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At least 145 records · Page 8

Photometric redshifts and intrinsic alignments: Degeneracies and biases in the 3 × 2 pt analysis

We present a systematic study of cosmological parameter bias in weak lensing and large-scale structure analyses for upcoming imaging surveys induced by the interplay of intrinsic alignments (IA) and photometric redshift (photo-z) model misspecification error. We first examine the degeneracies between the parameters of the tidal alignment–tidal torquing (TATT) model for IA and of a photo-z model including a mean shift ( Δ z ¯ ) and variance ( σ z ) for each tomographic bin of lenses and sources, under a variety of underlying true IA behaviors. We identify strong degeneracies between: (1) the redshift scaling of the tidal alignment amplitude and the mean shift and variances of source bins, (2) the redshift scaling of the tidal torquing amplitude and the variance of the lowest- z source bin, and (3) the IA source density weighting and the mean shift and variance of several source bins. We then use this information to guide our exploration of the level of cosmological parameter bias which can be induced given incorrect modeling of IA, photo-z, or both. We find that marginalizing over all the parameters of TATT is generally sufficient to preclude cosmological parameter bias in the scenarios we consider. However, this does not necessarily mean that IA and photo-z parameters are themselves unbiased, nor does it mean that the best-fit model is a good fit to the data. We also find scenarios where the inferred parameters produce χ d . o . f . 2 values indicative of a good fit but cosmological parameter bias is significant, particularly when the IA source density weighting parameter is not marginalized over. Published by the American Physical Society 2024

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Spin Alignment of Vector Mesons in Heavy-Ion Collisions

Polarized quarks and antiquarks in high-energy heavy-ion collisions can lead to the spin alignment of vector mesons formed by quark coalescence. Here, using the relativistic spin Boltzmann equation for vector mesons derived from Kadanoff-Baym equations with an effective quark-meson model for strong interaction and quark coalescence model for hadronizaton, we calculate the spin density matrix element $ρ_{00}$ for Φ mesons and show that anisotropies of local field correlations with respect to the spin quantization direction lead to Φ meson's spin alignment. We propose that the local correlation or fluctuation of Φ fields is the dominant mechanism for the observed Φ meson's spin alignment and its strength can be extracted from experimental data as functions of collision energies. The calculated transverse momentum dependence of $ρ_{00}$ agrees with STAR's data. We further predict the azimuthal angle dependence of $ρ_{00}$ which can be tested in future experiments.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Refinements for Bragg coherent X-ray diffraction imaging: electron backscatter diffraction alignment and strain field computation

Bragg coherent X-ray diffraction imaging (BCDI) allows the 3D measurement of lattice strain along the scattering vector for specific microcrystals. If at least three linearly independent reflections are measured, the 3D variation of the full lattice strain tensor within the microcrystal can be recovered. However, this requires knowledge of the crystal orientation, which is typically attained via estimates based on crystal geometry or synchrotron microbeam Laue diffraction measurements. Presented here is an alternative method to determine the crystal orientation for BCDI measurements using electron backscatter diffraction (EBSD) to align Fe–Ni and Co–Fe alloy microcrystals on three different substrates. The orientation matrix is calculated from EBSD Euler angles and compared with the orientation determined using microbeam Laue diffraction. The average angular mismatch between the orientation matrices is less than ∼6°, which is reasonable for the search for Bragg reflections. The use of an orientation matrix derived from EBSD is demonstrated to align and measure five reflections for a single Fe–Ni microcrystal via multi-reflection BCDI. Using this data set, a refined strain field computation based on the gradient of the complex exponential of the phase is developed. This approach is shown to increase accuracy, especially in the presence of dislocations. The results demonstrate the feasibility of using EBSD to pre-align BCDI samples and the application of more efficient approaches to determine the full lattice strain tensor with greater accuracy.

42 ENGINEERING↗

SpaceNet 9—Cross-Sensor Alignment of Optical and SAR Imagery

Precise registration of high-resolution synthetic aperture radar (SAR) and optical imagery is necessary for realizing the full potential and benefits of multimodal image analysis. However, two significant challenges presently exist. First, there is a lack of annotated datasets and benchmarks available for high-resolution SAR–optical image registration. Second, an assessment of efficient and reliable image registration methods that can precisely align these modalities is lacking. Here, we present a holistic description of the SpaceNet 9 Challenge and its results. We present a description of the dataset and baseline algorithm along with the results of the challenge, including a description of the winning algorithms. We release the SpaceNet 9 dataset along with open-sourcing the winning algorithms and baseline. The objective of SpaceNet 9 was to compute a dense displacement map that indicates the shift needed to align pixels in an optical image to the pixels in a SAR image. The challenge launched in April 2025 and was active for approximately two months. The top five solutions reduced image alignment error from approximately 34 m to under 13 m for public and private test data, with the best results obtaining a registration error of only 8.5 and 6.7 m on the public testing and private testing dataset, respectively. Usage of pretrained image matching models, robust outlier rejection with RANSAC, and estimating local displacement were common among the top solutions. The results of this challenge provide insight into high-resolution SAR–optical image registration and offer opportunities for future benchmarking in this domain. The baseline algorithm, winning solutions, and datasets are available at https://spacenet.ai/sn9-challenge/.

benchmark datasets↗

Self-aligned fabrication of vertical, fin-based structures

Modern power devices rely on complex, three-dimensional, vertical designs to increase their power density, ease their thermal management, and improve their reliability. However, fabrication techniques have historically relied on 2D processes for patterning lateral features. This work presents a new technology that uses multiple steps of angled depositions to fabricate self-aligned vertical, fin-based devices that avoid fundamental lithography resolution and alignment limitations. The fabrication flows of two devices, the self-aligned vertical finFET and the high-κ dielectric fin diode, are presented to demonstrate how angled depositions can readily achieve transistors with submicrometer, vertical gates in a source-first process and also create high-aspect ratio GaN fins with a record 70:1 aspect ratio.

Perozek, Joshua (ORCID:0000000251519131)↗

Predicting Antimicrobial Resistance Using Partial Genome Alignments

Antimicrobial resistance (AMR) is an important global health threat that impacts millions of people worldwide each year. Developing methods that can detect and predict AMR phenotypes can help to mitigate the spread of AMR by informing clinical decision making and appropriate mitigation strategies. Many bioinformatic methods have been developed for predicting AMR phenotypes from whole-genome sequences and AMR genes, but recent studies have indicated that predictions can be made from incomplete genome sequence data. In order to more systematically understand this, we built random forest-based machine learning classifiers for predicting susceptible and resistant phenotypes for Klebsiella pneumoniae (1,640 strains), Mycobacterium tuberculosis (2,497 strains), and Salmonella enterica (1,981 strains). We started by building models from alignments that were based on a reference chromosome for each species. We then subsampled each chromosomal alignment and built models for the resulting subalignments, finding that very small regions, representing approximately 0.1 to 0.2% of the chromosome, are predictive. In K. pneumoniae, M. tuberculosis, and S. enterica, the subalignments are able to predict multiple AMR phenotypes with at least 70% accuracy, even though most do not encode an AMR-related function. We used these models to identify regions of the chromosome with high and low predictive signals. Finally, subalignments that retain high accuracy across larger phylogenetic distances were examined in greater detail, revealing genes and intergenic regions with potential links to AMR, virulence, transport, and survival under stress conditions. IMPORTANCE Antimicrobial resistance causes thousands of deaths annually worldwide. Understanding the regions of the genome that are involved in antimicrobial resistance is important for developing mitigation strategies and preventing transmission. Machine learning models are capable of predicting antimicrobial resistance phenotypes from bacterial genome sequence data by identifying resistance genes, mutations, and other correlated features. They are also capable of implicating regions of the genome that have not been previously characterized as being involved in resistance. In this study, we generated global chromosomal alignments for Klebsiella pneumoniae, Mycobacterium tuberculosis, and Salmonella enterica and systematically searched them for small conserved regions of the genome that enable the prediction of antimicrobial resistance phenotypes. In addition to known antimicrobial resistance genes, this analysis identified genes involved in virulence and transport functions, as well as many genes with no previous implication in antimicrobial resistance.

59 BASIC BIOLOGICAL SCIENCES↗

Distributed Berkeley Efficient Long-Read to Long-Read Aligner and Overlapper (DiBELLA) v1.0.0

We present a parallel algorithm and scalable implementation for genome analysis, specifically the problem of finding overlaps and alignments for data from "third generation" long read sequencers. While long sequences of DNA offer enormous advantages for biological analysis and insight, current long read sequencing instruments have high error rates and therefore require different approaches to analysis than their short read counterparts. Our work focuses on an efficient distributed-memory parallelization of an accurate single-node algorithm for overlapping and aligning long reads. We achieve scalability of this irregular algorithm by addressing the competing issues of increasing parallelism, minimizing communication, constraining the memory footprint, and ensuring good load balance. The resulting application, DiBELLA, is the first distributed memory overlapper and aligner specifically designed for long reads and parallel scalability.

Ellis, Marquita↗

Image Alignment and Flat-Field Correction of Film and Computed Radiography Images on the LLNL Flash Testbed

Computed radiography (CR) imaging plates and film are used in HEAF firing tanks and in the NDE group. The imaging plates allow for the creation of high-resolution digital images with flash X-ray (FXR). A typical treatment of flash X-ray radiographs is flat-field correction, where the image from an experiment is normalized by a “flat-field” or “bright-field” image. This flat-field image is taken in an identical configuration to the experimental image, but without the object or experiment in the field of view (FOV). This treatment reduces spatial effects from the FXR spot size and detector misalignment, as each pixel value in the corrected image represents a ratio of collected radiation with the object in FOV to the collected radiation without the object in FOV. One challenge in the creation of a corrected image is the misalignment of the CR plate or film pack between capturing the flat-field image and the experimental image. Fiducial structures can remedy this issue. Small (3.18mm) stainless steel ball bearings serve as good fiducial structures due to their small size and high radiographic contrast. Spheres are view-agnostic geometry, always presenting a circular cross section no matter the orientation. This process was developed for images from the flash X-ray testbed. The flash testbed was used to compare the X-ray transmission at different thicknesses of aluminum and copper step wedges. Each step wedge section is a rectangular shape, so evaluation is made much simpler if the rectangles are not rotated with respect to the image. This alignment process aligns the object and flat-field images together and leaves the rectangles of each step aligned with the image.

36 MATERIALS SCIENCE↗

Applying Linear Optics from Closed Orbits Modulation for finding beam-based alignment of harmonic sextupoles

A fast and accurate beam-based alignment (BBA) method for harmonic sextupoles has been devel oped at NSLS-II using Linear Optics from Closed Orbit Modulation (LOCOM). The approach excites the beam with simultaneous sine-wave signals at two fast correctors, chosen with an appropriate phase advance to span the full betatron phase space. This strategy suppresses systematic errors from hysteresis, while additional errors from orbit drift and power-supply calibration are minimized by the short measurement time (a few minutes) and reliance solely on beam-based current-to-field conver sion of the sextupoles, with hysteresis explicitly included. Simulations indicate that Linear Optics from Closed Orbits (LOCO) combined with 0.5 mm local orbit bumps can resolve relative sextupole field offsets (∆k₂) with precision better than 10% of k₂, reflecting to beam-based alignment (BBA) accuracy finer than 50 µm. Moreover, employing machine-learning-optimized local orbit bumps en hances sextupole-induced quadrupole signals in a deterministic manner and maintains orbit stability under large sextupole strength variations (±40%). The proposed method is experimentally validated through proof-of-principle measurements at NSLS-II, demonstrating its potential as a fast, precise, and robust tool for harmonic sextupole alignment.

43 PARTICLE ACCELERATORS↗

A Vertex-Aligned Model for Packing 4-Hexagonal Clusters in a Regular Hexagonal Container

This paper deals with a problem the packing polyhex clusters in a regular hexagonal container. It is a common problem in many applications with various cluster shapes used, but symmetric polyhex is the most useful in engineering due to its geometrical properties. Hence, we concentrate on mathematical modeling in such an application, where using the “bee” tetrahex is chosen for the new Compact Muon Solenoid (CMS) design upgrade, which is one of four detectors used in Large Hadron Collider (LHC) experiment at European Laboratory for Particle Physics (CERN). We start from the existing hexagonal containers with hexagonal cells packed inside, and uniform clustering applied. We compare the center-aligned (CA) and vertex-aligned (VA) models, analyzing cluster rotations providing the increased packing efficiency. We formally describe the geometrical properties of clustering approaches and show that cluster sharing is inevitable at the container border with uniform clustering. In addition, we propose a new vertex-aligned model decreasing the number of shared clusters in the uniform scenario, but with a smaller number of clusters contained inside the container. Also, we describe a non-uniform tetrahex cluster packing scheme in the proposed container model. With the proposed cluster packing solution, it is accomplished that all clusters are contained inside the container region. Since cluster-sharing is completely avoided at the container border, the maximal packing efficiency is obtained compared to the existing models.

97 MATHEMATICS AND COMPUTING↗

Polarization-dependent conversion efficiency of carbon nanotube-Si heterojunction solar cells based on aligned carbon nanotube films

We have fabricated solar cells that implement heterojunctions of Si and aligned carbon nanotube (CNT) films. Polarization-dependent optical absorption of highly aligned CNTs led to polarization-dependent conversion efficiencies, which in turn provided insight into the role of the CNT layer in the power generation mechanism in these heterojunction solar cells. When the incident light polarization was parallel to the CNT alignment direction so that the light absorption in the CNT layer was maximized, the short circuit photocurrent decreased by ~25%. This indicates that electron–hole pair generation in the CNT layer does not directly lead to power generation and that the CNT-Si heterojunctions in our devices are Schottky junctions rather than p–n junctions.

Physics↗

Interstellar Extinction, Polarization, and Grain Alignment in the Sh 2-185 (IC 59 and IC 63) Region

Optical and infrared continuum polarization from the interstellar medium is driven by radiative processes aligning the grains with the magnetic field. While a quantitative, predictive theory of radiative alignment torques (RATs) exists and has been extensively tested, several parameters of the theory remain to be fully constrained. In a recent paper, Medan & Andersson showed that the polarization efficiency (and therefore grain alignment efficiency) at different locations in the wall of the Local Bubble (LB) could be modeled as proportional to the integrated light intensity from the surrounding stars and OB associations. Here we probe that relationship at high radiation field intensities by studying the extinction and polarization in the two reflection nebulae IC 59 and IC 63 in the Sh 2-185 H ii region, illuminated by the B0 IV star γ Cassiopeia. We combine archival visual polarimetry with new seven-band photometry in the Vilnius system, to derive the polarization efficiency from the material. We find that the same linear relationship seen in the LB wall also applies to the Sh 2-185 region, strengthening the conclusion from the earlier study.

47 OTHER INSTRUMENTATION↗

First Detection of the GI-type of Intrinsic Alignments of Galaxies Using the Self-calibration Method in a Photometric Galaxy Survey

Weak gravitational lensing is one of the most promising cosmological probes to constrain dark matter, dark energy, and the nature of gravity at cosmic scales. Intrinsic alignments (IAs) of galaxies have been recognized as one of the most serious systematic effects facing gravitational lensing. Such alignments must be isolated and removed to obtain a pure lensing signal. Furthermore, the alignments are related to the processes of galaxy formation, so their extracted signal can help in understanding such formation processes and improving their theoretical modeling. We report in this Letter the first detection of the gravitational shear–intrinsic shape (GI) correlation and the intrinsic shape–galaxy density (Ig) correlation using the self-calibration method in a photometric redshift survey. These direct measurements are made from the KiDS-450 photometric galaxy survey with a significance of 3.65σ in the third bin for the Ig correlation, and 3.51σ for the GI cross-correlation between the third and fourth bins. The self-calibration method uses the information available from photometric surveys without needing to specify an IA model and will play an important role in validating IA models and IA mitigation in future surveys such as the Rubin Observatory Legacy Survey of Space and Time, Euclid, and WFIRST.

79 ASTRONOMY AND ASTROPHYSICS↗

Multi-Channel Entity Alignment via Name Uniqueness Estimation

When searching for adversarial activity within multiple networks, one of the greatest challenges is how to accurately align entities across different channels of information. This task becomes increasingly difficult when minimal additional information is known about each individual besides a name. Within this study, we analyze name rarity and how it can be used to align people on three distinct data channels: Venmo financial transactions, Reddit online discussions, and a bibliographic data source of academic writings. We explore how the uniqueness of a name can be used to decide if a person is likely the same as another across networks, in the absence of any additional ground truth. While 100 percent confidence cannot be gained, we can use this information to clarify when a possible alignment is more or less likely to be the same individual, increasing our confidence of accurately detecting adversarial behavioral patterns. From the data collected, we found that 0.1% of people had the same name across data sets, and 22.5% of those names are considered rare by our threshold. In our study, we also examine the accuracy of our method and show how real names can be extracted from account usernames, and compared in a similar manner.

Orren, Miquette J.↗

Self-alignment features for III-V ridge process and angled facet die

A method of forming a laser including device is provided that in one embodiment includes providing a laser chip including at least one ridge structure that provides an alignment features. The method further includes bonding a type IV photonics chip to the laser chip, wherein a vertical alignment feature from the type IV photonics chip is inserted in a recess relative to the at least one ridge structure that provides the alignment features of the laser structure.

Barwicz, Tymon↗

Beam-Based Target Alignment for Mu2e

The Mu2e Experiment is a precision experiment at Fermi National Accelerator Laboratory, searching for charged lepton flavor violation (CLFV) in the conversion of a muon to an electron in the presence of an atomic nucleus. In order to achieve the expected single-event sensitivity of $3\times 10^{-17}$ , Mu2e will require an intense muon beam, generated via pion decay. These pions are the product of a proton beam striking a radiatively-cooled tungsten target. In order to maximize pion production and prevent target failure, the beam will have to be aligned with the target center to within 0.5 mm. The production target monitor (PTM) will ensure this alignment. The PTM consists of a series of proportional wire chambers (PWC’s) upstream and downstream of the production target. In this dissertation, I explain the requirements of this detector system and derive the decisions about which detector model to use and how they should be arranged from these requirements. After this, I describe my e xperience building the detectors and show an early use for them in the Mu2e proton beam. I also performed a study of the sensitivity and time resolution of this model of PWC and its electronics, and give the results here. I then describe a series of simulation campaigns which shed light on the interactions between the beam and the target, and how these interactions manifest on the downstream detectors. Finally, I give the target scanning procedure to be used to align the beam and target during experiment start up.

43 PARTICLE ACCELERATORS↗

Heat treatable magnets having improved alignment through application of external magnetic field during binder-assisted molding

Improved manufacturing processes and resulting anisotropic permanent magnets, such as for example alnico permanent magnets, having highly controlled and aligned microstructure in the solid state are provided. A certain process embodiment involves applying a particular orientation and strength of magnetic field to loose, binder-coated magnet alloy powder particles in a compact-forming device as they are being formed into a compact in order to preferentially align the magnet alloy powder particles in the compact. The preferential alignment of the magnet alloy powder particle is locked in place in the compact by the binder after compact forming is complete. After removal from the device, the compact can be subjected to a subsequent sintering or other heat treating operation.

Kassen, Aaron G.↗

Lens alignment system and method

A lens alignment system and method is disclosed. The disclosed system/method integrates one or more lens retaining members/tubes (LRM/LRT) and focal length spacers (FLS) each comprising a metallic material product (MMP) specifically manufactured to have a thermal expansion coefficient (TEC) in a predetermined range via selection of the individual MMP materials and an associated MMP manufacturing process providing for controlled TEC. This controlled LRM/LRT TEC enables a plurality of optical lenses (POL) fixed along a common optical axis (COA) by the LRM/LRT to maintain precise interspatial alignment characteristics that ensure consistent and/or controlled series focal length (SFL) within the POL to generate a thermally neutral optical system (TNOS). Integration of the POL using this LRM/LRT/FLS lens alignment system reduces the overall TNOS implementation cost, reduces the overall TNOS mass, reduces TNOS parts component count, and increases the reliability of the overall optical system.

Monroe, James Alan↗