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At least 145 records · Page 8

Phylodynamics of SARS-CoV-2 Lineages B.1.1.7, B.1.1.529 and B.1.617.2 in Nigeria Suggests Divergent Evolutionary Trajectories

Background: The early months of the COVID-19 pandemic were characterized by high transmission rates and mortality, compounded by the emergence of multiple SARS-CoV-2 lineages, including Variants of Concern (VOCs). This study investigates the phylodynamic and spatio-temporal trends of VOCs during the peak of the pandemic in Nigeria. Methods: Whole-genome sequencing (WGS) data from three major VOCs circulating in Nigeria, B.1.1.7 (Alpha), B.1.617.2 (Delta), and B.1.1.529 (Omicron), were analyzed using tools such as Nextclade, R Studio v 4.2.3, and BEAST X v 10.5.0. The spatial distribution, evolutionary history, viral ancestral introductions, and geographic dispersal patterns were characterized. Results: Three major lineages following WHO nomenclature were identified: Alpha, Delta, and Omicron. The Delta variant exhibited the widest geographic spread, detected in 14 states, while the Alpha variant was the least distributed, identified in only eight states but present across most epidemiological weeks studied. Evolutionary rates varied slightly, with Alpha exhibiting the slowest rate (2.66 × 10 −4 substitutions/site/year). Viral population analyses showed distinct patterns: Omicron sustained elevated population growth over time, while Delta declined after initial expansion. The earliest Times to Most Recent Common Ancestor (TMRCA) were consistent with the earliest outbreaks of SARS-CoV-2 globally. Geographic transmission analysis indicated a predominant coastal-to-inland spread for all variants, with Omicron showing the most diffuse dispersal, highlighting commercial routes as significant drivers of viral diffusion. Conclusion: The SARS-CoV-2 epidemic in Nigeria was characterized by multiple variant introductions and a dominant coastal-to-inland spread, emphasizing that despite lockdown measures, commercial trade routes played a critical role in viral dissemination. These findings provide insights into pandemic control strategies and future outbreak preparedness.

Nigeria↗

Single-Dose Immunogenic DNA Vaccines Coding for Live-Attenuated Alpha- and Flaviviruses

Single-dose, immunogenic DNA (iDNA) vaccines coding for whole live-attenuated viruses are reviewed. This platform, sometimes called immunization DNA, has been used for vaccine development for flavi- and alphaviruses. An iDNA vaccine uses plasmid DNA to launch live-attenuated virus vaccines in vitro or in vivo. When iDNA is injected into mammalian cells in vitro or in vivo, the RNA genome of an attenuated virus is transcribed, which starts replication of a defined, live-attenuated vaccine virus in cell culture or the cells of a vaccine recipient. In the latter case, an immune response to the live virus vaccine is elicited, which protects against the pathogenic virus. Unlike other nucleic acid vaccines, such as mRNA and standard DNA vaccines, iDNA vaccines elicit protection with a single dose, thus providing major improvement to epidemic preparedness. Still, iDNA vaccines retain the advantages of other nucleic acid vaccines. In summary, the iDNA platform combines the advantages of reverse genetics and DNA immunization with the high immunogenicity of live-attenuated vaccines, resulting in enhanced safety and immunogenicity. This vaccine platform has expanded the field of genetic DNA and RNA vaccines with a novel type of immunogenic DNA vaccines that encode entire live-attenuated viruses.

60 APPLIED LIFE SCIENCES↗

Retrospective on Recent DOE-Funded Studies Concerning the Extraction of Rare Earth Elements & Lithium from Geothermal Brines (Final Report)

Rare earth elements (REE) and lithium are non-toxic metals that are considered critical materials due to their use in electronics, magnets, batteries, and a wide variety of industrial processes important for the economy and military preparedness. Demand for REE and lithium is increasing and these critical materials are imported, so identifying and exploiting domestic sources of REE and lithium is a national priority. The U.S. Department of Energy (DOE) Geothermal Technologies Office (GTO) has been in the forefront of sponsoring research investigating the potential recovery of REE, lithium, and other critical minerals from geothermal brines. It has been proposed that the future of geothermal energy should include “hybrid systems” that combine electricity generation with other revenue-generating activities, such as recovery of valuable and critical minerals, including REE and lithium. Two recent GTO funding opportunities have focused on the recovery of REE and other valuable minerals from geothermal brines. The research supported by the GTO’s mineral recovery program is focused on three areas: resource characterization, technology for the extraction of REE, and technology for the extraction of lithium (Tables 1 and 2). This report is a retrospective study examining the outcome of GTO’s two recent mineral recovery programs (DE-FOA-0001016 in FY 2014 and DE-FOA-0001376 in FY 2016). In this report, the knowledge, technology, and techniques that were developed by researchers funded by GTO are summarized and discussed. Four projects were funded to assess the concentrations and amounts of REE found in geothermal brines and oil field produced waters. The GTO-funded studies compiled publically available data on REE concentrations from brines and produced water from all over the USA. In addition, new samples were collected and characterized from major geothermal and hydrocarbon basins in the Western USA. The studies examined the relationship between lithology and REE concentrations and developed models examining the influence of geology on REE concentrations in produced brines. It was determined that REE are frequently found at higher concentrations in oil field produced water than geothermal brines, but that some geothermal areas had significant REE resources. Significant reservoirs of REE were identified in the Western USA. In some cases, concentrations of REE were more than 1000 times the concentrations found in seawater. Collectively, these studies represent a comprehensive picture of REE resources associated with geothermal and hydrocarbon systems in the USA. The studies did not examine lithium resources, but in some cases, lithium concentration data was collected. Data from these studies are housed in the Geothermal Data Repository (GDR) and represent a significant information resource and it is recommended that these data be further analyzed in a future study. Eight projects were funded to develop new technology for REE extraction from geothermal fluids. These projects investigated sorption as an approach for removal and recovery of REE from geothermal brines. The projects investigated cutting-edge technology for selective sorption of ions from complex solutions, including the application of metal-organic frameworks and biosorbent proteins. The REE sorption studies tested different combinations of metal-binding ligands and solid supports. The most promising metal-binding ligands for REE included phosphonic acid, thiol, and carboxylic acid functional groups. Ligands were attached or incorporated into a wide variety of solid supports. In most cases, attachment was via covalent bonding to organic resins, polymers, or silica-based supports. Most of the REE projects were conducted at a low technology readiness level (TRL) and showed promise, but direct comparison between technologies was not possible based on the available information. It is recommended that testing and reporting be standardized to the extent possible to facilitate comparisons between technologies. Two projects were directed at novel lithium extraction technology. Both projects investigated the use of inorganic sorbents, including manganese oxides. One study also examined the use of metal- ion imprinted polymers as selective ion-exchange resins for the separation of lithium and manganese from brines. Both approaches showed promise for the selective extraction of lithium from brines, including potentially geothermal brines. Results from these GTO studies indicated that selective REE and lithium extraction is possible, but interference from co-occurring solutes, such as calcium, magnesium, or heavy metals, will interfere with process efficiency and negatively impact process economics. Techno-economic analysis conducted as part of the resource and technology studies suggest extraction of REE from geothermal brines is unlikely to be economically viable, especially since non-geothermal produced waters frequently have higher REE concentrations. It is recommended that benchmarks for techno-economic analysis be established to the extent possible for future studies, to facilitate direct comparison of various technologies. Based on the collective results of this program, it appears that hybrid geothermal power would benefit more from recovery of lithium and other metals, rather than REE. It is recommended that future studies be conducted at a higher- TRL and that sorbents be tested against actual geothermal fluid samples. Prior higher-TRL efforts to extract metals from geothermal brines should be further evaluated for lessons learned.

36 MATERIALS SCIENCE↗

Detecting flash drought events to inform adaptive water management

Abstract: Flash droughts are characterized by a rapid onset of drought conditions, a common feature among various indicators of these events. The lack of a standardized definition and indicator makes flash droughts particularly challenging to predict and manage. We test six state-of-the-art flash drought indicators using 41 years of daily data across all Hydrological Unit Code 4 (HUC4) regions in the contiguous United States. Our results show substantial disagreements among indicators, suggesting that the detection of a flash drought event strongly depends on the choice of indicator. From the perspective of informing management and operations, an open challenge remains: which flash drought indicator should be used to trigger operational adaptations? To this end, we propose a methodological framework that informs adaptive actions by regionally assessing the level of agreement between different indicators. The regional differences in hydroclimatic conditions are expected to be reflected in the level of agreement between indicators. To better inform adaptive actions, the framework will also consider the impacted sectoral water uses and their varying response times. The insights gained from this study improve the understanding of how these different flash drought indicators capture the different aspects of regional differences and impacted sectors. Furthermore, this information can support more targeted adaptive actions to mitigate adverse impacts through improved preparedness and response strategies.

climate resilience↗

Geothermal Sector Cybersecurity Vulnerability Assessment

A review of geothermal sector-specific cybersecurity vulnerabilities and risks (consequences) was conducted at the request of the Geothermal Technologies Office (GTO). The vulnerabilities and risks reviewed in this study have relevance to achieving the 2019 GeoVision Report (DOE GTO 2019) technological advancements and expected sector growth. The study offers areas for consideration but does not quantify the likelihood (frequency) of the consequences. This cybersecurity analysis project represents a proactive effort to identify areas to enhance cybersecurity in geothermal development and operations. It was not initiated to address any immediate threat or specific known risk. Of the eight identified vulnerabilities analyzed, the review identified reservoir data system monitoring as one that is unique to geothermal systems and may warrant further investigation to better understand risk and mitigation. A detailed analysis of the other vulnerabilities may highlight additional uniqueness relative to other industries. Further research actions are recommended to better quantify risk and enhance cybersecurity preparedness of the sector. As the geothermal industry grows, the cybersecurity strategies to be deployed will be of increasing importance to ensure resilient, reliable, and secure clean energy for years to come.

cyber-physical security↗

AMS INTERNATIONAL TECHNICAL EXCHANGES - IAEA-CN293-047

The IAEA Conference on the Development of Preparedness for National and International Emergency Response 2021. The purpose of the event is to foster the exchange of information and enhance global awareness on various EPR topics through the discussion of both the progress made at national and international levels and the challenges encountered, by sharing experiences, evaluating current trends, technologies and lessons in EPR

99 GENERAL AND MISCELLANEOUS↗

Interacting with the COVID virus model in VR environment

The Disaster Response Complex at Idaho State University (ISU) hosts an annual Disaster Preparedness and Response Conference which will give a bird's eye view of disasters and pandemics in the U.S. We'll demonstrate virtual reality (VR) and augmented reality (AR) capabilities at the conference. This VR demo displays the structure and components of the COVID virus model, and let users to interact with it in an immersive environment. The 3D model used in this demo is open source and downloaded from this site: https://sketchfab.com/GLS.

3D↗

BioSecure Digital Twin: Manufacturing Innovation and Cybersecurity Resilience

U.S. national security, prosperity, economy, and well-being require secure, flexible, and resilient Biopharmaceutical Manufacturing. The COVID-19 pandemic reaffirmed that the biomedical production value-chain is vulnerable to disruption and has been under attack from sophisticated nation-state adversaries. Current cyber defenses are inadequate, and the integrity of critical production systems and processes are inherently vulnerable to cyber-attacks, human error, and supply chain disruptions. The following chapter explores how a BioSecure Digital Twin will improve U.S. manufacturing resilience and preparedness to respond to these hazards by significantly improving monitoring, integrity, security, and agility of our manufacturing infrastructure and systems. The BioSecure Digital Twin combines a scalable manufacturing framework with a robust platform for monitoring and control to increase U.S. biopharma manufacturing resilience. Then, the chapter discusses some of the inherent vulnerabilities and challenges at the nexus of health and advanced manufacturing. Next, the chapter highlights that as the Pandemic evolves, we need agility and resilience to overcome significant obstacles. This section highlights an innovative application of Cyber Informed Engineering to developing and deploying a BioSecure Digital Twin to improve the resilience and security of the biopharma industrial supply chain and production processes. Finally, the chapter concludes with a process framework to complement the Digital Twin platform, called the Biopharma (Observe, Orient, Decide, Act) OODA Loop Framework (BOLF), a four-step approach to decision-making outputs from the Digital Twin. The BOLF will help end users leverage twin technology by distilling the available information, focusing the data on context, and rapidly making the best decision while remaining cognizant of changes that can be made as more data becomes available.

99 GENERAL AND MISCELLANEOUS↗

Decarbonization in Climate Resilience Planning

Recent executive orders such as E.O. 14008 require federal agencies to address climate change by enhancing resilience and reducing emissions through decarbonization. Traditionally, federal agencies require their sites to develop preparedness plans, such as continuity of operations plans and/or more comprehensive resilience plans. When climate change is included in these plans, the focus tends to be on climate adaptation solutions such as hardening infrastructure and not on climate mitigation through decarbonization. However, with the ambitious emission reductions targets set out by the federal government, it is essential to provide resources and tools to support energy and water managers in achieving decarbonization goals. To achieve this, there is a need for decarbonization to be incorporated into existing resilience planning processes. We discuss a method of incorporating a decarbonization analysis into an existing resilience planning process to create a holistic framework that considers climate adaptation, climate mitigation, and risk reduction priorities when developing and prioritizing solutions for federal sites. Site managers and decision makers must be aware of potential opportunities and trade-offs in meeting energy and water performance goals, emission reductions goals, and climate adaptation goals when developing technological, operational, or institutional resilience solutions. By combining these processes, energy and water managers can minimize the additional level of effort to ensure that their sites are not only able to withstand climate-related energy and water disruptions, but also contribute to climate mitigation. A holistic approach can help federal agencies serve as a model for incorporating decarbonization strategies into site-level resilience planning for the rest of the nation.

Elliott, Douglas B.↗

Exercise Design Guidance for Solar Cybersecurity

The intent of this resource is to provide recommendations on how State Energy Offices and Public Utility Commissions might design an energy emergency exercise, drill, or other simulation focused on solar cybersecurity scenarios . Exercise practitioners, planners, or facilitators interested in exploring solar cybersecurity incident response, preparedness, recovery, or mitigation may find this a valuable resource . This is an advanced supplementary resource for persons or entities with prior exercise experience and knowledge . It should not be used as a baseline educational resource for how to conduct and evaluate an exercise . It is based on a set of standard concepts, terms, and procedures that are common among the exercise community . This tool may be referenced in conjunction with the Hypothetical Solar Cyberattack Scenarios and Impacts tool within the CATSS Toolkit

14 SOLAR ENERGY↗

Geographic Information System Based Emergency Response Training Assessments for DOE Radioactive Materials Transport - 20027

Safety and security are priorities of U.S. Department of Energy (DOE) radioactive materials shipping campaigns. In the more than 70-year history of domestic transport of spent nuclear fuel (SNF), there has never been a transportation-related radiological injury. To support transportation planning, among the tools that DOE uses is the Stakeholder Tool for Assessing Radioactive Transportation (START). START contains geospatial data and transportation route analyses capabilities designed to support a range of DOE transportation planning initiatives. One of those functions is the capability to support emergency response planning and training for State and Tribal jurisdictions located on routes used for DOE shipments of radioactive materials. As part of the Department's commitment to public safety, DOE provides federally-funded radiological response training to emergency responders along DOE radioactive materials transportation corridors through its Transportation Emergency Preparedness Program (TEPP). START contains spatial data representing the locations and emergency-response capabilities of fire departments, police, hospitals, State emergency response centers, and where TEPP-trained personnel are based. The START tool supports State and Tribal users' ability to evaluate emergency-response coverage on active and potential DOE radioactive materials transport routes through their jurisdictions, provide expected response times to reach the scene of an incident, identify equipment available to support a response, and identify the number of response personnel and their respective training levels. In addition, START can be used to identify gaps in coverage along a transportation corridor where additional radiological emergency response training may be needed. This paper describes the data, features, and functionality DOE uses to provide a resource for emergency response training needs assessments for States and Tribes along active and potential routes for transporting radioactive materials, and illustrates its use. It also discusses future plans to integrate TEPP and Federal Emergency Management Agency (FEMA) radiological training data to provide a more comprehensive source of geospatial information on personnel who have received equivalent radiological response training. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Development of the Mobile Systems for Conditioning of Disused Sealed Radioactive Sources in Serbia - 20105

Sealed radioactive sources (SRS) are being used worldwide in the field of medicine, agriculture, industry and research. They can be found in mobile as well as stationary devices. SRS contains radioactive material that is (a) permanently sealed in a capsule or (b) closely bounded and in a solid form. The capsule or material of an SRS should be strong enough to maintain leak tightness under the conditions of use and purpose for which the source was designed, also in case of accidents. In this case only emitted radiation is utilized. Firstly, the hazard from external radiation has to be considered, but the possibility of contamination due to fracture of the capsule should not be disregarded. The radioactive sources are composed of the radiating isotope contained in the filling medium, the single or double isotope holder that partially or totally surrounds the filling medium, the outer cover that contains the parts mentioned above and the capsule closed airtightly by welding or using some other method. The capsule must be tested for leakage periodically. If the SRS is no longer needed (e.g. replaced by a different technique) or it becomes useless for the intended application (e.g. the activity becomes too weak, the equipment containing the source works poorly or becomes obsolete, the source is damaged or leaking) it is considered disused. Disused sealed radioactive sources (DSRS) are typically conditioned and disposed if a facility is available. If the disposal option is not available, conditioned DSRS should be stored under proper conditions. In some cases, the radionuclide(s) in DSRS can be recovered/recycled or the DSRS can be repurposed for other applications. Conditioning of DSRS ensures containment of the radioactive material, provides confinement for leaking sources, provides sufficient radiation shielding, reduces storage/disposal volume by allowing consolidation of multiple sources into a single storage/disposal container, facilitates transport operations and contributes to safety and security as well. Typically, conditioning technologies are deployed either as permanently installed stationary systems in centralized or mobile on-site waste processing facilities, or in a mobile configuration. Centralized stationary facilities provide a single processing location for multiple users that requires transport of the waste to the facility. On the other hand, mobile systems may be provided for the selection and application of the optimum technology for a specific waste stream (such as DSRS) by bringing the process to the point where the waste is generated. In addition, mobile systems could offer additional flexibility by sharing equipment among multiple waste generating sites for processing campaigns that vary in duration, from very short periods to several years. The term 'mobile processing system' refers to any radioactive waste processing system or component which is designed to be transportable and which is not considered permanently installed. Two mobile system for conditioning of disused sealed radioactive sources are developed in the Public Company Nuclear Facilities of Serbia. Development of these mobile systems was supported by SRB9005 national project via Technical Cooperation of the IAEA. The first mobile system, built inside the 20 feet ISO container, will be used for conditioning of DSRS category 3 to 5. The second mobile system, built inside the 7 m long vehicle (Iveco Daily Van), will be used for dismantling of ionizing smoke detectors mostly with Am-241 sources. Designs of the mobile systems were defined in cooperation with two companies from Belgium (Belgoprocess and Leniko) and a Croatian company Ekoteh as well as with the support of the IAEA experts. The generic safety assessment and operational procedures for the mobile systems are developed. Based on safety assessment the acceptance criteria and operational limits and conditions are established. Operational procedures include: (a) equipment and material requirements, (b) assembling procedure of the mobile unit, (c) procedure for acceptance of devices for dismantling and conditioning, (d) dismantling procedure for devices to recover the DSRS, (e) characterization of DSRS, (f) encapsulation procedure of DSRS, (g) disassembling procedure of the mobile unit, and (h) keeping records, identification and traceability. In addition, radiation safety, health safety, security and emergency preparedness plans are prepared. The generic safety assessment and operational procedures could be updated with site specific requirements, DSRS inventory, and different needs for future customers. Developed mobile systems could be used in all situations when it is feasible to perform conditioning of DSRS on the spot in the county and worldwide. Development of these mobile units was just the first step to create the Reference Center for Radioactive Waste Treatment and Disused Radioactive Sources Conditioning for Small Facilities which can become a regional training center in the future, and/or as a tool for comprehensive national search and secure programmes. In the next phases development of e-learning platforms and blended learning packages as well as application for the IAEA Qualified Technical Centre (QTC) for the management of DSRS is foreseen. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Storm-DEPART (Damage Estimate Prediction and Recovery Tool)

Storm-DEPART (Damage Estimate Prediction and Restoration Tool): Each year hurricanes and tropical storms in the United States damage critical infrastructure assets, disrupt the services they provide, and cause millions to billions of dollars in economic impacts due to extended recovery times. The Storm-DEPART tool and analytical output enable more impactful data-driven decision-making capabilities and strengthen national-level disaster preparedness, response, and recovery. Storm-DEPART, built through multi-month collaboration between Entergy and INL, combines Entergy’s critical infrastructure inventory data with weather forecasts to predict damages to Electric utility’s assets due to natural disasters and the estimated recovery support needed, including time, materials, and resource allocation. In the event of an approaching hurricane, this innovative solution can assess potential damage to power generation capacity, transmission grids, distribution networks, and communications assets from wind bands, storm surge, and flooding. With more effective predictions, Entergy can more efficiently allocate resources to mitigate impacts and optimize recovery for customers. Storm-DEPART also allows Electric utilities the ability to apply a planning scenario and model expected damage to better inform infrastructure restoration needs leading to enhance system resiliency. The technology is fully transferrable to other electric utilities with the same damage estimating challenges. The INL team is working on the evolution of Storm-DEPART to include ice event damage prediction framework.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Storm-DEPART (Damage Estimate Prediction and Recovery Tool)

Storm-DEPART (Damage Estimate Prediction and Restoration Tool): Each year hurricanes and tropical storms in the United States damage critical infrastructure assets, disrupt the services they provide, and cause millions to billions of dollars in economic impacts due to extended recovery times. The Storm-DEPART tool and analytical output enable more impactful data-driven decision-making capabilities and strengthen national-level disaster preparedness, response, and recovery. Storm-DEPART, built through multi-month collaboration between Entergy and INL, combines Entergy’s critical infrastructure inventory data with weather forecasts to predict damages to Electric utility’s assets due to natural disasters and the estimated recovery support needed, including time, materials, and resource allocation. In the event of an approaching hurricane, this innovative solution can assess potential damage to power generation capacity, transmission grids, distribution networks, and communications assets from wind bands, storm surge, and flooding. With more effective predictions, Entergy can more efficiently allocate resources to mitigate impacts and optimize recovery for customers. Storm-DEPART also allows Electric utilities the ability to apply a planning scenario and model expected damage to better inform infrastructure restoration needs leading to enhance system resiliency. The technology is fully transferrable to other electric utilities with the same damage estimating challenges. The INL team is working on the evolution of Storm-DEPART to include ice event damage prediction framework.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Consequence Management Asset Overview

Presentation summarizing DOE Consequence Management assets available to support state, local, territorial, and tribal partners during a radiological emergency. This presentation will be given at various state engagements, including training and outreach for ingestion pathway exercises, national and regional CM exercises, and trainings for radiological emergency preparedness events as requested.

61 RADIATION PROTECTION AND DOSIMETRY↗

Emergency Management of Tomorrow: Emerging Technologies and Concepts

This article for the Domestic Preparedness Journal introduces the Emergency Management of Tomorrow Research Program and its role exploring artificial intelligence for emergency management and emergency operation centers in the future.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Opportunities for Artificial Intelligence in Emergency Management

This article for the Domestic Preparedness Journal highlights how PNNL's in-depth landscape assessment dug deep into research articles, preprints, code repositories, and surveys at the intersection of applied artificial intelligence and emergency management.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗