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DOE OSTI2021

Unified Nanotechnology Format: One Way to Store Them All

The domains of DNA and RNA nanotechnology are steadily gaining in popularity while proving their value with various successful results, including biosensing robots and drug delivery cages. Nowadays, the nanotechnology design pipeline usually relies on computer-based design (CAD) approaches to design and simulate the desired structure before the wet lab assembly. To aid with these tasks, various software tools exist and are often used in conjunction. However, their interoperability is hindered by a lack of a common file format that is fully descriptive of the many design paradigms. Therefore, in this paper, we propose a Unified Nanotechnology Format (UNF) designed specifically for the biomimetic nanotechnology field. UNF allows storage of both design and simulation data in a single file, including free-form and lattice-based DNA structures. By defining a logical and versatile format, we hope it will become a widely accepted and used file format for the nucleic acid nanotechnology community, facilitating the future work of researchers and software developers. Together with the format description and publicly available documentation, we provide a set of converters from existing file formats to simplify the transition. Finally, we present several use cases visualizing example structures stored in UNF, showcasing the various types of data UNF can handle.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

DOE OSTI2025

A Unified Perspective on Poincaré and Galilei Relativity: II. General Relativity: A. Kinematics

Building on the first paper in this series (Paper I), a unified perspective on Poincaré and Galilei physics in a 5-dimensional spacetime setting is further pursued through a consideration of the kinematics of general relativity, with the gravitational dynamics to be addressed separately. The metric of the 5-dimensional affine spacetimes governed by the Bargmann groups considered in Paper I (central extensions of the Poincaré and Galilei groups) is generalized to curved spacetime by extending the usual 1 + 3 (traditionally ‘3 + 1’) formalism of general relativity on 4-dimensional spacetime to a 1 + 3 + 1 formalism, whose spacetime kinematics is shown to be consistent with that of the usual 1 + 3 formalism. Spacetime tensor laws governing the motion of an elementary classical material particle and the dynamics of a simple fluid are presented, along with their 1 + 3 + 1 decompositions; these reference the foliation of spacetime in a manner that partially reverts the Einstein perspective (accelerated fiducial observers, and geodesic material particles and fluid elements) to a Newton-like perspective (geodesic fiducial observers, and accelerated material particles and fluid elements subject to a gravitational force). These spacetime laws of motion for particles and fluids also suggest that a strong-field Galilei general relativity would involve a limit in which not only 𝑐 → ∞ but also 𝐺 → ∞ , such that 𝐺/𝑐 2 remains constant.

Bargmann group↗

DOE OSTI2020

A Unified View of Topological Phase Transition in Band Theory

We develop a unified view of topological phase transitions (TPTs) in solids by revising the classical band theory with the inclusion of topology. Reevaluating the band evolution from an “atomic crystal” (a normal insulator (NI)) to a solid crystal, such as a semiconductor, we demonstrate that there exists ubiquitously an intermediate phase of topological insulator (TI), whose critical transition point displays a linear scaling between electron hopping potential and average bond length, underlined by deformation-potential theory. The validity of the scaling relation is verified in various two-dimensional (2D) lattices regardless of lattice symmetry, periodicity, and form of electron hoppings, based on a generic tight-binding model. Significantly, this linear scaling is shown to set an upper bound for the degree of structural disorder to destroy the topological order in a crystalline solid, as exemplified by formation of vacancies and thermal disorder. Our work formulates a simple framework for understanding the physical nature of TPTs with significant implications in practical applications of topological materials.

42 ENGINEERING↗

DOE OSTI2021

Dark Matter Constraints from a Unified Analysis of Strong Gravitational Lenses and Milky Way Satellite Galaxies

Joint analyses of small-scale cosmological structure probes have been relatively unexplored yet promise to advance measurements of microphysical dark matter properties using heterogeneous data. Here, we present a multidimensional analysis of dark matter substructure using strong gravitational lenses and the Milky Way (MW) satellite galaxy population, accounting for degeneracies in model predictions and using covariances in the constraining power of these individual probes for the first time. We simultaneously infer the projected subhalo number density and the half-mode mass describing the suppression of the subhalo mass function in thermal relic warm dark matter (WDM), $M_{\mathrm{hm}}$, using the semianalytic model \texttt{Galacticus} to connect the subhalo population inferred from MW satellite observations to the strong lensing host halo mass and redshift regime. Combining MW satellite and strong lensing posteriors in this parameter space yields $M_{\mathrm{hm}}<10^{7.0}\ M_{\mathrm{\odot}}$ (WDM particle mass $m_{\mathrm{WDM}}>9.7\ \mathrm{keV}$) at $95\%$ confidence and disfavors $M_{\mathrm{hm}}=10^{7.4}\ M_{\mathrm{\odot}}$ ($m_{\mathrm{WDM}}=7.4\ \mathrm{keV}$) with a 20:1 marginal likelihood ratio, improving limits on $m_{\mathrm{WDM}}$ set by the two methods independently by $\sim 30\%$. These results are marginalized over the line-of-sight contribution to the strong lensing signal, the mass of the MW host halo, and the efficiency of subhalo disruption due to baryons and are robust to differences in the disruption efficiency between the MW and strong lensing regimes at the $\sim 10\%$ level. This work paves the way for unified analyses of next-generation small-scale structure measurements covering a wide range of scales and redshifts.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2025

Union through UNITY: Cosmology with 2000 SNe Using a Unified Bayesian Framework

Type Ia supernovae (SNe Ia) were instrumental in establishing the acceleration of the Universe’s expansion. By virtue of their combination of distance reach, precision, and prevalence, they continue to provide key cosmological constraints, complementing other cosmological probes. Individual SN surveys cover only over about a factor of 2 in redshift, so compilations of multiple SN data sets are strongly beneficial. We assemble an up-to-date “Union” compilation of 2087 cosmologically useful SNe Ia from 24 data sets (“Union3”). We take care to put all SNe on the same distance scale and update the light-curve fitting with SALT3 to use the full rest-frame optical. Over the next few years, the number of cosmologically useful SNe Ia will increase by more than a factor of 10, and keeping systematic uncertainties subdominant will be more challenging than ever. We discuss the importance of treating outliers, selection effects, light-curve shape/color populations/standardization relations, unexplained dispersion, and heterogeneous observations simultaneously. We present an updated Bayesian framework, called UNITY1.5 (Unified Nonlinear Inference for Type-Ia cosmologY), that incorporates significant improvements in our ability to model selection effects, standardization, and systematic uncertainties compared to earlier analyses. As an analysis byproduct, we also recover the posterior of the SN-only peculiar-velocity field, although we do not interpret it in this work. We compute updated cosmological constraints with Union3 and UNITY1.5, finding weak 1.7σ–2.6σ tension with flat cold dark matter and possible evidence for thawing dark energy (w0 > − 1, wa < 0). We release our SN distances, light-curve fits, and UNITY1.5 framework to the community.

Rubin, David↗

DOE OSTI2026

A Unified Photometric Redshift Calibration for Weak Lensing Surveys Using the Dark Energy Spectroscopic Instrument

The effective redshift distribution n(z) of galaxies is a critical component in the study of weak gravitational lensing. Here, we introduce a new method for determining n(z) for weak lensing surveys based on high-quality redshifts and neural-network-based importance weights. Additionally, we present the first unified photometric redshift calibration of the three leading stage-III weak lensing surveys, the Dark Energy Survey (DES), the Hyper Suprime-Cam (HSC) survey, and the Kilo-Degree Survey (KiDS), with state-of-the-art spectroscopic data from the Dark Energy Spectroscopic Instrument (DESI). We verify our method using a new, data-driven approach and obtain n(z) constraints with statistical uncertainties of the order of $σ_z$ ~ 0.01 and smaller. Our analysis is largely independent of previous photometric redshift calibrations and, thus, provides an important cross-check in light of recent cosmological tensions. Overall, we find excellent agreement with previously published results on the DES Y3 and HSC Y1 data sets, while there are some differences on the mean redshift with respect to the previously published KiDS-1000 results. We attribute the latter to mismatches in photometric noise properties in the COSMOS field compared to the wider KiDS self-organizing map-gold catalog. At the same time, the new n(z) estimates for KiDS do not significantly change estimates of cosmic structure growth from cosmic shear. Finally, we discuss how our method can be applied to future weak lensing calibrations with DESI data.

Lange, J. U. [American Univ., Washington, DC (Unit↗

DOE OSTI2021

Seeding Supermassive Black Holes with Self-interacting Dark Matter: A Unified Scenario with Baryons

Observations show that supermassive black holes (SMBHs) with a mass of ~10 9 M ⊙ exist when the universe is just 6% of its current age. We propose a scenario where a self-interacting dark matter halo experiences gravothermal instability and its central region collapses into a seed black hole. The presence of baryons in protogalaxies could significantly accelerate the gravothermal evolution of the halo and shorten collapse timescales. The central halo could dissipate its angular momentum remnant via viscosity induced by the self-interactions. The host halo must be on high tails of density fluctuations, implying that high-z SMBHs are expected to be rare in this scenario. We further derive conditions for triggering general relativistic instability of the collapsed region. Furthermore, our results indicate that self-interacting dark matter can provide a unified explanation for diverse dark matter distributions in galaxies today and the origin of SMBHs at redshifts z ~ 6–7.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2023

A Unified Picture of Short and Long Gamma-Ray Bursts from Compact Binary Mergers

Abstract The recent detections of the ∼10 s longγ-ray bursts (GRBs) 211211A and 230307A followed by softer temporally extended emission (EE) and kilonovae point to a new GRB class. Using state-of-the-art first-principles simulations, we introduce a unifying theoretical framework that connects binary neutron star (BNS) and black hole–NS (BH–NS) merger populations with the fundamental physics governing compact binary GRBs (cbGRBs). For binaries with large total masses,M tot ≳ 2.8M ⊙ , the compact remnant created by the merger promptly collapses into a BH surrounded by an accretion disk. The duration of the pre-magnetically arrested disk (MAD) phase sets the duration of the roughly constant power cbGRB and could be influenced by the disk mass,M d . We show that massive disks (M d ≳ 0.1M ⊙ ), which form for large binary mass ratiosq≳ 1.2 in BNS orq≲ 3 in BH–NS mergers, inevitably produce 211211A-like long cbGRBs. Once the disk becomes MAD, the jet power drops with the mass accretion rate as M ̇ ∼ t − 2 , establishing the EE decay. Two scenarios are plausible for short cbGRBs. They can be powered by BHs with less massive disks, which form for otherqvalues. Alternatively, for binaries withM tot ≲ 2.8M ⊙ , mergers should go through a hypermassive NS (HMNS) phase, as inferred for GW170817. Magnetized outflows from such HMNSs, which typically live for ≲1 s, offer an alternative progenitor for short cbGRBs. The first scenario is challenged by the bimodal GRB duration distribution and the fact that the Galactic BNS population peaks at sufficiently low masses that most mergers should go through an HMNS phase.

Astronomy & Astrophysics↗

DOE OSTI2020

Development of aerosol activation in the double-moment Unified Model and evaluation with CLARIFY measurements

Representing the number and mass of cloud and aerosol particles independently in a climate, weather prediction or air quality model is important in order to simulate aerosol direct and indirect effects on radiation balance. Here we introduce the first configuration of the UK Met Office Unified Model in which both cloud and aerosol particles have “double-moment” representations with prognostic number and mass. The GLObal Model of Aerosol Processes (GLOMAP) aerosol microphysics scheme, already used in the Hadley Centre Global Environmental Model version 3 (HadGEM3) climate configuration, is coupled to the Cloud AeroSol Interacting Microphysics (CASIM) cloud microphysics scheme. We demonstrate the performance of the new configuration in high-resolution simulations of a case study defined from the CLARIFY aircraft campaign in 2017 near Ascension Island in the tropical southern Atlantic. We improve the physical basis of the activation scheme by representing the effect of existing cloud droplets on the activation of new aerosol, and we also discuss the effect of unresolved vertical velocities. We show that neglect of these two competing effects in previous studies led to compensating errors but realistic droplet concentrations. While these changes lead only to a modest improvement in model performance, they reinforce our confidence in the ability of the model microphysics code to simulate the aerosol–cloud microphysical interactions it was designed to represent. Capturing these interactions accurately is critical to simulating aerosol effects on climate.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Constraining the particle-scale diversity of black carbon light absorption using a unified framework

Abstract. Atmospheric black carbon (BC), the strongest absorber of visible solar radiation in the atmosphere, manifests across a wide spectrum of morphologies and compositional heterogeneity. Phenomenologically, the distribution of BC among diverse particles of varied composition gives rise to enhancement of its light absorption capabilities by over twofold in comparison to that of nascent or unmixed homogeneous BC. This situation has challenged the modeling community to consider the full complexity and diversity of BC on a per-particle basis for accurate estimation of its light absorption. The conventionally adopted core–shell approximation, although computationally inexpensive, is inadequate not only in estimating but also capturing absorption trends for ambient BC. Here we develop a unified framework that encompasses the complex diversity in BC morphology and composition using a single metric, the phase shift parameter (ρBC), which quantifies how much phase shift the incoming light waves encounter across a particle compared to that in its absence. We systematically investigate variations in ρBC across the multi-space distribution of BC morphology, mixing state, mass, and composition as reported by field and laboratory observations. We find that ρBC>1 leads to decreased absorption by BC, which explains the weaker absorption enhancements observed in certain regional BC compared to laboratory results of similar mixing state. We formulate universal scaling laws centered on ρBC and provide physics-based insights regarding core–shell approximation overestimating BC light absorption. We conclude by packaging our framework in an open-source Python application to facilitate community-level use in future BC-related research. The package has two main functionalities. The first functionality is for forward problems, wherein experimentally measured BC mixing state and assumed BC morphology are input, and the aerosol absorption properties are output. The second functionality is for inverse problems, wherein experimentally measured BC mixing state and absorption are input, and the morphology of BC is returned. Further, if absorption is measured at multiple wavelengths, the package facilitates the estimation of the imaginary refractive index of coating materials by combining the forward and inverse procedures. Our framework thus provides a computationally inexpensive source for calculation of absorption by BC and can be used to constrain light absorption throughout the atmospheric lifetime of BC.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

A high-resolution unified observational data product of mesoscale convective systems and isolated deep convection in the United States for 2004–2017

Deep convection possesses markedly distinct properties at different spatiotemporal scales. We present an original high-resolution (4 km, hourly) unified data product of mesoscale convective systems (MCSs) and isolated deep convection (IDC) in the United States east of the Rocky Mountains and examine their climatological characteristics from 2004 to 2017. The data product is produced by applying an updated Flexible Object Tracker algorithm to hourly satellite brightness temperature, radar reflectivity, and precipitation datasets. Analysis of the data product shows that MCSs are much larger and longer-lasting than IDC, but IDC occurs about 100 times more frequently than MCSs, with a mean convective intensity comparable to that of MCSs. Hence both MCS and IDC are essential contributors to precipitation east of the Rocky Mountains, although their precipitation shows significantly different spatiotemporal characteristics. IDC precipitation concentrates in summer in the Southeast with a peak in the late afternoon, while MCS precipitation is significant in all seasons, especially for spring and summer in the Great Plains. The spatial distribution of MCS precipitation amounts varies by season, while diurnally, MCS precipitation generally peaks during nighttime except in the Southeast. Potential uncertainties and limitations of the data product are also discussed. The data product is useful for investigating the atmospheric environments and physical processes associated with different types of convective systems; quantifying the impacts of convection on hydrology, atmospheric chemistry, and severe weather events; and evaluating and improving the representation of convective processes in weather and climate models.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Importance of ice nucleation and precipitation on climate with the Parameterization of Unified Microphysics Across Scales version 1 (PUMASv1)

Cloud microphysics is critical for weather and climate prediction. In this work, we document updates and corrections to the cloud microphysical scheme used in the Community Earth System Model (CESM) and other models. These updates include a new nomenclature for the scheme, now called Parameterization of Unified Microphysics Across Scales (PUMAS), and the ability to run the scheme on graphics processing units (GPUs). The main science changes include refactoring an ice number limiter and associated changes to ice nucleation, adding vapor deposition onto snow, and introducing an implicit numerical treatment for sedimentation. We also detail the improvements in computational performance that can be achieved with GPU acceleration. We then show the impact of these scheme changes on the (a) mean state climate, (b) cloud feedback response to warming, and (c) aerosol forcing. We find that corrections are needed to the immersion freezing parameterization and that ice nucleation has important impacts on climate. We also find that the revised scheme produces less cloud liquid and ice but that this can be adjusted by changing the loss process for cloud liquid (autoconversion). Furthermore, there are few discernible effects of the PUMAS changes on cloud feedbacks but some reductions in the magnitude of aerosol–cloud interactions (ACIs). Small cloud feedback changes appear to be related to the implicit sedimentation scheme, with a number of factors affecting ACIs.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Assessing modifications to the Abdul-Razzak and Ghan aerosol activation parameterization (version ARG2000) to improve simulated aerosol–cloud radiative effects in the UK Met Office Unified Model (UM version 13.0)

The representation of aerosol activation is a key source of uncertainty in global composition-climate model simulations of aerosol–cloud interactions. The Abdul-Razzak and Ghan (ARG) activation parameterization is used in several global and regional models that employ modal aerosol microphysics schemes. In this study, we investigate the ability of the ARG parameterization to reproduce simulations with a cloud parcel model and find its performance is sensitive to the geometric standard deviations (widths) of the lognormal aerosol modes. We recommend adjustments to three constant parameters in the ARG equations, which improve the performance of the parameterization for small mode widths and its ability to simulate activation in polluted conditions. For the accumulation mode width of 1.4 used in the Met Office Unified Model (UM), the modifications decrease the mean bias in the activated fraction of aerosols compared to a cloud parcel model from −6.6 % to +1.2 %. We implemented the improvements in the UM and compared simulated global cloud droplet concentrations with satellite observations. The simulated cloud radiative effect changes by −1.43 W m −2 (6 %) and aerosol indirect radiative forcing over the industrial period changes by −0.10 W m −2 (10 %).

Ghosh, Pratapaditya [Carnegie Mellon University, P↗

DOE OSTI2025

CoCoMET v1.0: a unified open-source toolkit for atmospheric object tracking and analysis

Advances in performance and analysis capabilities have accelerated the development of object tracking algorithms for atmospheric research. This has resulted in a growing number of studies using Lagrangian tracking techniques to analyze the evolution of atmospheric phenomena and the underlying processes. However, the increasing complexity and variety of tracking algorithms present a steep learning curve for new users and make it difficult for existing users to compare algorithm performance. We introduce CoCoMET (Community Cloud Model Evaluation Toolkit), an open-source toolkit that addresses these issues. CoCoMET simplifies the process of running multiple tracking algorithms simultaneously and analyzing objects in both model and observational datasets by specifying parameters in a single configuration file. It standardizes input data from different sources into a consistent format and unifies the tracking output across algorithms. CoCoMET enhances the functionality of existing tracking methods by calculating additional properties such as cell growth and dissipation rates, perimeter, surface area, convexity, and irregularity. In addition, CoCoMET includes a novel method for identifying mergers and splits in 2D and 3D tracks and supports the integration of Eulerian/stationary datasets external to the tracking data for process studies. Its potential utility is demonstrated through examples of model intercomparison, model evaluation against observations, and comparisons between tracking algorithms. Designed for open-source environments, CoCoMET will continue to expand with future releases, incorporating more input data types and tracking algorithms.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Unified Stress-Strain Model for Plasticity to the Structural Instability

A unified model for the work hardening Θσ Θ(σ) and stress-strain σε σ(ε) behavior is presented that accounts for deformation under tensile loading, from the onset of yielding at the proportional limit up to the ultimate strength as defined at the structural instability. The origin of this approach is based on a negative exponential formulation for an asymptotic-curvilinear work-hardening model that accounts for the rapid strengthening of metals as well as the continuation of steady-state deformation to the instability.

36 MATERIALS SCIENCE↗

DOE OSTI2022

A Unified Testing Platform to Mature Blockchain Applications for Grid Emulation Environments: Preprint

Blockchain technology is a relatively novel technology that can be used to develop more decentralized, autonomous and tamper-evident solutions. A feature that can aid Transactive Energy Systems to reach their goals by enabling individual actors to communicate and reach consensus with other participants in a more decentralized fashion. However, technical barriers to evaluate and adopt this type of technology within the electrical domain still exist. To facilitate this task, BLOSEM Unified Testing Platform (UTP), a DOE-sponsored, multi-lab effort intends to accelerate the development of solutions by offering a common set of reusable services that can be used to interconnect existent grid tools with blockchain services. UTP is intended to serve as development platform that can provide application engineers with the technical means to evaluate potential blockchain solutions, by enabling them to concentrate on the actual application functionalities while at the same time abstracting the connectivity and performance measurement tasks. The use of BLOSEM UTP is further demonstrated by implementing two potential use cases that are intended to validate both the feasibility of implementing these applications as blockchain-based solutions while also demonstrating the features provided by UTP.

blockchain↗

DOE OSTI2022

Toward a Unified Framework for WEC Numerical Modeling

This presentation is about moving toward a united framework for WEC numerical modeling. A unified framework for WEC numerical modeling could help device developers on three fronts: 1) optimization; 2) more accurate load estimates; 3) validation.

modeling↗

DOE OSTI2020

OpenACC unified programming environment for GPU and FPGA multi-hybrid acceleration

Attached accelerators have been frequently used in recent High Per- formance Computing (HPC) systems because of their high performance/power ratio. In particular, the Graphics Processing Unit (GPU) is the most popu- lar accelerator owing to its high peak FLOPS performance and high memory bandwidth supported by HBM2, etc. However, the performance of GPU depends highly on a large degree of SIMD parallelism and has difficulty sustaining a high performance on programs with frequent branch operations or a partially low degree of parallelism.By contrast, a Field Programmable Gate Array (FPGA) has received attention as a different type of accelerator than GPU as a fully reconfigurable processor fitting the target applications. The high performance of FPGA is mainly provided by a pipelined operation and optimized circuit suitable for any operation even with frequent conditional branches. We have been focusing on the flexibility of FPGA to compensate for the weakness of GPU. We believe that the coupling of GPU with FPGA can result in one of the most powerful accelerating platforms available.However, the program coding of GPU and FPGA coupling can be quite difficult for application users. Traditionally, CUDA by NVIDIA has been the most popular programming language with the largest share of GPUs used in HPC, whereas a hardware description language such as Verilog HDL has been used in FPGA programming. OpenCL coding has recently become available even on high-end FPGAs. Moreover, several recent studies have also enabled the OpenACC coding for use in FPGA. In this study, we provide a unified programming system based on OpenACC for a platform equipped with both GPU and FPGA aiming at the next-generation accelerated supercomputer framework. Our programming environment is called Multi-Hybrid OpenACC Translator (MHOAT), and in this paper, we describe the basic concept and prototype system of MHOAT based on an evaluation on the amount of coding required and the performance of a hybrid multi-device accelerated system.

Tsunashima, Ryuta↗