Search NASA⌕ Search

SEARCH · Search NASA

Results for “Principal component analysis”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 145 records · Page 8
All sourcesNASA NTRSDOE OSTI
NASA NTRS2013

Spectral Comparison and Stability of Red Regions on Jupiter

A study of absolute color on Jupiter from Hubble Space Telescope imaging data shows that the Great Red Spot (GRS) is not the reddest region of the planet. Rather, a transient red cyclone visible in 1995 and the North Equatorial Belt both show redder spectra than the GRS (i.e., more absorption at blue and green wavelengths). This cyclone is unique among vortices in that it is intensely colored yet low altitude, unlike the GRS. Temporal analysis shows that the darkest regions of the NEB are relative constant in color from 1995 to 2008, while the slope of the GRS core may vary slightly. Principal component analysis shows several spectral components are needed, in agreement with past work, and further highlights the differences between regions. These color differences may be indicative of the same chromophore(s) under different conditions, such as mixing with white clouds, longer UV irradiation at higher altitude, and thermal processing, or may indicate abundance variations in colored compounds. A single compound does not fit the spectrum of any region well and mixes of multiple compounds including NH4SH, photolyzed NH3, hydrocarbons, and possibly P4, are likely needed to fully match each spectrum.

cyclonic↗
NASA NTRSDate not supplied

Principal Component and Machine Learning Approach to Gap Fill Hyperspectral Ocean Color Satellite Retrievals

Retrievals of ocean color properties from space are important for monitoring the health of the ocean ecosystem but such retrievals can be limited spatially due to conditions such as clouds, aerosols, and sun glint. Gap filling of ocean color retrievals is typically performed by combining retrievals from multiple satellites or temporally averaging multiple days of retrievals. Despite these techniques large gaps still exist posing challenges for near real time monitoring of events like harmful algae blooms. To address these limitations, we developed a spatial gap filling approach applying machine learning approach to hyperspectral instruments to learn how to perform an atmospheric correction under challenging retrieval conditions. In this approach a principal component analysis is used to decompose the hyperspectral measurements into spectral components that describe the scattering and absorption of the atmosphere mixed with the surface spectral signatures. The coefficients of the principal components are used to train a neural network to predict ocean color properties derived from a standard MODIS ocean color algorithm. We apply the approach to two hyperspectral UV/VIS sensors, the Ozone Monitoring Instrument (OMI) and TROPOspheric Monitoring Instrument (TROPOMI) to show that it can be used to estimate ocean color properties such as chlorophyll, remote sensing reflectance, and fluorescence line height. This method could be used as a gap-filling technique for the future Ocean Color Instrument (OCI) onboard upcoming NASA's Plankton, Aerosol Cloud, ocean Ecosystem (PACE) satellite to provide additional information for monitoring the health of our global oceans. Additionally, it could be applied to the first NASA and Smithsonian geostationary Tropospheric Emissions: Monitoring of Pollution (TEMPO) spectrometer to better understand diurnal variability in inland and coastal ocean ecology.

Zachary Fasnacht↗
NASA NTRS1984

Applications of array processors in the analysis of remote sensing images

The architectures, programming characteristics, and ranges of application of past, present, and planned array processors for the digital processing of remote-sensing images are compared. Such functions as radiometric and geometric corrections, principal-components analysis, cluster coding, histogram generation, grey-level mapping, convolution, classification, and mensuration and modeling operations are considered, and both pipeline-type and single-instruction/multiple-data-stream (SIMD) arrays are evaluated. Numerical results are presented in a table, and it is found that the pipeline-type arrays normally used with minicomputers increase their speed significantly at low cost, while even further gains are provided by the more expensive SIMD arrays. Most image-processing operations become I/O-limited when SIMD arrays are used with current I/O devices.

Ramapriyan, H. K.↗
NASA NTRSDate not supplied

Evaluation of Correction Methods for NASA GeneLab Transcriptomic Datasets

Conducting space biology experiments aboard the International Space Station, particularly those utilizing complex model organisms like mice, is expensive and difficult due to limited crew availability, hardware, and space. As a result, sample numbers from these studies are low, reducing the statistical power of any one experiment. Aggregating spaceflight datasets serves as a method to increase sample numbers, allowing for novel insights through bioinformatic analysis of ‘omics data from merged datasets. However, aggregating datasets can introduce unwanted variation including 1) differences in sample handling, processing, and sequencing platforms between datasets (technical variation) as well as 2) differences in experimental design between datasets such as sex or age of the model organism used. In the present study, NASA GeneLab-hosted RNAseq datasets from rodent liver tissues were used to evaluate several statistical methods to correct for this unwanted variation through two approaches, reference-based and standard. The following correction algorithms were applied with (reference-based) and/or without (standard) considering Universal Mouse RNA Reference samples: ComBat and ComBat_seq from the SVA package, median polish, empirical Bayes, and ANOVA-based algorithms from the MBatch package, and negative binomial regression normalization in the DESeq2 package. For each approach, after the correction algorithm was applied, differential gene expression (DGE) analysis of flight and ground control samples was performed with the combined data. The robustness of each tool was evaluated using BatchQC, to determine statistical differences between datasets before and after correction, Principal Component Analysis, to evaluate global gene expression in samples before and after correction, and by comparing DGE analysis of individual datasets and combined datasets before and after correction. The results showed that the reference-based approach introduced several additional (and likely artificial) DEGs when compared with the standard approach. Thus, the most robust standard correction will be implemented in the GeneLab Visualization 2.0 platform when datasets are combined.

GeneLab, RNA-seq, Batch Correction↗
NASA NTRSDate not supplied

Evaluation of Correction Methods for NASA GeneLab Transcriptomic Datasets

Conducting space biology experiments aboard the International Space Station, particularly those utilizing complex model organisms like mice, is expensive and difficult due to limited crew availability, hardware, and space. As a result, sample numbers from these studies are low, reducing the statistical power of any one experiment. Aggregating spaceflight datasets serves as a method to increase sample numbers, allowing for novel insights through bioinformatic analysis of ‘omics data from merged datasets. However, aggregating datasets can introduce unwanted variation including 1) differences in sample handling, processing, and sequencing platforms between datasets (technical variation) as well as 2) differences in experimental design between datasets. In the present study, NASA GeneLab-hosted RNAseq datasets from mouse liver tissues were used to evaluate several statistical methods to correct for this unwanted variation through two approaches, reference-based and standard. The following correction algorithms were applied with (reference-based) and/or without (standard) considering Universal Mouse RNA Reference samples: ComBat and ComBat_seq from the SVA package, median polish, empirical Bayes, and ANOVA-based algorithms from the MBatch package, and negative binomial regression normalization in the DESeq2 package. For each approach, after the correction algorithm was applied, differential gene expression (DGE) analysis of flight and ground control samples was performed with the combined data. The robustness of each tool was evaluated using BatchQC to determine statistical differences between datasets before and after correction, Principal Component Analysis to evaluate global gene expression in samples before and after correction, and by comparing DGE analysis of individual datasets and combined datasets before and after correction. The results showed that the reference-based approach introduced several additional (and likely artificial) DEGs when compared with the respective standard approach. Of the methods tested, standard ComBat and DESeq2 were identified as the most robust correction methods for combining spaceflight mouse liver RNAseq datasets hosted on GeneLab.

GeneLab↗
NASA NTRSDate not supplied

Combining RNA-SEQ Datasets from NASA GENELAB: An Evaluation of Correction Methods

Background: Conducting space biology experiments aboard the International Space Station, particularly those utilizing complex model organisms like mice, is expensive and difficult due to limited crew availability, hardware, and space. As a result, sample numbers from these studies are low, reducing the statistical power of any one experiment. Aggregating spaceflight datasets serves as a method to increase sample numbers, allowing for novel insights through bioinformatic analysis of ‘omics data from merged datasets. However, aggregating datasets can introduce unwanted variation including 1) differences in sample handling, processing, and sequencing platforms between datasets (technical variation) as well as 2) differences in experimental design between datasets. Methods: In the present study, NASA GeneLab-hosted RNAseq datasets from mouse liver tissues were used to evaluate several statistical methods to correct for this unwanted variation through two approaches, reference-based and standard. The following correction algorithms were applied with (reference-based) and/or without (standard) considering Universal Mouse RNA Reference samples: ComBat and ComBat_seq from the SVA package, the median polish, empirical Bayes, and ANOVA-based algorithms from the MBatch package, and negative binomial regression normalization in the DESeq2 package. For each approach, after the correction algorithm was applied, differential gene expression (DGE) analysis of flight and ground control samples was performed with the combined data. The robustness of each tool was evaluated using BatchQC to determine statistical differences between datasets before and after correction, Principal Component Analysis to evaluate global gene expression in samples before and after correction, and by comparing DGE analysis of individual datasets and combined datasets before and after correction. Results: The results showed that the reference-based approach introduced several additional (and likely artificial) differentially expressed genes when compared with the respective standard approach. Conclusions: Of the methods tested, standard ComBat_seq and DESeq2 were identified as the most robust correction methods for combining spaceflight mouse liver RNAseq datasets hosted on GeneLab.

Finsam Samson↗
NASA NTRSDate not supplied

Investigating the Impacts of Land Use Change on Urban Heat and Vulnerability in Cali, Columbia

The urban heat island effect (UHI) is an environmental phenomenon where cities experience higher temperatures than rural areas due to increased pavement and decreased cooling from vegetation. Approximately 76% of people in Colombia live in urban areas, and the city of Santiago de Cali is facing UHI challenges exacerbated by land use change. Wetlands and forests formerly surrounded the city but were replaced by development and agriculture. The Colombian municipal government agency Departamento Administrativo de Gestión del Medio Ambiente and the community organization Fundacion Dinamizadores Ambientales partnered with NASA DEVELOP to evaluate communities in Cali most vulnerable to urban heat. This project illustrated the utility of using NASA Earth observations to evaluate the relationship between land use, temperature, and social factors in Cali, Colombia between 2013 and 2023. The team used Landsat 7 Enhanced Thematic Mapper Plus (ETM+), Landsat 8 Operational Land Imager (OLI) and Thermal Infrared Sensor (TIRS), and Landsat 9 OLI-2/TIRS-2 to generate land surface temperature (LST), normalized difference vegetation index (NDVI), and albedo maps in Google Earth Engine. Heavy cloud cover limited the accuracy of the LST but incorporating up to three satellites for a median image reduced potential errors. Through further analysis in ArcGIS Pro, the team classified land use change using a deep learning model and found that LST was significantly higher in urban areas than in wetlands or forests. Using R studio, the team ran a principal component analysis to determine which social factors had the strongest correlation with LST. The team found that health care and green space access were negatively correlated, and Afro-Colombian ethnicity was positively correlated with LST. With awareness of the most impacted and vulnerable regions, the partner organizations can work to prioritize green space establishment in those areas to reduce the impacts of urban heat. Addressing the urban heat island effect will reduce environmental justice concerns within the city and improve overall health, air, and water quality for those who live there.

Brenna Bruffey↗
NASA NTRS2022

A New Machine Learning Based Analysis for Improving Satellite Retrieved Atmospheric Composition Data: OMI SO2 as an Example

Despite recent progress, satellite retrievals of anthropogenic SO2 still suffer from relatively low signal-tonoise ratios. In this study, we demonstrate a new machine learning data analysis method to improve the quality of satellite SO2 products. In the absence of large ground-truth datasets for SO2, we start from SO2 slant column densities (SCDs) retrieved from the Ozone Monitoring Instrument (OMI) using a data-driven, physically based algorithm and calculate the ratio between the SCD and the root mean square (rms) of the fitting residuals for each pixel. To build the training data, we select presumably clean pixels with small SCD / rms ratios (SRRs) and set their target SCDs to zero. For polluted pixels with relatively large SRRs, we set the target to the original retrieved SCDs. We then train neural networks (NNs) to reproduce the target SCDs using predictors including SRRs for individual pixels, solar zenith, viewing zenith and phase angles, scene reflectivity, and O3 column amounts, as well as the monthly mean SRRs. For data analysis, we employ two NNs: (1) one trained daily to produce analyzed SO2 SCDs for polluted pixels each day and (2) the other trained once every month to produce analyzed SCDs for less polluted pixels for the entire month. Test results for 2005 show that our method can significantly reduce noise and artifacts over background regions. Over polluted areas, the monthly mean NN-analyzed and original SCDs generally agree to within ±15 %, indicating that our method can retain SO2 signals in the original retrievals except for large volcanic eruptions. This is further confirmed by running both the NN-analyzed and original SCDs through a topdown emission algorithm to estimate the annual SO2 emissions for ∼ 500 anthropogenic sources, with the two datasets yielding similar results. We also explore two alternative approaches to the NN-based analysis method. In one, we employ a simple linear interpolation model to analyze the original SCD retrievals. In the other, we develop a PCA–NN algorithm that uses OMI measured radiances, transformed and dimension-reduced with a principal component analysis (PCA) technique, as inputs to NNs for SO2 SCD retrievals. While the linear model and the PCA–NN algorithm can reduce retrieval noise, they both underestimate SO2 over polluted areas. Overall, the results presented here demonstrate that our new data analysis method can significantly improve the quality of existing OMI SO2 retrievals. The method can potentially be adapted for other sensors and/or species and enhance the value of satellite data in air quality research and applications.

Can Li↗
NASA NTRS1993

The El Nino/Southern Oscillation and Future Soybean Prices

Recently, it was shown that the application of a method combining singular spectrum analysis (SSA) and the maximum entropy method to univariate indicators of the coupled ocean-atmosphere El Nino/Southern Oscillation (ENSO) phenomenon can be helpful in determining whether an El Nino (EN) or La Nina (LN) event will occur. SSA - a variant of principal component analysis applied in the time domain - filters out variability unrelated to ENSO and separates the quasi-biennial (QB), two-to-three year variability, from a lower-frequency (LF) four-to-six year EN-LN cycle; the total variance associated with ENSO combines the QB and LF modes. ENSO has been known to affect weather conditions over much of the globe. For example, EN events have been connected with unusually rainy weather over the Central and Western US, while the opposite phases of the oscillation (LN) have been plausibly associated with extreme dry conditions over much of the same geographical area...

Keppenne, C.↗
NASA NTRS2020

Statistical Analysis of Factors Riving Surface Ozone Variability over Continental South Africa

Statistical relationships between surface ozone (O3) concentration, precursor species and meteorological conditions in continental South Africa were examined from data obtained from measurement stations in north-eastern South Africa. Three multivariate statistical methods were applied in the investigation, i.e. multiple linear regression (MLR), principal component analysis (PCA) and –regression (PCR), and generalised additive model (GAM) analysis. The daily maximum 8-h moving average O3 concentrations were considered in these statistical models (dependent variable). MLR models indicated that meteorology and precursor species concentrations are able to explain ~50% of the variability in daily maximum O3 levels. MLR analysis revealed that atmospheric carbon monoxide (CO), temperature and relative humidity were the strongest factors affecting the daily O3 variability. In summer, daily O3 variances were mostly associated with relative humidity, while winter O3 levels were mostly linked to temperature and CO. PCA indicated that CO, temperature and relative humidity were not strongly collinear. GAM also identified CO, temperature and relative humidity as the strongest factors affecting the daily variation of O3. Partial residual plots found that temperature, radiation and nitrogen oxides most likely have a non-linear relationship with O3,while the relationship with relative humidity and CO is probably linear. An inter-comparison between O3 levels modelled with the three statistical models compared to measured O3 concentrations showed that the GAM model offered a slight improvement over the MLR model. These findings emphasise the critical role of regional-scale O3 precursors coupled with meteorological conditions in daily variances of O3 levels in continental South Africa.

multiple linear regression (MLR)↗
NASA NTRSDate not supplied

Training and Validation of Spectral Gap Filling Algorithm for Cpf-Ceres Intercalibration

The Climate Absolute Radiance and Refractivity Observatory (CLARREO) Pathfinder (CPF) mission is set to launch an SI-traceable reflective solar (RS) spectrometer aboard the International Space Station to measure Earth-reflected solar radiation with a radiometric uncertainty of 0.3% (k=1). The CPF intercalibration team has devised a cutting-edge methodology to accurately transfer the benchmark CPF calibration reference to the shortwave (SW) channel (200-5000 nm) of the Clouds and the Earth’s Radiant Energy System (CERES) instrument. The spectral range of CPF measurements spans from 350-2300 nm, while the CERES SW channel measures the Earth-reflected broadband solar radiances between 200 nm to 5 μm. To conduct precise CPF-CERES intercalibration analysis, the CPF-like spectral radiances outside the CPF spectral range need to be estimated to match the CERES SW spectral range. In response, the team has developed a fast algorithm that leverages spectrally redundant information within the CPF-measured portion through principal component analysis (PCA) and utilizes pre-established spectral correlation relationships among wavelengths to extend the CPF spectrum below 350 nm and above 2300 nm. Our results show that the algorithm achieves excellent accuracy in generating the missing energy in the UV and IR portions. The RMS error in the UV region is less than 4.5x10-3 W/m2/sr/nm, while in the IR region, it is smaller than 8x10-5 W/m2/sr/nm. Our methodology was validated using measured EMIT radiance data, which covers the spectral range from 0.381 μm to 2.493 μm. We employed EMIT radiances within the wavelength range of 0.43 – 2.25 μm to generate radiances for both the shorter wavelength range (0.381 – 0.43 μm) and longer wavelength range (2.25 – 2.493 μm). The generated radiances agree very well with the measured EMIT radiances. The standard deviation in the integrated broadband radiances was about 0.1%, and the bias is less than 0.004% for over 1.5 million EMIT measured samples. These statistics show that the spectral gap filling algorithm is robust and effective in substantially reducing the spectral difference-induced uncertainty in the CPF-CERES intercalibration samples.

Qiguang Yang↗
NASA NTRS2010

Soil Components in Heterogeneous Impact Glass in Martian Meteorite EETA79001

Martian soil composition can illuminate past and ongoing near-surface processes such as impact gardening [2] and hydrothermal and volcanic activity [3,4]. Though the Mars Exploration Rovers (MER) have analyzed the major-element composition of Martian soils, no soil samples have been returned to Earth for detailed chemical analysis. Rao et al. [1] suggested that Martian meteorite EETA79001 contains melted Martian soil in its impact glass (Lithology C) based on sulfur enrichment of Lithology C relative to the meteorite s basaltic lithologies (A and B) [1,2]. If true, it may be possible to extract detailed soil chemical analyses using this meteoritic sample. We conducted high-resolution (~0.3 m/pixel) element mapping of Lithology C in thin section EETA79001,18 by energy dispersive spectrometry (EDS). We use these data for principal component analysis (PCA).

Schrader, C. M.↗
NASA NTRS1991

Regional climate change predictions from the Goddard Institute for Space Studies high resolution GCM

A new diagnostic tool is developed for examining relationships between the synoptic scale circulation and regional temperature distributions in GCMs. The 4 x 5 deg GISS GCM is shown to produce accurate simulations of the variance in the synoptic scale sea level pressure distribution over the U.S. An analysis of the observational data set from the National Meteorological Center (NMC) also shows a strong relationship between the synoptic circulation and grid point temperatures. This relationship is demonstrated by deriving transfer functions between a time-series of circulation parameters and temperatures at individual grid points. The circulation parameters are derived using rotated principal components analysis, and the temperature transfer functions are based on multivariate polynomial regression models. The application of these transfer functions to the GCM circulation indicates that there is considerable spatial bias present in the GCM temperature distributions. The transfer functions are also used to indicate the possible changes in U.S. regional temperatures that could result from differences in synoptic scale circulation between a 1XCO2 and a 2xCO2 climate, using a doubled CO2 version of the same GISS GCM.

Crane, Robert G.↗
NASA NTRS1991

Thematic Conference on Geologic Remote Sensing, 8th, Denver, CO, Apr. 29-May 2, 1991, Proceedings. Vols. 1 & 2

The proceedings contain papers discussing the state-of-the-art exploration, engineering, and environmental applications of geologic remote sensing, along with the research and development activities aimed at increasing the future capabilities of this technology. The following topics are addressed: spectral geology, U.S. and international hydrocarbon exporation, radar and thermal infrared remote sensing, engineering geology and hydrogeology, mineral exploration, remote sensing for marine and environmental applications, image processing and analysis, geobotanical remote sensing, and data integration and geographic information systems. Particular attention is given to spectral alteration mapping with imaging spectrometers, mapping the coastal plain of the Congo with airborne digital radar, applications of remote sensing techniques to the assessment of dam safety, remote sensing of ferric iron minerals as guides for gold exploration, principal component analysis for alteration mappping, and the application of remote sensing techniques for gold prospecting in the north Fujian province.

Source record↗
NASA NTRS1982

Analysis of atmosphere-sea ice interactions in the Arctic basin using ESMR microwave data

Data from the Electrically Scanning Microwave Radiometer (ESMR) on Nimbus-5 are used to determine the spatial and temporal patterns of change in microwave brightness signatures of Arctic sea ice during a full annual cycle (1973/74). Interactions of ice conditions with the atmosphere are examined using grid point data for surface air temperature and atmospheric pressure. Principal components analysis is used to examine the major elements present in the microwave and atmospheric data. Component scores from these analyses are then used in a canonical correlation analysis to determine interassociations present between the ice and atmosphere in the Beaufort Sea and the European sectors on a synoptic time scale. The synoptic weather conditions associated with the pattern of snow melt on the ice in spring 1974 are described, and a clarification of possible alternative interpretations of features identified as polynyi occurring at 80-85 deg N during the late summer 1974 is presented.

Crane, R. G.↗
NASA NTRS2014

Application of Spectral Analysis Techniques in the Intercomparison of Aerosol Data. Part II: Using Maximum Covariance Analysis to Effectively Compare Spatiotemporal Variability of Satellite and AERONET Measured Aerosol Optical Depth

Moderate Resolution Imaging SpectroRadiometer (MODIS) and Multi-angle Imaging Spectroradiomater (MISR) provide regular aerosol observations with global coverage. It is essential to examine the coherency between space- and ground-measured aerosol parameters in representing aerosol spatial and temporal variability, especially in the climate forcing and model validation context. In this paper, we introduce Maximum Covariance Analysis (MCA), also known as Singular Value Decomposition analysis as an effective way to compare correlated aerosol spatial and temporal patterns between satellite measurements and AERONET data. This technique not only successfully extracts the variability of major aerosol regimes but also allows the simultaneous examination of the aerosol variability both spatially and temporally. More importantly, it well accommodates the sparsely distributed AERONET data, for which other spectral decomposition methods, such as Principal Component Analysis, do not yield satisfactory results. The comparison shows overall good agreement between MODIS/MISR and AERONET AOD variability. The correlations between the first three modes of MCA results for both MODIS/AERONET and MISR/ AERONET are above 0.8 for the full data set and above 0.75 for the AOD anomaly data. The correlations between MODIS and MISR modes are also quite high (greater than 0.9). We also examine the extent of spatial agreement between satellite and AERONET AOD data at the selected stations. Some sites with disagreements in the MCA results, such as Kanpur, also have low spatial coherency. This should be associated partly with high AOD spatial variability and partly with uncertainties in satellite retrievals due to the seasonally varying aerosol types and surface properties.

aerosols↗
NASA NTRS1990

Satellite radar for monitoring forest resources

An evaluation is made of the computer analysis results of a study which used Seasat satellite radar data obtained in 1978 and Shuttle Imaging Radar-B data obtained in 1984. The change-detection procedures employed demonstrate that deforestation and reforestation activities can be effectively monitored on the basis of radar data gathered at satellite altitudes. The computer-processing techniques applied to the data encompassed (1) overlay display, (2) ratios, (3) differences, (4) principal-component analysis, and (5) classification; of these, overlay display is noted to quickly and easily yield a qualitative display of the multidate data.

Hoffer, Roger M.↗
NASA NTRS1976

A computer analysis of ERTS data of the Lake Gregory area of South Australia with particular emphasis on its role in terrain classification for engineering

A digital computer and multivariate statistical techniques were used to analyze 4-band multispectral data. A representation of the original data for each of the four bands allows a certain degree of terrain interpretation; however, variations in appearance of sites within and between bands, without additional criteria for deciding which representation should be preferred, create difficulties for classification. Investigation of the video data groups produced by principal components analysis and cluster analysis techniques shows that effective correlations with classifications of terrain produced by conventional methods could be carried out. The analyses also highlighted underlying relationships between the various elements. The approach used allows large areas (185 cm by 185 cm) to be classified into fundamental units within a matter of hours and can be applied to those parts of the Earth where facilities for conventional studies are poor or lacking.

Lodwick, G. D.↗