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At least 145 records · Page 8

Detailed space–time variations of the seismic response of the shallow crust to small earthquakes from analysis of dense array data

SUMMARY We compute high-resolution space–time variations of subsurface seismic properties from autocorrelation functions (ACF’s) of noise and local earthquakes, recorded by the Sage Brush Flat dense array deployed around the Clark branch of the San Jacinto fault. The resolved temporal changes are referred to as apparent velocity changes because they reflect both nonlinear response and variations of material properties such as cracking and damage. Apparent velocity changes are estimated at four frequency bands (10–15, 10–20, 15–30 and 20–40 Hz) for two local earthquake data sets. In one analysis, ACF’s from P- and S-wave windows of 31 small events with magnitudes below 3.1 are used to compute the apparent velocity variations with respect to the mean ACF of each phase, and we also use the mean ACF of noise data as reference to estimate the changes. In a further analysis, the temporal evolution of properties is computed using moving time windows in continuous waveform over one-hour long data with noise and earthquake signals. The apparent velocity changes and recovery times are frequency dependent and present a strong spatial variability across the array. The resolved changes are larger and recovery time shorter with data associated with higher frequencies. At frequencies larger than 15 Hz, and using the mean ACF of noise data as a reference, the apparent average velocity changes across the array during the passage of the P and S waves from the small local events are 2.5 per cent and 6 per cent, respectively. The apparent velocity changes decrease by one order of magnitude when the earthquake data are used as a reference. The relatively large changes in response to very low ground motion have important implications on nonlinear processes involving degradation and healing of the subsurface material during common earthquake shaking.

Geochemistry & Geophysics↗

Data Summarization and Inference at Scale

This is the final report for the DOE ASCR grant SC-0022260, Data Summarization and Inference at Scale, PI: Alex Pothen, Purdue University. The goal of the project was to solve data-intensive and compute-intensive problems in the physical sciences, engineering, information science, data science, etc. by designing and implementing new algorithms that could work with a subset of the data. The four subgoals were: (a) The solution of problems where the data is too large to be stored in the memory of a computer. In this streaming model of computation, the data arrives as a stream of elements to the computer, each element is processed as it arrives, and a decision is made to discard the data or to store it; only a small subset of the data proportional to the size of the output solution is stored, and when all the data has been streamed, a solution to the problem is computed from the stored subset. (b) The use of machine learning methods to compute solutions to data-intensive problems. The use of GPUs is critical to obtain high performance on machine learning tasks, but their memory sizes are smaller relative to that of CPUs. For large-scale problems, the data is sampled many times, and small samples are used with repetition, for robustness, to compute solutions to inference tasks. This sampling reduces the memory required to solve the problem, but attention is needed to avoid slow convergence to the solutions, and reduced accuracy of inference. We propose submodular optimization, Large Language Models, and physics-informed neural networks to enable GPU computations here. (c) Modeling and visualization of high-dimensional data using interpretable features. Clinical proteomic data sets from immunology for the detection of cancer and other diseases are temporal and high-dimensional, and algorithms for visualizing these data sets using clinically interpretable features are lacking. We propose methods that compute distances based on the optimal transportation problem and graph edit distances to address this problem. We also propose the use of optimal transport-based distances, spatial statistics, and network structure to classify image data sets, We apply these algorithms to electron micrographs of the peripheral nervous system in the digestive tract. (d) The design of data-intensive algorithms on emerging architectures, specifically, noisy, intermediate-scale quantum (NISQ) devices. Quantum computers offer the possibility of exploring large solution spaces due to the principle of superposition, but current quantum computers are limited by few qubits, short coherence times due to noise, poor interconections among the qubits, etc. We propose the use of the divide and conquer paradigm to solve large-scale problems, wherein collections of small subproblems are solved on the quantum devices, and the solutions to the subproblems are integrated into a solution for the original problem on a classical computer.

97 MATHEMATICS AND COMPUTING↗

Collaborative Research: Properties and Dynamics of the Shallow Crust (Final Report)

Ground motions recorded at one location are often extrapolated to nearby regions within a given radius. Here, we explore the appropriateness of spatial extrapolation using data from seven small aperture seismic network deployments in southern California. Six of these deployments are linear arrays of 4-13 stations, and one is a 2D array of 13 stations at Pinyon Flats Observatory. The spatial footprint array diameters are 3 km or less, and each array was operational for a year or more. From our base catalog (M2.5+ earthquakes; 4038 events; September 2010 - June 2023), automated methods remove temporally overprinted waveforms from nearby events (< 5 km) in quick succession (< 5 min) and data with nonviable waveforms. These 200 samples per second data are filtered at 0.5-25 Hz and must have signal-tonoise ratios (SNRs) of 2.5+. Peak ground acceleration (PGA) and peak ground velocity (PGV) are derived individually from the maximum absolute values of each of the 3-component waveforms (vertical, northsouth, and east-west). Five of the seven arrays traverse the San Jacinto fault, and two do not. Ground motion observations are compared with theoretical estimates from Abrahamson et al., 2014. On average, arrays deployed within and across fault zones consistently record ground motions above theoretical expectations, whereas off-fault arrays record ground motions at or slightly below theoretical expectations. We attribute these differences to site conditions because these trends prevail for the full data suites. For each network and each individual channel, the coefficient of variation indicates that the standard deviations are ~30±6% of the mean. Exploring relative ground motion contributions from all three channels (ternary plots), as expected, most data show that vertical ground motions are attenuated compared to horizontal ones. However, this is not always the case for RA array data, where vertical motions can be ~2-3 times larger than horizontal motions for select events near Cahuilla, CA. These anomalously high vertical motions are focal mechanism-related. These results suggest that ternary plots created using only a small amount of data can be used as a data quality metric and a tool to find anomalous features in three-component data.

58 GEOSCIENCES↗

Effects of Strain and Strain Rate on Dynamic Grain Growth and Subgrain Evolution During Plastic Deformation of an Interstitial-Free Steel at 850 ° C

Here, the effects of strain and strain rate on dynamic grain growth (DGG) and subgrain evolution are reported for an interstitial-free steel deformed at 850 ° C. Microstructures produced during tension tests at true-strain rates of 10 -4 and to 10 -3 s -1 true strains ranging from 0.02 to 0.2 were preserved following deformation. These were characterized using electron backscatter diffraction (EBSD), including the application of spherical harmonic transform indexing to produce high-angular-resolution EBSD (HR-EBSD) data. HR-EBSD data resolved the small misorientation angles of subgrain boundaries while imaging much larger data fields than possible with previously available techniques. The resulting data confirmed that steady-state flow stress is inversely proportional to the average subgrain size and that subgrain boundary misorientation angle increases with strain. The following new observations are reported. The rate of DGG increased with respect to time but decreased with respect to strain as strain rate increased. This behavior is rationalized through a simple model using separate rate parameters for the effects of time and strain. Subgrain size was not constant during steady-state deformation, but decreased slowly with increasing strain. Subgrain size distributions and subgrain boundary misorientation angle distributions were measured, and both remained approximately log-normal during steady-state deformation. Subgrain evolution demonstrated no dependence on parent grain size, crystallographic orientation, or Taylor factor. These new data suggest that steady-state flow stress is more likely controlled by the dislocation density internal to subgrains than by the spacing between subgrain boundaries.

dynamic grain growth↗

Representations and strategies for transferable machine learning improve model performance in chemical discovery

Strategies for machine-learning (ML)-accelerated discovery that are general across material composition spaces are essential, but demonstrations of ML have been primarily limited to narrow composition variations. By addressing the scarcity of data in promising regions of chemical space for challenging targets such as open-shell transition-metal complexes, general representations and transferable ML models that leverage known relationships in existing data will accelerate discovery. Over a large set (~1000) of isovalent transition-metal complexes, we quantify evident relationships for different properties (i.e., spin-splitting and ligand dissociation) between rows of the Periodic Table (i.e., 3d/4d metals and 2p/3p ligands). We demonstrate an extension to the graph-based revised autocorrelation (RAC) representation (i.e., eRAC) that incorporates the group number alongside the nuclear charge heuristic that otherwise overestimates dissimilarity of isovalent complexes. To address the common challenge of discovery in a new space where data are limited, we introduce a transfer learning approach in which we seed models trained on a large amount of data from one row of the Periodic Table with a small number of data points from the additional row. We demonstrate the synergistic value of the eRACs alongside this transfer learning strategy to consistently improve model performance. Analysis of these models highlights how the approach succeeds by reordering the distances between complexes to be more consistent with the Periodic Table, a property we expect to be broadly useful for other material domains.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Observational evidence for groundwater influence on crop yields in the United States

As climate change shifts crop exposure to dry and wet extremes, a better understanding of factors governing crop response is needed. Recent studies identified shallow groundwater—groundwater within or near the crop rooting zone—as influential, yet existing evidence is largely based on theoretical crop model simulations, indirect or static groundwater data, or small-scale field studies. Here, we use observational satellite yield data and dynamic water table simulations from 1999 to 2018 to provide field-scale evidence for shallow groundwater effects on maize yields across the United States Corn Belt. We identify three lines of evidence supporting groundwater influence: 1) crop model simulations better match observed yields after improvements in groundwater representation; 2) machine learning analysis of observed yields and modeled groundwater levels reveals a subsidy zone between 1.1 and 2.5 m depths, with yield penalties at shallower depths and no effect at deeper depths; and 3) locations with groundwater typically in the subsidy zone display higher yield stability across time. We estimate an average 3.4% yield increase when groundwater levels are at optimum depth, and this effect roughly doubles in dry conditions. Groundwater yield subsidies occur ~35% of years on average across locations, with 75% of the region benefitting in at least 10% of years. Overall, we estimate that groundwater-yield interactions had a net monetary contribution of approximately $10 billion from 1999 to 2018. This study provides empirical evidence for region-wide groundwater yield impacts and further underlines the need for better quantification of groundwater levels and their dynamic responses to short- and long-term weather conditions.

60 APPLIED LIFE SCIENCES↗

Design and Testing of the Address in Real-Time Data Driver Card for the Micromegas Detector of the ATLAS New Small Wheel Upgrade

The Address in Real Time Data Driver Card (ADDC) is designed to transmit the trigger data in the Micro-Mesh Gaseous Structure (Micromegas) detector of the ATLAS New Small Wheel (NSW) upgrade. The Address in Real Time (ART) signals are generated by the front-end ASIC, named VMM chip, to indicate the address of the first above-threshold event. A custom ASIC (ART ASIC) is designed to receive the ART signals from the VMM chip and implement the hit-selection. The processed data from the ART ASIC will be transmitted out of the NSW through the GBTx serializer, the unidirectional Versatile Twin Transmitter (VTTx) and fiber optical links. The ART signal is critical for the ATLAS experiment trigger selection thus the performance and stability of the ADDC is very important. To ensure extensive testing of the ADDC, an FPGA Mezzanine Card (FMC) based testing platform and a special designed firmware/software are developed. We find that this test platform works with the commercial Xilinx VC707 FPGA development kit, independent of the other electronics of the NSW it can test all the functions of the ADDC and its long-term stability. This paper will introduce the design, testing procedure and results of the ADDC and the FMC testing platform.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

malbacR: A Package for Standardized Implementation of Batch Correction Methods for Omics Data

Mass spectrometry is a powerful tool for identifying and analyzing small molecules, such as metabolites and lipids, in com-plex biological samples. Liquid chromatography and gas chromatography mass spectrometry studies quite commonly in-volve large numbers of samples, which can require significant time for sample preparation and analyses. To accommodate such studies, the samples are commonly split into batches. Inevitably, variations in sample handling, temperature fluctua-tion, imprecise timing, column degradation and other factors result in systematic errors or biases of the measured abundances between the batches. Numerous methods are available via R packages to assist with batch correction for small molecule om-ics data; however, since these methods were developed by different research teams, the algorithms are available in separate R packages, each with different data input and output formats. We introduce the malbacR package which consolidates eleven common batch effect correction methods for small molecule omics data into one place so users can easily implement and compare: pareto scaling, power scaling, range scaling, ComBat, EigenMS, NOMIS, RUV-random, QC-RLSC, WaveI-CA2.0, TIGER, and SERRF. The malbacR package standardizes data input and output formats across these batch correction methods. The package works in conjunction with the pmartR package, allowing users to seamlessly include batch effect cor-rection in a pmartR workflow without needing any additional data manipulation.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Assessment of a Detailed Biomass Pyrolysis Kinetic Scheme in Multiscale Simulations of a Single-Particle Pyrolyzer and a Pilot-Scale Entrained Flow Pyrolyzer

A detailed biomass pyrolysis kinetic scheme was assessed in the multiscale simulations of a single-particle pyrolyzer with slow pyrolysis and a pilot-scale entrained flow pyrolyzer with fast pyrolysis. The detailed kinetic scheme of biomass pyrolysis developed by the CRECK group consists of 32 reactions and 58 species. A multiscale simulation model was developed, where the CRECK kinetics was employed to simulate biomass pyrolysis reactions, a one-dimensional particle model was utilized to simulate the intraparticle transport phenomena, and the particle-in-cell (PIC) model was employed to simulate the hydrodynamics. The multiscale model was first applied to simulate a single-particle pyrolysis experiment. The simulation with nonisothermal particles matched the experimental data better than the simulation with isothermal particles. Then the multiscale model was applied to simulate the pilot-scale entrained flow pyrolyzer. In this case, the simulation with isothermal particles matched the experimental data better than the simulation with nonisothermal particles. The reason for this difference might be that the kinetics itself already partially included the intraparticle transport effect as it was fitted using both TGA data (slow pyrolysis of small size biomass) and fluidized bed data (fast pyrolysis of relatively large size biomass). This study provides some insights into biomass pyrolysis kinetics development and pyrolyzer multiscale simulation for a future study.

09 BIOMASS FUELS↗

Structure-aware graph neural network based deep transfer learning framework for enhanced predictive analytics on diverse materials datasets

Abstract Modern data mining methods have demonstrated effectiveness in comprehending and predicting materials properties. An essential component in the process of materials discovery is to know which material(s) will possess desirable properties. For many materials properties, performing experiments and density functional theory computations are costly and time-consuming. Hence, it is challenging to build accurate predictive models for such properties using conventional data mining methods due to the small amount of available data. Here we present a framework for materials property prediction tasks using structure information that leverages graph neural network-based architecture along with deep-transfer-learning techniques to drastically improve the model’s predictive ability on diverse materials (3D/2D, inorganic/organic, computational/experimental) data. We evaluated the proposed framework in cross-property and cross-materials class scenarios using 115 datasets to find that transfer learning models outperform the models trained from scratch in 104 cases, i.e., ≈90%, with additional benefits in performance for extrapolation problems. We believe the proposed framework can be widely useful in accelerating materials discovery in materials science.

Chemistry↗

Development of the Senseiver for efficient field reconstruction from sparse observations

Abstract The reconstruction of complex time-evolving fields from sensor observations is a grand challenge. Frequently, sensors have extremely sparse coverage and low-resource computing capacity for measuring highly nonlinear phenomena. While numerical simulations can model some of these phenomena using partial differential equations, the reconstruction problem is ill-posed. Data-driven-strategies provide crucial disambiguation, but these suffer in cases with small amounts of data, and struggle to handle large domains. Here we present the Senseiver, an attention-based framework that excels in reconstructing complex spatial fields from few observations with low overhead. The Senseiver reconstructs n -dimensional fields by encoding arbitrarily sized sparse sets of inputs into a latent space using cross-attention, producing uniform-sized outputs regardless of the number of observations. This allows efficient inference by decoding only a sparse set of output observations, while a dense set of observations is needed to train. This framework enables training of data with complex boundary conditions and extremely large fine-scale simulations. We build on the Perceiver IO by enabling training models with fewer parameters, which facilitates field deployment, and a training framework that allows a flexible number of sensors as input, which is critical for real-world applications. We show that the Senseiver advances the state-of-the-art of field reconstruction in many applications.

97 MATHEMATICS AND COMPUTING↗

2021 Smoky Mountains Conference Data Challenge Synthetic-to-Real Domain Adaptation for Autonomous Driving Dataset

The dataset is comprised of both real and synthetic images from a vehicle's forward-facing camera. Each camera image is accompanied by a corresponding pixel-level semantic segmentation image (all files are .png files). In total, the dataset contains 5600 images in the training/validation set and 1400 images in the testing set. The training dataset contains mostly synthetic RGB images collected with a wide range of weather and lighting conditions using the CARLA simulator [1]. In addition, the training data also includes a small pre-selected subset of data from the Cityscapes training dataset – which is comprised of RGB-segmentation image pairs from driving scenarios in various European cities [2]. The testing data is split into three sets. The first set contains synthetic CARLA images with weather/lighting conditions that were not present in the training set. The second set is a subset of the Cityscapes testing dataset. Finally, the third set is an unknown testing set which will not be revealed to the participants until after the submission deadline. [1] Dosovitskiy, A., Ros, G., Codevilla, F., Lopez, A., and Koltun, V. (2017, October). CARLA: An open urban driving simulator. In Conference on robot learning (pp. 1-16). PMLR. [2] Cordts, M., Omran, M., Ramos, S., Rehfeld, T., Enzweiler, M., Benenson, R., ... and Schiele, B. (2016). The cityscapes dataset for semantic urban scene understanding. In Proceedings of the IEEE conference on computer vision and pattern recognition (pp. 3213-3223).

99 GENERAL AND MISCELLANEOUS↗

Molecular Structure of Sphingomyelin in Fluid Phase Bilayers Determined by the Joint Analysis of Small-Angle Neutron and X-ray Scattering Data

In this work, we have determined the fluid bilayer structure of palmitoyl sphingomyelin (PSM) and stearoyl sphingomyelin (SSM) by simultaneously analyzing small-angle neutron and X-ray scattering data. Using a newly developed scattering density profile (SDP) model for sphingomyelin lipids, we report structural parameters including the area per lipid, total bilayer thickness, and hydrocarbon thickness, in addition to lipid volumes determined by densitometry. Unconstrained all-atom simulations of PSM bilayers at 55 °C using the C36 CHARMM force field produced a lipid area of 56 Å 2 , a value that is 10% lower than the one determined experimentally by SDP analysis (61.9 Å2). Furthermore, scattering form factors calculated from the unconstrained simulations were in poor agreement with experimental form factors, even though segmental order parameter (S CD ) profiles calculated from the simulations were in relatively good agreement with S CD profiles obtained from NMR experiments. Conversely, constrained area simulations at 61.9 Å 2 resulted in good agreement between the simulation and experimental scattering form factors, but not with S CD profiles from NMR. We discuss possible reasons for the discrepancies between these two types of data that are frequently used as validation metrics for molecular dynamics force fields.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Adversarial methods to reduce simulation bias in neutrino interaction event filtering at liquid argon time projection chambers

For current and future neutrino oscillation experiments using large liquid argon time projection chambers (LAr-TPCs), a key challenge is identifying neutrino interactions from the pervading cosmic-ray background. Rejection of such background is often possible using traditional cut-based selections, but this typically requires the prior use of computationally expensive reconstruction algorithms. This work demonstrates an alternative approach of using a 3D submanifold sparse convolutional network trained on low-level information from the scintillation light signal of interactions inside LAr-TPCs. This technique is applied to example simulations from ICARUS, the far detector of the short baseline neutrino program at Fermilab. The results of the network, show that cosmic background is reduced by up to 76.3% whilst neutrino interaction selection efficiency remains over 98.9%. We further present a way to mitigate potential biases from imperfect input simulations by applying domain adversarial neural networks (DANNs), for which modified simulated samples are introduced to imitate real data and a small portion of them are used for adversarial training. A series of mock-data studies are performed and demonstrate the effectiveness of using DANNs to mitigate biases, showing neutrino interaction selection efficiency performances significantly better than that achieved without the adversarial training.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Machine-Learning of Nonlocal Kernels for Anomalous Subsurface Transport from Breakthrough Curves

Anomalous behavior is ubiquitous in subsurface solute transport due to the presence of high degrees of heterogeneity at different scales in the media. Although fractional models have been extensively used to describe the anomalous transport in various subsurface applications, their application is hindered by computational challenges. Simpler nonlocal models characterized by integrable kernels and finite interaction length represent a computationally feasible alternative to fractional models; yet, the informed choice of their kernel functions still remains an open problem. We propose a general data-driven framework for the discovery of optimal kernels on the basis of very small and sparse data sets in the context of anomalous subsurface transport. Using spatially sparse breakthrough curves recovered from fine-scale particle-density simulations, we learn the best coarse-scale nonlocal model using a nonlocal operator regression technique. Predictions of the breakthrough curves obtained using the optimal nonlocal model show good agreement with fine-scale simulation results even at locations and time intervals different from the ones used to train the kernel, confirming the excellent generalization properties of the proposed algorithm. A comparison with trained classical models and with black-box deep neural networks confirms the superiority of the predictive capability of the proposed model.

97 MATHEMATICS AND COMPUTING↗

Complete and Correct Transfer of Information (CACTI)

Many distributed systems, file transfer mechanisms, and message passing systems offer reliability mechanisms such as acknowledgements, retries, and durability. While these tools may be “good enough” for their typical use cases, they may not offer sufficient coverage for the wide range of faults that impact data transfers and communication. A gap in the reliability measures may lead to some small amount of data loss. Some high-consequence systems cannot tolerate the loss or corruption of even a single record. We present seven principles that will counter a wide range of faults and protect against data loss and corruption. These principles bring together lessons learned from a wide range of technologies and can inform appropriate system design and application usage. These principles will help readers reason on how prevent data loss in a multi-hop pipeline and how to properly use tools that may have a deficiency in reliability.

97 MATHEMATICS AND COMPUTING↗

Classification of animal sounds in a hyperdiverse rainforest using convolutional neural networks with data augmentation

To protect tropical forest biodiversity, we need to be able to detect it reliably, cheaply, and at scale. Automated detection of sound producing animals from passively recorded soundscapes via machine-learning approaches is a promising technique towards this goal, but it is constrained by the necessity of large training data sets. Using soundscapes from a tropical forest in Borneo and a Convolutional Neural Network model (CNN), we investigate i) the minimum viable training data set size for accurate prediction of call types (‘sonotypes’), and ii) the extent to which data augmentation and transfer learning can overcome the issue of small and imbalanced training data sets. We found that even relatively high sample sizes (>80 per sonotype) lead to mediocre accuracy, which however improved significantly with data augmentation and transfer learning, including at extremely small sample sizes (3 per sonotype), regardless of taxonomic group or call characteristics. Neither transfer learning nor data augmentation alone achieved high accuracy. Our results suggest that transfer learning and data augmentation could make the use of CNNs to classify species’ vocalizations feasible even for small soundscape-based projects with many rare species. Retraining our open-source model requires only basic programming skills which makes it possible for individual conservation initiatives to match their local context, in order to enable more evidence-informed management of biodiversity.

54 ENVIRONMENTAL SCIENCES↗

Enhancing ZFP: A Statistical Approach to Understanding and Reducing Error Bias in a Lossy Floating-Point Compression Algorithm

The amount of data generated and gathered in scientific simulations and data collection applications is continuously growing, putting mounting pressure on storage and bandwidth concerns. A means of reducing such issues is data compression; but, lossless data compression is typically ineffective when applied to floating-point data. Thus, users tend to apply a lossy data compressor, which allows for small deviations from the original data. It is essential to understand how the error from lossy compression impacts the accuracy of the data analytics. Thus, we must analyze not only the compression properties but the error as well. In this paper, we provide a statistical analysis of the error caused by ZFP compression, a state-of-the-art, lossy compression algorithm explicitly designed for floating-point data. We show that the error is indeed biased and propose simple modifications to the algorithm to neutralize the bias and further reduce the resulting error.

97 MATHEMATICS AND COMPUTING↗