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At least 145 records · Page 8

A new scheme for the parameterization of the turbulent planetary boundary layer in the GLAS fourth order GCM

Methods being used to increase the horizontal and vertical resolution and to implement more sophisticated parameterization schemes for general circulation models (GCM) run on newer, more powerful computers are described. Attention is focused on the NASA-Goddard Laboratory for Atmospherics fourth order GCM. A new planetary boundary layer (PBL) model has been developed which features explicit resolution of two or more layers. Numerical models are presented for parameterizing the turbulent vertical heat, momentum and moisture fluxes at the earth's surface and between the layers in the PBL model. An extended Monin-Obhukov similarity scheme is applied to express the relationships between the lowest levels of the GCM and the surface fluxes. On-line weather prediction experiments are to be run to test the effects of the higher resolution thereby obtained for dynamic atmospheric processes.

Helfand, H. M.↗

Hybrid Quantum-Classical Neural Network for Calculating Ground State Energies of Molecules

We present a hybrid quantum-classical neural network that can be trained to perform electronic structure calculation and generate potential energy curves of simple molecules. The method is based on the combination of parameterized quantum circuits and measurements. With unsupervised training, the neural network can generate electronic potential energy curves based on training at certain bond lengths. To demonstrate the power of the proposed new method, we present the results of using the quantum-classical hybrid neural network to calculate ground state potential energy curves of simple molecules such as H 2 , LiH, and BeH 2 . The results are very accurate and the approach could potentially be used to generate complex molecular potential energy surfaces.

74 ATOMIC AND MOLECULAR PHYSICS↗

The SRG/eROSITA All-Sky Survey: Constraints on the structure growth from cluster number counts

Recent advancements in methods used in wide-area surveys have demonstrated the reliability of the number density of galaxy clusters as a viable tool for precision cosmology. Beyond testing the current cosmological paradigm, cluster number counts can also be used to investigate the discrepancies currently affecting cosmological measurements. In particular, cosmological studies based on cosmic shear and other large-scale structure probes routinely find a value for the amplitude of the fluctuations in the universe S​ 8 = σ 8 (Ω m /0.3) 0.5 smaller than the one inferred from the primary cosmic microwave background. In this work, we investigate this tension by measuring structure evolution across cosmic time as probed by the number counts of massive halos with the first SRG/eROSITA All-Sky Survey cluster catalog in the western Galactic hemisphere, complemented with the overlapping Dark Energy Survey Year-3, Kilo-Degree Survey, and Hyper Suprime-Cam data for weak lensing mass calibration, by implementing two different parameterizations and a model-agnostic method. In the first model, we measured the cosmic linear growth index as γ = 1.19 ± 0.21, which is in tension with the standard value of γ = 0.55 but in good statistical agreement with other large-scale structure probes. The second model is a phenomenological scenario in which we rescale the linear matter power spectrum at low redshift to investigate a potential reduction of structure formation, and it provided similar results. Finally, in a third strategy, we considered a standard ΛCDM cosmology, but we separated the cluster catalog into five redshift bins, measuring the cosmological parameters in each and inferring the evolution of the structure formation, finding hints of a reduction. Interestingly, the S ​8 value inferred from the number counts of the cluster eRASS1 when we add a degree of freedom to the matter power spectrum recovers the value inferred by cosmic shear studies. The observed reduction in the growth rate or systematic uncertainties associated with various measurements may account for the discrepancy in the S 8 ​ values suggested between cosmic shear probes and eROSITA cluster number counts and Planck CMB measurements.

cosmological parameters↗

CASM — A software package for first-principles based study of multicomponent crystalline solids

CASM is a software package that enables first-principles based studies of crystalline materials. It has been designed to treat coupled chemical, mechanical, vibrational, and magnetic degrees of freedom to determine ground state and finite temperature properties of crystals. The symmetry of the underlying parent crystal structure is used to enumerate perturbations of the parent crystal structure and generate derivative structures which can be input to first-principles calculations in order to explore the ground state energy landscape. CASM algorithmically constructs cluster expansions that fully couple discrete and continuous degrees of freedom, and generates highly efficient code to evaluate the cluster expansion basis functions. Widely used machine learning methods are integrated for fitting expansion coefficients to first-principle calculations. The fully parameterized cluster expansions can be combined with (kinetic) Monte Carlo methods to calculate finite temperature thermodynamic and kinetic properties. CASM Alloy Manager identifies distinct parent crystal structures in an alloy system, creating individual projects for each, and integrating the results. The integrated infrastructure facilitates the linkage between first-principles statistical mechanics predictions with higher length scale computational methods, such as phase field simulations. In conclusion, CASM projects are designed to be easy to share in repositories, to re-use, and to extend to include additional chemical species or types of degrees of freedom.

36 MATERIALS SCIENCE↗

Laser Disdrometer Quantities (LDQUANTS) and Video Disdrometer Quantities (VDISQUANTS) Value-Added Products Report

Disdrometers are useful instruments that measure the distribution of raindrop sizes (drop size distribution: DSD) and the associated rainfall rates/accumulation as those raindrops fall to the ground. These DSDs are a quantity of interest to members of the modeler and observational communities. However, use of disdrometer data for model evaluation, radar monitoring, or other activities requires careful quality control and processing for key DSD properties of interest (e.g., the number concentration of drops) to ensure appropriate physical (scattering, fall speed) assumptions. The U.S. Department of Energy Atmospheric Radiation Measurement (ARM) Laser Disdrometer Quantities and Video Disdrometer Quantities Value-Added Product (LDQUANTS/VDISQUANTS VAP) uses standard methods from Tokay et al. (e.g., 2013, 2014) to filter drops with unrealistic fall speeds. Further, it estimates several microphysical/geophysical quantities of parameterized DSDs (gamma or exponential assumption type fitting methods) as in previous disdrometer studies and ARM long-term efforts (e.g., Testud et al. 2001, Giangrande et al. 2014, Thompson et al. 2015). Disdrometers are also beneficial for cross-checks with other instrumentation, including rain gauges and radars. To support research interests and related radar monitoring activities, this product calculates radar equivalent quantities, including dual polarization radar quantities (e.g., Z, Differential Reflectivity ZDR, etc.), using T-Matrix scattering and additional wavelength, temperature, and drop shape assumptions (e.g., Thurai et al. 2007). All of these efforts allow disdrometer data sets to become more useful and easily handled by modeling and observational studies, or routine instrumentation checks.

47 OTHER INSTRUMENTATION↗

Implementation of a practical Markov chain Monte Carlo sampling algorithm in PyBioNetFit

Abstract Summary Bayesian inference in biological modeling commonly relies on Markov chain Monte Carlo (MCMC) sampling of a multidimensional and non-Gaussian posterior distribution that is not analytically tractable. Here, we present the implementation of a practical MCMC method in the open-source software package PyBioNetFit (PyBNF), which is designed to support parameterization of mathematical models for biological systems. The new MCMC method, am, incorporates an adaptive move proposal distribution. For warm starts, sampling can be initiated at a specified location in parameter space and with a multivariate Gaussian proposal distribution defined initially by a specified covariance matrix. Multiple chains can be generated in parallel using a computer cluster. We demonstrate that am can be used to successfully solve real-world Bayesian inference problems, including forecasting of new Coronavirus Disease 2019 case detection with Bayesian quantification of forecast uncertainty. Availability and implementation PyBNF version 1.1.9, the first stable release with am, is available at PyPI and can be installed using the pip package-management system on platforms that have a working installation of Python 3. PyBNF relies on libRoadRunner and BioNetGen for simulations (e.g. numerical integration of ordinary differential equations defined in SBML or BNGL files) and Dask.Distributed for task scheduling on Linux computer clusters. The Python source code can be freely downloaded/cloned from GitHub and used and modified under terms of the BSD-3 license (https://github.com/lanl/pybnf). Online documentation covering installation/usage is available (https://pybnf.readthedocs.io/en/latest/). A tutorial video is available on YouTube (https://www.youtube.com/watch?v=2aRqpqFOiS4&t=63s). Supplementary information Supplementary data are available at Bioinformatics online.

59 BASIC BIOLOGICAL SCIENCES↗

A rule based computer aided design system

A Computer Aided Design (CAD) system is presented which supports the iterative process of design, the dimensional continuity between mating parts, and the hierarchical structure of the parts in their assembled configuration. Prolog, an interactive logic programming language, is used to represent and interpret the data base. The solid geometry representing the parts is defined in parameterized form using the swept volume method. The system is demonstrated with a design of a spring piston.

Premack, T.↗

Improving Lightning NO(x) Parameterizations for Global Chemical Transport Models

Parameterization of lightning NO(x) in global chemical transport models requires a method to specify the temporal and geographic distribution of flash rates, an estimate of NO production per flash, and a method to specify the effective vertical distribution of NO production. Flash rate parameterizations using the upward convective cloud mass flux have been developed and tested for several GCM and assimilated meteorological data sets. This parameterization and others involving the cloud-top height and convective precipitation provide a generally acceptable climatological distribution of flashes after normalization with satellite data. However, considerable improvement in terms of geographic and temporal variability may be achieved in the future using cloud microphysics data available from next-generation GCMs. Cloud-resolving case-study simulations of convective transport and lightning NO production have yielded results which are directly applicable to the NO production per flash and the vertical NO distribution portions of the global model lightning parameterizations. In this work we have used cloud-resolving models (the Goddard Cumulus Ensemble Model (GCE) and MM5) to drive an off-line cloud-scale chemical transport model (CSCTM). The CSCTM, in conjunction with aircraft measurements of NO(x) in thunderstorms and ground-based lightning observations, has been used to constrain the amount of NO produced per flash. Observed lightning flash rates have been incorporated into the CSCTM, and several scenarios of NO production per intracloud (IC) and per cloud-to-ground (CG) flash have been tested in each of several case study storms. The resulting NO(x) mixing ratios are compared with aircraft measurements taken within the storm (typically the anvil region) to determine the most likely NO production scenario. The range of values of NO production per flash (or per meter of lightning channel length) that have been deduced from the model will be shown and compared with values of production in the literature that have been deduced from observed NO spikes and from anvil flux calculations. Results show that on a per flash basis, IC flashes are nearly as productive of NO as CG flashes. Estimates of mean NO production per flash vary by a factor of three from one simulated storm to another. Vertical profiles of lightning NOx mass at the end of the 3-D storm simulations have been summarized to yield suggested profiles for use in global models. These profiles show a larger percentage of the total lightning NO(x) mass in the free troposphere than those suggested by Pickering et al. (1998).

Pickering, Kenneth E.↗

Stable Simulation of the Community Atmosphere Model Using Machine‐Learning Physical Parameterization Trained With Experience Replay

In recent years, machine learning (ML) models have been used to improve physical parameterizations of general circulation models (GCMs). A significant challenge of integrating ML models into GCMs is the online instability when they are coupled for long‐term simulation. We present a new strategy that demonstrates robust online stability when the physical parameterization package of an atmospheric GCM is replaced by a deep ML model. The method uses experience replay with a multistep training scheme of the ML model in which the model's own output at the previous time step is used in the training. Predicted physics tendencies in the replay buffer with the most recent errors in the training iterations are reused, making the ML model learn from its own errors. The training method reduces the gap between the offline and online environments of the ML model. The method is used to train the ML model as the physical parameterization of the Community Atmosphere Model (CAM5) with training data from the Multi‐scale Modeling Framework high resolution simulations. Three 6‐year online simulations of the CAM5 are carried out by using the ML physics package. The simulated spatial distributions of precipitation, surface temperature and zonally averaged atmospheric fields demonstrate overall better accuracy than that of the standard CAM5 and benchmark model even without the use of additional physical constraints or tuning. This work is the first to demonstrate a solution to address the online instability problem in climate modeling with ML physics by using experience replay.

54 ENVIRONMENTAL SCIENCES↗

Transient Resonances in EMRIs: A Scalar Toy Model

We present calculations of the scalar self-force for a scalar point-charge following different $r\theta$-resonant geodesics in Kerr spacetime. Using this scalar model, we present two methods for constructing the self-force for resonant sources using two different phase parameterizations of the point-particle motion. We relate these two methods via a simple shifting relation that holds for both the scalar and gravitational self-forces. We discuss how this shifting relation allows us to compare self-force results both at and away from resonances. Finally, we provide new evidence that conservative scalar perturbations can drive the leading-order evolution of the orbital dynamics during resonances (i.e., the orbit-averaged rate of change of the Carter constant depends on contributions from the conservative self-force). This evidence conflicts with a commonly assumed conjecture that these integrated conservative contributions should vanish during both resonant and non-resonant motion.

Zachary Nasipak↗

A scheme for parameterizing ice cloud water content in general circulation models

A method for specifying ice water content in GCMs is developed, based on theory and in-cloud measurements. A theoretical development of the conceptual precipitation model is given and the aircraft flights used to characterize the ice mass distribution in deep ice clouds is discussed. Ice water content values derived from the theoretical parameterization are compared with the measured values. The results demonstrate that a simple parameterization for atmospheric ice content can account for ice contents observed in several synoptic contexts.

Heymsfield, Andrew J.↗

A simplified, efficient approach to hybrid wind and solar plant site optimization

Abstract. Wind plant layout optimization is a difficult, complex problem with a large number of variables and many local minima. Layout optimization only becomes more difficult with the addition of solar generation. In this paper, we propose a parameterized approach to wind and solar hybrid power plant layout optimization that greatly reduces problem dimensionality while guaranteeing that the generated layouts have a desirable regular structure. Thus far, hybrid power plant optimization research has focused on system sizing. We go beyond sizing and present a practical approach to optimizing the physical layout of a wind–solar hybrid power plant. We argue that the evolution strategy class of derivative-free optimization methods is well-suited to the parameterized hybrid layout problem, and we demonstrate how hard layout constraints (e.g., placement restrictions) can be transformed into soft constraints that are amenable to optimization using evolution strategies. Next, we present experimental results on four test sites, demonstrating the viability, reliability, and effectiveness of the parameterized evolution strategy approach for generating optimized hybrid plant layouts. Completing the tool kit for parameterized layout generation, we include a brief tutorial describing how the parameterized evolutionary approach can be inspected, understood, and debugged when applied to hybrid plant layouts.

14 SOLAR ENERGY↗

On the remote sensing of cloud properties from satellite infrared sounder data

A method for remote sensing of cloud parameters by using infrared sounder data has been developed on the basis of the parameterized infrared transfer equation applicable to cloudy atmospheres. The method is utilized for the retrieval of the cloud height, amount, and emissivity in 11 micro m region. Numerical analyses and retrieval experiments have been carried out by utilizing the synthetic sounder data for the theoretical study. The sensitivity of the numerical procedures to the measurement and instrument errors are also examined. The retrieved results are physically discussed and numerically compared with the model atmospheres. Comparisons reveal that the recovered cloud parameters agree reasonably well with the pre-assumed values. However, for cases when relatively thin clouds and/or small cloud fractional cover within a field of view are present, the recovered cloud parameters show considerable fluctuations. Experiments on the proposed algorithm are carried out utilizing High Resolution Infrared Sounder (HIRS/2) data of NOAA 6 and TIROS-N. Results of experiments show reasonably good comparisons with the surface reports and GOES satellite images.

Yeh, H. Y. M.↗

Study of stability of large maneuvers of airplanes

A predictive method of nonlinear system analysis is used to investigate airplane stability and dynamic response during rolling maneuvers. The maneuver roll-rate is not assumed to be constant, and the airplane motion is represented by a set of coupled nonlinear differential equations. The general rolling maneuver is kinematically specified by its roll-rate variation p(t). A method for relating the airplane dynamic response to p(t) is developed. The method provides analytical expressions for the motion variables in terms of the maneuver descriptor p(t). A parameterized family of rolling maneuvers is considered, for which the method is used to predict specific dynamic response information, such as the dependence of the peak angle-of-attack excursion on the maneuver parameters. The stability and motion of the airplane in response to an arbitrary actuation of aileron input is considered. Analytical expressions relating motion variables to aileron input are obtained. Explicit analytical bounds on the motion variables are derived. A stability criterion which guarantees nondivergence of motion in response to aileron actuation is presented.

Haddad, E. K.↗

Fast Computational Algorithms for Partial Differential Equations and Uncertainty Quantifications

This project concerned the construction, testing and analysis of computational algorithms for solving parameterized and stochastic partial differential equations. The study and understanding of equations of this type is of fundamental importance in numerous engineering and scientific applications. Examples include simulation of plasma dynamics in models of electric propulsion and nuclear fusion, simulation of multiphase flows, such as the flow of water, gas and oil in reservoirs, and structural analysis of the dependence of structures on materials. Parametrization is used in such settings when properties of the models such as viscosity of fluids or electric resistivity of materials are not precisely understood and instead are treated as random variables. The resulting solutions are themselves random, and having such solutions will enable engineers to use probabilistic methods to assess the likelihood of events, for example, whether a pollutant in a liquid will exceed a limit, and to use such analyses to develop ways to ensure positive outcomes. Construction of accurate (high resolution) computational solutions is expensive, requiring significant computer time and computational resources, and there is need to reduce computational cost to make simulation useful and effective. The aim of the project was to construct algorithms to efficiently compute surrogate solutions to parameterized problems to allow for efficient and accurate simulation. The technical approach used focused on two related strategies, based on rank-reduction methods and reduced-order models. These methods construct surrogate solutions of parameter-dependent models by projection or interpolation into low-dimensional approximation spaces. Cost savings are achieved if the low-dimensional spaces can be identified and constructed efficiently and if the resulting low-dimensional algebraic systems can be solved cheaply. Accomplishments include: Theoretical and empirical demonstration of the effectiveness of fast multigrid solution strategies for computing low-rank representations of parameter-dependent solutions to discrete partial differential equations, including the first proof establishing so-called textbook convergence properties for low-rank methods. Development of efficient solution algorithms for solving nonlinear parameter-dependent partial differential equations used in models of fluid dynamics. Developent of efficient algorithms for low-rank representation of solutions of time-dependent simulations of fluid dynamics using multi-dimensional tensor representations of solutions.

97 MATHEMATICS AND COMPUTING↗

A physically based fractional cloudiness parameterization

A bulk PBL model with a simple internal vertical structure and a simple second-order closure has been developed for use as a PBL parameterization in a large-scale model. A method to determine the value of sigma, the fractional area covered by rising motion, is given. Large-eddy simulations of Moeng (1984, 1986) are used to validate various aspects of the parameterization.

Randall, David A.↗

Application of Low Dimensional Manifolds in NO(x) Prediction

A new post-processing technique has been developed, based on the Intrinsic Low Dimensional Manifold (ILDM) method of Maas and Pope. The ILDM method is a dynamical systems approach to the simplification of large chemical kinetic mechanisms. By identifying low-dimensional attracting manifolds, the method allows complex full mechanisms to be parameterized by just a few variables: In effect, generating reduced chemical mechanisms by an automatic procedure. These resulting mechanisms however, still retain all the species used in the full mechanism. The NO(x) post-processor takes an ILDM reduced mechanism and attempts to map this mechanism to the results of a CFD calculation. This mapping allows the NO(x) concentrations at each grid node to be obtained from the ILDM reduced mechanism, as well as other trace species of interest. Because a mapping procedure is used, this method is very fast, being able to process one million node calculations in just a few minutes.

Norris, A. T.↗

Validation of parameterization scheme for eddy diffusion from satellite data

The eddy diffusion coefficient K(yy) has been calculated usign LIMS for the months of December 1978 and January and February 1979. Two methods have been used. The first implements the suggestion made by Tung (1987) to parameterize the eddy transport as a diffusive process along isentropes. The second method integrates the equation relating the parcel displacements to the eddy velocity fields. The latter method uses a filtering on both space and time domains to isolate transients and is referred to as the 'spectral method'. Results from the first method are shown to be reliable only for quiescent periods, breaking down when the meridional gradient of potential vorticity is negligible. Results from the two methods are in agreement only for very disturbed conditions, when transience is readily isolated. It is concluded that the parameterizations suggested for eddy transport and calculated in this paper may be meaningful for quiet periods, but are not reliable for unsteady and very large amplitude disturbances.

Sassi, F.↗