four generations. The method provides a rapid approach for generating reduced lignin trees or crops with one single transformation event, and, paired with a range of tissue-specific promoters, provides a general strategy for optimizing loss-of-function traits that are associated with growth penalties. This method should be applicable to any plant species in which transformation and gene editing are feasible and validated vessel-specific promoters are available.

59 BASIC BIOLOGICAL SCIENCES↗

Explanation of Change Cost and Schedule Growth Study Interim Status Briefing

This slide presentation reviews the study to understand the changes in cost and schedule growth for NASA projects. A second goal was to determine the percentage of growth that was outside the control of the project. The study examined project documentation, conducted interviews with key project personnel, and allocated growth events to an Explanation of Change (EoC) tree to quantify the reasons for growth in the scheduled time. This briefing reviews the results of the study of the first 20 missions.

Croonce, Thomas↗

The Number and Pattern of Viral Genomic Reassortments are not Necessarily Identifiable from Segment Trees

Reassortment is an evolutionary process common in viruses with segmented genomes. These viruses can swap whole genomic segments during cellular co-infection, giving rise to novel progeny formed from the mixture of parental segments. Since large-scale genome rearrangements have the potential to generate new phenotypes, reassortment is important to both evolutionary biology and public health research. However, statistical inference of the pattern of reassortment events from phylogenetic data is exceptionally difficult, potentially involving inference of general graphs in which individual segment trees are embedded. In this paper, we argue that, in general, the number and pattern of reassortment events are not identifiable from segment trees alone, even with theoretically ideal data. We call this fact the fundamental problem of reassortment, which we illustrate using the concept of the “first-infection tree,” a potentially counterfactual genealogy that would have been observed in the segment trees had no reassortment occurred. Further, we illustrate four additional problems that can arise logically in the inference of reassortment events and show, using simulated data, that these problems are not rare and can potentially distort our observation of reassortment even in small data sets. Finally, we discuss how existing methods can be augmented or adapted to account for not only the fundamental problem of reassortment, but also the four additional situations that can complicate the inference of reassortment.

59 BASIC BIOLOGICAL SCIENCES↗

SysML Success Tree for DAVINCI In-Situ Campaign Requirements Validation and Redundancy Assessment

The DAVINCI mission will scientifically study the Venusian atmosphere to better understand the current state of the planet and its evolutionary history. This will be accomplished by deploying a descent probe to collect in-situ atmospheric dynamic and spectroscopic measurements, characterize ambient temperatures and pressures during descent, and surface imaging below the cloud layer. To better characterize the DAVINCI In-Situ Campaign, a success tree, developed in the SysML tool, MagicDraw, was created to define the events necessary to have a successful in-situ campaign, for each phase of the campaign. This success tree was also used to validate DAVINCI Program, Mission, and Element level requirements. In addition, because DAVINCI is a single-string mission, the success tree was also used to identify areas of redundancy and resiliency throughout the campaign. The initial redundancy assessment recommended further on-orbit evaluation of the probe’s communication system, as well as further evaluation of the ability of the mass spectrometer turbo-molecular pump to handle the expected decent environment. During the integration and test phase of the overall mission, the success tree will be used to guide the mission validation process, helping to ensure that the in-situ mission elements can perform in accordance with the DAVINCI In-Situ Concept of Operations document.

model-based↗

SysML Success Tree for DAVINCI In-Situ Campaign Requirements Validation and Redundancy Assessment

The DAVINCI mission will scientifically study the Venusian atmosphere to better understand the current state of the planet and its evolutionary history. This will be accomplished by deploying a descent probe to collect in-situ atmospheric dynamic and spectroscopic measurements, characterize ambient temperatures and pressures during descent, and surface imaging below the cloud layer. To better characterize the DAVINCI In-Situ Campaign, a success tree, developed in the SysML tool, MagicDraw, was created to define the events necessary to have a successful in-situ campaign, for each phase of the campaign. This success tree was also used to validate DAVINCI Program, Mission, and Element level requirements. In addition, because DAVINCI is a single-string mission, the success tree was also used to identify areas of redundancy and resiliency throughout the campaign. The initial redundancy assessment recommended further on-orbit evaluation of the probe’s communication system, as well as further evaluation of the ability of the mass spectrometer turbo-molecular pump to handle the expected decent environment. During the integration and test phase of the overall mission, the success tree will be used to guide the mission validation process, helping to ensure that the in-situ mission elements can perform in accordance with the DAVINCI In-Situ Concept of Operations document.

ConOps↗

SysML Success Tree for DAVINCI In-Situ Campaign Requirements Validation and Redundancy Assessment

The DAVINCI mission will scientifically study the Venusian atmosphere to better understand the current state of the planet and its evolutionary history. This will be accomplished by deploying a descent probe to collect in-situ atmospheric dynamic and spectroscopic measurements, characterize ambient temperatures and pressures during descent, and surface imaging below the cloud layer. To better characterize the DAVINCI In-Situ Campaign, a success tree, developed in the SysML tool, MagicDraw, was created to define the events necessary to have a successful in-situ campaign, for each phase of the campaign. This success tree was also used to validate DAVINCI Program, Mission, and Element level requirements. In addition, because DAVINCI is a single-string mission, the success tree was also used to identify areas of redundancy and resiliency throughout the campaign. The initial redundancy assessment recommended further on-orbit evaluation of the probe’s communication system, as well as further evaluation of the ability of the mass spectrometer turbo-molecular pump to handle the expected decent environment. During the integration and test phase of the overall mission, the success tree will be used to guide the mission validation process, helping to ensure that the in-situ mission elements can perform in accordance with the DAVINCI In-Situ Concept of Operations document.

model-based↗

The genome of Shorea leprosula (Dipterocarpaceae) highlights the ecological relevance of drought in aseasonal tropical rainforests

Hyperdiverse tropical rainforests, such as the aseasonal forests in Southeast Asia, are supported by high annual rainfall. Its canopy is dominated by the species-rich tree family of Dipterocarpaceae (Asian dipterocarps), which has both ecological (e.g., supports flora and fauna) and economical (e.g., timber production) importance. Recent ecological studies suggested that rare irregular drought events may be an environmental stress and signal for the tropical trees. We assembled the genome of a widespread but near threatened dipterocarp, Shorea leprosula, and analyzed the transcriptome sequences of ten dipterocarp species representing seven genera. Comparative genomic and molecular dating analyses suggested a whole-genome duplication close to the Cretaceous-Paleogene extinction event followed by the diversification of major dipterocarp lineages (i.e. Dipterocarpoideae). Interestingly, the retained duplicated genes were enriched for genes upregulated by no-irrigation treatment. These findings provide molecular support for the relevance of drought for tropical trees despite the lack of an annual dry season.

59 BASIC BIOLOGICAL SCIENCES↗

Detectability of Varied Hybridization Scenarios Using Genome-Scale Hybrid Detection Methods

Hybridization events complicate the accurate reconstruction of phylogenies, as they lead to patterns of genetic heritability that are unexpected under traditional, bifurcating models of species trees. This phenomenon has led to the development of methods to infer these varied hybridization events, both methods that reconstruct networks directly, as well as summary methods that predict individual hybridization events from a subset of taxa. However, a lack of empirical comparisons between methods – especially those pertaining to large networks with varied hybridization scenarios – hinders their practical use. Here, we provide a comprehensive review of popular summary methods: TICR, MSCquartets, HyDe, Patterson’s D-Statistic (ABBA-BABA), D3, and Dp. TICR and MSCquartets are based on quartet concordance factors gathered from gene tree topologies and HyDe, Patterson’s D-Statistic, D3, and Dp use site pattern frequencies to identify hybridization events between sets of three taxa. We then use simulated data to address questions of method accuracy and ideal use scenarios by testing methods against complex networks which depict gene flow events that differ in depth (timing), quantity (single vs. multiple, overlapping hybridizations), and rate of gene flow (γ). We find that deeper or multiple hybridization events may introduce noise and weaken the signal of hybridization, leading to higher relative false negative rates across all methods. Despite some forms of hybridization eluding quartet-based detection methods, MSCquartets displays high precision in most scenarios. While HyDe results in high false negative rates when tested on hybridizations involving extinct or unsampled ghost lineages, HyDe is the only method able to identify the direction of hybridization, distinguishing the source parental lineages from recipient hybrid lineages. Lastly, we test the methods on a dataset of ultraconserved elements from the bee subfamily Nomiinae, finding possible hybridization events between clades which correspond to regions of poor support in the species tree estimated in a previous study.

Bjorner, Marianne B.↗

Failure prediction and estimation of failure parameters

Machine-learning methods and apparatus are disclosed to determine frictional state or other parameters in an earthquake zone or other failing medium, using acoustic emission, seismic waves, or other detectable indicators of microscopic processes. Predictions of future failures are demonstrated in different regimes. A classifier is trained using time series of acoustic emission data along with historic data of frictional state or failure events. In disclosed examples, random forests and gradient boost trees are used, and grid-search or EGO procedures are used for hyperparameter tuning. Once trained, the classifier can be applied to testing or live data in order to assess a frictional state, assess seismic hazard, or make predictions regarding a future failure event. The technology has been developed in a double direct shear apparatus, but can be widely applied to seismic faults, other terrestrial failures, or failures in man-made structures. Variations are disclosed.

Johnson, Paul Allan↗

Tree architectural characteristics and stem and leaf functional traits for 17 individuals in the Central Amazon

Given recent increases in tree mortality rates in the Amazon forest following extreme drought and wind events, we tested if lower wood density and acquisitive plant functional traits were associated with increased growth and mortality for common co-occurring trees in the Central Amazon. Research was conducted at the ZF2 Research Station located north or Manaus, Brazil, managed by the Instituto Nacional de Pesquisas da Amazônia (INPA). Seventeen trees of different species with similar sizes but a range in wood density (WD) and wood traits were felled, then assessed for 27 different individual functional parameters, including whole tree architecture, stem xylem anatomical and hydraulic traits and leaf traits. Wood logs were collected at DBH, 50% stem length and at 100% stem length (at the base of the canopy). For wood anatomy samples, n=3-6 subsamples from each height. For leaf samples, 30 leaves were collected from the upper sunlit canopy. The methodology is detailed in the accompanying manuscript. The trait data are summarized in this file: "Trait_Summary.CSV". Summary Trait code abbreviations and units are described in this file: "Sample_Info_Traits_Summary.CSV". Stem traits measured along the bole from the base of the tree (DBH, diameter breast height), mid-stem, and base of the canopy are described in these files: "Sapwood_Area_height.CSV"; "Species_Info_height.CSV"; "Sample_Info_height.CSV"

54 ENVIRONMENTAL SCIENCES↗

Mortality correlates with tree functional traits across a wood density gradient in the Central Amazon

Introduction: Understanding the mechanisms of tree mortality in tropical ecosystems remains challenging, in part due to the high diversity of tree species and the inherently stochastic nature of mortality. Plant functional traits offer a mechanistic link between plant physiology and performance, yet their ability to predict growth and mortality remains poorly understood. Given recent increases in tree mortality rates in the Amazon forest following extreme drought and wind events, we tested if lower wood density and acquisitive plant functional traits were associated with increased growth and mortality for common co-occurring trees in the Central Amazon. Methods: Seventeen trees of different species with similar sizes but a range in wood density (WD) and wood traits were felled, then assessed for 27 different individual functional parameters, including whole tree architecture, stem xylem anatomical and hydraulic traits and leaf traits. Traits of the individual trees were related to stand-level growth and mortality rates collected periodically over 30 years from nearby permanent inventory plots. Results: Higher wood density was associated with smaller leaf size, lower foliar base cations, lower stem water content and sapwood fraction, in agreement with the fast-slow plant economics spectrum. Lower wood density was associated with more acquisitive characteristics with greater hydraulic capacity and foliar nutrient concentrations, correlating with greater growth and mortality rates. Discussion: Our results show that lower wood density is part of a coordinated suite of traits linked to high resource acquisition, fast growth, and increased mortality risk, providing a functional framework for predicting species performance and forest vulnerability under future climate stress.

demographics↗

Sensitivity of Optical Satellites to Estimate Windthrow Tree-Mortality in a Central Amazon Forest

Windthrow (i.e., trees broken and uprooted by wind) is a major natural disturbance in Amazon forests. Images from medium-resolution optical satellites combined with extensive field data have allowed researchers to assess patterns of windthrow tree-mortality and to monitor forest recovery over decades of succession in different regions. Although satellites with high spatial-resolution have become available in the last decade, they have not yet been employed for the quantification of windthrow tree-mortality. Here, we address how increasing the spatial resolution of satellites affects plot-to-landscape estimates of windthrow tree-mortality. We combined forest inventory data with Landsat 8 (30 m pixel), Sentinel 2 (10 m), and WorldView 2 (2 m) imagery over an old-growth forest in the Central Amazon that was disturbed by a single windthrow event in November 2015. Remote sensing estimates of windthrow tree-mortality were produced from Spectral Mixture Analysis and evaluated with forest inventory data (i.e., ground true) by using Generalized Linear Models. Field measured windthrow tree-mortality (3 transects and 30 subplots) crossing the entire disturbance gradient was 26.9 ± 11.1% (mean ± 95% CI). Although the three satellites produced reliable and statistically similar estimates (from 26.5% to 30.3%, p < 0.001), Landsat 8 had the most accurate results and efficiently captured field-observed variations in windthrow tree-mortality across the entire gradient of disturbance (Sentinel 2 and WorldView 2 produced the second and third best results, respectively). As expected, mean-associated uncertainties decreased systematically with increasing spatial resolution (i.e., from Landsat 8 to Sentinel 2 and WorldView 2). However, the overall quality of model fits showed the opposite pattern. We suggest that this reflects the influence of a relatively minor disturbance, such as defoliation and crown damage, and the fast growth of natural regeneration, which were not measured in the field nor can be captured by coarser resolution imagery. Our results validate the reliability of Landsat imagery for assessing plot-to-landscape patterns of windthrow tree-mortality in dense and heterogeneous tropical forests. Satellites with high spatial resolution can improve estimates of windthrow severity by allowing the quantification of crown damage and mortality of lower canopy and understory trees. However, this requires the validation of remote sensing metrics using field data at compatible scales.

54 ENVIRONMENTAL SCIENCES↗

Manned space flight nuclear system safety. Volume 3: Reactor system preliminary nuclear safety analysis. Part 2: Accident Model Document (AMD)

The Accident Model Document is one of three documents of the Preliminary Safety Analysis Report (PSAR) - Reactor System as applied to a Space Base Program. Potential terrestrial nuclear hazards involving the zirconium hydride reactor-Brayton power module are identified for all phases of the Space Base program. The accidents/events that give rise to the hazards are defined and abort sequence trees are developed to determine the sequence of events leading to the hazard and the associated probabilities of occurence. Source terms are calculated to determine the magnitude of the hazards. The above data is used in the mission accident analysis to determine the most probable and significant accidents/events in each mission phase. The only significant hazards during the prelaunch and launch ascent phases of the mission are those which arise form criticality accidents. Fission product inventories during this time period were found to be very low due to very limited low power acceptance testing.

Source record↗

Developing Empirical Lightning Cessation Forecast Guidance for the Cape Canaveral Air Force Station and Kennedy Space Center

This research addresses the 45th Weather Squadron's (45WS) need for improved guidance regarding lightning cessation at Cape Canaveral Air Force Station and Kennedy Space Center (KSC). KSC's Lightning Detection and Ranging (LDAR) network was the primary observational tool to investigate both cloud-to-ground and intracloud lightning. Five statistical and empirical schemes were created from LDAR, sounding, and radar parameters derived from 116 storms. Four of the five schemes were unsuitable for operational use since lightning advisories would be canceled prematurely, leading to safety risks to personnel. These include a correlation and regression tree analysis, three variants of multiple linear regression, event time trending, and the time delay between the greatest height of the maximum dBZ value to the last flash. These schemes failed to adequately forecast the maximum interval, the greatest time between any two flashes in the storm. The majority of storms had a maximum interval less than 10 min, which biased the schemes toward small values. Success was achieved with the percentile method (PM) by separating the maximum interval into percentiles for the 100 dependent storms.

LDAR (LIGHTNING DETECTION AND RANGING)↗

Searching for Neutrino Tridents in the NOvA Near Detector

This dissertation presents a search for neutrino trident production in the NOvA near detector through the coherent ``dimuon" channel: $\nu_\mu +\hspace{1pt}\text{X} \rightarrow \nu_\mu + \mu^- + \mu^+ +\hspace{1pt}\text{X}$. Trident production is a rare, purely electroweak process with sensitivity to physics beyond the Standard Model. The theoretical background, motivation for studying the process, and previous experimental measurements are reviewed. The analysis uses data collected by the NOvA near detector (ND) from Fermilab's Neutrinos at the Main Injector (NuMI) beam between November 2014 and February 2024, corresponding to an exposure of $25.5\times 10^{20}$ protons on target. The ND is a segmented tracking calorimeter located 800~m from the beam target, receiving neutrinos with a mean energy of 2~GeV. A multi-pass background reduction strategy is implemented, including the development of a novel dimuon-specific tracking technique. Trident candidates are identified using a boost ed decision tree classifier trained on simulated signal and background events. Limited background Monte Carlo statistics necessitate the use of functional fits to sideband data, which are extrapolated to estimate backgrounds in the signal region. The unblinded data contain 9 trident-like events, with an estimated background of 5.66 $\pm$ 5.15 events. This yields a best fit estimate of 3.34 tridents compared to the Standard Model prediction of 4.66. A profiled Feldman-Cousins method is used to determine a 90\% confidence interval of [0,9.1] on the number of signal events, corresponding to an upper limit of 1.95$\times$ the Standard Model prediction. This result represents the lowest energy search for trident events to date, and the first experimental contribution to the process in 27 years.

Bowles, Reed Scott [Indiana U.]↗

Magnetic tunnel junction random number generators applied to dynamically tuned probability trees driven by spin orbit torque

Abstract Perpendicular magnetic tunnel junction (pMTJ)-based true-random number generators (RNGs) can consume orders of magnitude less energy per bit than CMOS pseudo-RNGs. Here, we numerically investigate with a macrospin Landau–Lifshitz-Gilbert equation solver the use of pMTJs driven by spin–orbit torque to directly sample numbers from arbitrary probability distributions with the help of a tunable probability tree. The tree operates by dynamically biasing sequences of pMTJ relaxation events, called ‘coinflips’, via an additional applied spin-transfer-torque current. Specifically, using a single, ideal pMTJ device we successfully draw integer samples on the interval [0, 255] from an exponential distribution based on p -value distribution analysis. In order to investigate device-to-device variations, the thermal stability of the pMTJs are varied based on manufactured device data. It is found that while repeatedly using a varied device inhibits ability to recover the probability distribution, the device variations average out when considering the entire set of devices as a ‘bucket’ to agnostically draw random numbers from. Further, it is noted that the device variations most significantly impact the highest level of the probability tree, with diminishing errors at lower levels. The devices are then used to draw both uniformly and exponentially distributed numbers for the Monte Carlo computation of a problem from particle transport, showing excellent data fit with the analytical solution. Finally, the devices are benchmarked against CMOS and memristor RNGs, showing faster bit generation and significantly lower energy use.

77 NANOSCIENCE AND NANOTECHNOLOGY↗