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At least 145 records · Page 8

Staphylococcus aureus FtsZ and PBP4 bind to the conformationally dynamic N-terminal domain of GpsB

In the Firmicutes phylum, GpsB is a membrane associated protein that coordinates peptidoglycan synthesis with cell growth and division. Although GpsB has been studied in several bacteria, the structure, function, and interactome of Staphylococcus aureus GpsB is largely uncharacterized. To address this knowledge gap, we solved the crystal structure of the N-terminal domain of S. aureus GpsB, which adopts an atypical, asymmetric dimer, and demonstrates major conformational flexibility that can be mapped to a hinge region formed by a three-residue insertion exclusive to Staphylococci. When this three-residue insertion is excised, its thermal stability increases, and the mutant no longer produces a previously reported lethal phenotype when overexpressed in Bacillus subtilis. In S. aureus, we show that these hinge mutants are less functional and speculate that the conformational flexibility imparted by the hinge region may serve as a dynamic switch to fine-tune the function of the GpsB complex and/or to promote interaction with its various partners. Furthermore, we provide the first biochemical, biophysical, and crystallographic evidence that the N-terminal domain of GpsB binds not only PBP4, but also FtsZ, through a conserved recognition motif located on their C-termini, thus coupling peptidoglycan synthesis to cell division. Taken together, the unique structure of S. aureus GpsB and its direct interaction with FtsZ/PBP4 provide deeper insight into the central role of GpsB in S. aureus cell division.

59 BASIC BIOLOGICAL SCIENCES↗

Conformal coordinates associated with uniformly accelerated motion

Specific problems in the theory of relativity are often simplified by an appropriate choice of the coordinate system. Restricted conformal coordinates provide an especially simple analysis of motion with uniform acceleration, known as hyperbolic motion. Conformal coordinates x', t' may be obtained from Cartesian coordinates x, t by the transformation x'+ct'=F(x+ct) and x'-ct'=G(x-ct), where c is the velocity of light. A variable motion of the x' system is determined by the choice of the functions F and G.

Jones, R. T.↗

Conformal coordinates associated with space-like motions

Conformal transformations in two dimensions provide a simple extension of the Lorentz transformation. The velocity of light appears in such transformations as a singular velocity rather than as an upper limit for the velocity. A well ordered branch of the theory exists for velocities in excess of the velocity of light. If the velocity of a point exceeds the singular velocity in an inertial system, then the conformal representation of the motion is no longer uniform, but contains a folded region. However, the branching of the transformation may be determined so that the elapsed time along the path of such a motion remains positive. Kinematic relations on the other side of the singular velocity seem to complement the usual results of relativity theory in an interesting way. Thus it is known that motion at the speed of light occurs along a null geodesic, and hence corresponds in a certain sense to motion at infinite velocity. The complementary relation is that a motion of infinite velocity corresponds in the same sense to motion at the speed of light.

Jones, R. T.↗

A body-fitted conformal mapping method with grid-spacing control

It is demonstrated by analyses and by numerical illustrations that any arbitrarily prescribed contour, open or closed, can be mapped conformally onto a simple contour, such as a unit circle, using any arbitrarily prescribed distribution of scale factor of transformation. This flexibility of selecting a scale factor distribution on the contour is not in violation of the well-known Riemann's uniqueness theory for conformal mapping.

Wu, J. C.↗

A search for the lowest-energy conformer of interstellar glycine

The first search for the lowest-energy conformation of interstellar glycine has been carried out. An emission line has been detected in Sgr B2 which is coincident in frequency with the J(K-K+) = 14(1, 14)-13(1, 13) transition of conformer I glycine; while the carrier of the observed line is uncertain, no other frequency-coincident species are known, and hence glycine cannot be ruled out. Several previously unidentified lines have been identified as methyl formate. Evidence for the existence of the elusive interstellar ethylene oxide, the only reported interstellar ring-structure molecule, is discussed.

Hollis, J. M.↗

Fast generation of three-dimensional computational boundary-conforming periodic grids of C-type

A fast computer program, GRID3C, was developed to generate multilevel three dimensional, C type, periodic, boundary conforming grids for the calculation of realistic turbomachinery and propeller flow fields. The technique is based on two analytic functions that conformally map a cascade of semi-infinite slits to a cascade of doubly infinite strips on different Riemann sheets. Up to four consecutively refined three dimensional grids are automatically generated and permanently stored on four different computer tapes. Grid nonorthogonality is introduced by a separate coordinate shearing and stretching performed in each of three coordinate directions. The grids are easily clustered closer to the blade surface, the trailing and leading edges and the hub or shroud regions by changing appropriate input parameters. Hub and duct (or outer free boundary) have different axisymmetric shapes. A vortex sheet of arbitrary thickness emanating smoothly from the blade trailing edge is generated automatically by GRID3C. Blade cross sectional shape, chord length, twist angle, sweep angle, and dihedral angle can vary in an arbitrary smooth fashion in the spanwise direction.

Dulikravich, D. S.↗

An extensive galactic search for conformer II glycine

The most extensive galactic search reported to date for conformer II glycine, a higher energy form of the simplest amino acid has been conducted. The search utilized four glycine transitions at centimeter wavelengths and 21 at millimeter wavelengths to observe 18 galactic molecular sources and one comet. No conformer II glycine lines were detected, and measurements of representative sources were used to compute upper limits on total column densities. Several unidentified lines were detected and are reported here with some suggested possible identifications.

Snyder, L. E.↗

The geometric properties of Landsat-5 Thematic Mapper data and their conformity to Landsat-4 data and to earth's surface geometry

The geometry of two TIPS processed Landsat-5 Thematic Mapper scenes was analyzed and compared with that of SCROUNGE processed Landsat-4 data. Swath-to-swath and band-to-band registration of Washington, DC, and northeastern Iowa scenes was found to be similar to or better than that of Landsat-4 data. Results indicate a high degree of geometric conformity between the images produced by the different systems. The geometric conformity of the TIPS processed images to the Space Oblique Mercator projection, however, proved to be less accurate than the targeted processing error of 15 meters.

Walker, R. E.↗

Qualitative evaluation of a conformal velocity vector display for use at high angles-of-attack in fighter aircraft

A piloted simulation study was conducted to evaluate the utility of a display device designed to illustrate graphically and conformally the approximate location of a fighter aircraft's velocity vector. The display device consisted of two vertical rows of light emitting diodes (LED's) located toward the center of the cockpit instrument panel to each side of the control stick. The light strings provided a logical extension of the head up display (HUD) velocity vector symbol at flight path angles which exceeded the HUD field-of-view. Four test subjects flew a modified F/A-18 model with this display in an air-to-air engagement task against an equally capable opponent. Their responses to a questionnaire indicated that the conformal velocity vector information could not be used during the scenarios investigated due to the inability to visually track a target and view the lights simultaneously.

Jones, Denise R.↗

A conformal block structured grid for turbomachinery cascades in two dimensions

A block structured conformal transformation is presented for application to turbomachinery cascades. In comparison with the traditional single block cases that are, at best, supplemented with branch cuts, there is a richer variety of choices for the grid topology. The choice presented leads to a substantial improvement in the grid quality. This is reflected in a relatively uniform covering of the cascade region. While grid clustering is not intended or supplied with the block conformal structure, it can be injected afterwards. When viewed as a controlled experiment, the present study provides a significant example of the effect of grid topology upon the grid quality. In a larger sense, this puts some focus upon the effects of grid topology in more general situations.

Wang, Zhu↗

Radiation and scattering from cylindrically conformal printed antennas

Microstrip patch antennas offer considerable advantages in terms of weight, aerodynamic drag, cost, flexibility, and observables over more conventional protruding antennas. These flat patch antennas were first proposed over thirty years ago by Deschamps in the United States and Gutton and Baisinot in France. Such antennas have been analyzed and developed for planar as well as curved platforms. However, the methods used in these designs employ gross approximations, suffer from extreme computational burden, or require expensive physical experiments. The goal of this thesis is to develop accurate and efficient numerical modeling techniques which represent actual antenna structures mounted on curved surfaces with a high degree of fidelity. In this thesis, the finite element method is extended to cavity-backed conformal antenna arrays embedded in a circular, metallic, infinite cylinder. Both the boundary integral and absorbing boundary mesh closure conditions will be used for terminating the mesh. These two approaches will be contrasted and used to study the scattering and radiation behavior of several useful antenna configurations. An important feature of this study will be to examine the effect of curvature and cavity size on the scattering and radiation properties of wraparound conformal antenna arrays.

Kempel, Leo C.↗

A well-posed numerical method to track isolated conformal map singularities in Hele-Shaw flow

We present a new numerical method for calculating an evolving 2D Hele-Shaw interface when surface tension effects are neglected. In the case where the flow is directed from the less viscous fluid into the more viscous fluid, the motion of the interface is ill-posed; small deviations in the initial condition will produce significant changes in the ensuing motion. This situation is disastrous for numerical computation, as small round-off errors can quickly lead to large inaccuracies in the computed solution. Our method of computation is most easily formulated using a conformal map from the fluid domain into a unit disk. The method relies on analytically continuing the initial data and equations of motion into the region exterior to the disk, where the evolution problem becomes well-posed. The equations are then numerically solved in the extended domain. The presence of singularities in the conformal map outside of the disk introduces specific structures along the fluid interface. Our method can explicitly track the location of isolated pole and branch point singularities, allowing us to draw connections between the development of interfacial patterns and the motion of singularities as they approach the unit disk. In particular, we are able to relate physical features such as finger shape, side-branch formation, and competition between fingers to the nature and location of the singularities. The usefulness of this method in studying the formation of topological singularities (self-intersections of the interface) is also pointed out.

Baker, Gregory↗

Composite, Cryogenic, Conformal, Common Bulkhead, Aerogel-Insulated Tank (CBAT) Materials and Processing Methodologies

A viewgraph presentation outlines the current status and future activities of the composite, cryogenic, conformal, common bulkhead, aerogel-insulated tank (CBAT). Each term (composite, cryogenic, conformal, etc.) is explained. The fabrication method for the CBAT is described, including challenges and their solutions. Near term and long term goals are discussed.

Kovach, Michael P.↗

Conformational Characteristics of Poly(tetrafluoroethylene) (PTFE) Based Upon Ab Initio Electronic Structure Calculations on Model Molecules

Conformational energy contours of perfluoroalkanes, determined from ab initio calculations, confirm the well-known spitting of trans states into two minima at plus or minus 17 degrees but also show that the gauche states split as well, with minima at plus or minus 124 degrees and plus or minus 84 in order to relieve steric crowding. The directions of such split distortions from the perfectly staggered states are strongly coupled for adjacent pairs of bonds in a manner identical to the intradyad pair for poly (isobutylene) chains. These conformational characteristics are fully represented by a six-state rotational isomeric state (RIS) model for PTFE comprised of t(+), t(-), g(sup +)+, g(sup +)-, g(sup -) + and g(sup -)-states, located at the split energy minima. The resultant 6 x 6 statistical weight matrix is described by first-order interaction parameters for the g+(+) (ca. 0.6 kcal/mol) and g+- (ca. 2.0 kcal/mol) states, and second order parameters for the g(sup +)+g(sup +)+ (ca 0.6 kcal/mol) and g(sup +)+g(sup -)+ (ca. 1.0 kcal/mol) states. This six-state RIS model, without adjustment of the geometric or energy parameters as determined from the ab initio calculations, predicts the unperturbed chain dimensions and the fraction of gauche bonds as a function of temperature for PTFE in good agreement with available experimental values.

Smith, Grant D.↗

Composite,Cryogenic, Conformal, Common Bulkhead, Aerogel-Insulated Tank (CBAT)

The objective of the Composite, Cryogenic, Conformal, Common Bulkhead, Aerogel-insulated Tank (CBAT) Program is to evaluate the potential for using various new technologies in next generation Reusable Launch Vehicles (RLVs) through design, fabrication, and testing of a subscale system. The new technologies include polymer matrix composites (PMCs), conformal propellant storage, common bulkhead packaging, and aerogel insulation. The National Aeronautics and Space Administration (NASA) and Thiokol Propulsion from Cordant Technologies are working together to develop a design and the processing methodologies which will allow integration of these technologies into a single structural component assembly. Such integration will significantly decrease subsystem weight and reduce shape, volume, and placement restrictions, thereby enhancing overall launch system performance. This paper/presentation focuses on the challenges related to materials and processes that were encountered and overcome during this program to date.

Roberts, J. K.↗

Pilot Non-Conformance to Alerting System Commands During Closely Spaced Parallel Approaches

Pilot non-conformance to alerting system commands has been noted in general and to a TCAS-like collision avoidance system in a previous experiment. This paper details two experiments studying collision avoidance during closely-spaced parallel approaches in instrument meteorological conditions (IMC), and specifically examining possible causal factors of, and design solutions to, pilot non-conformance.

Pritchett, Amy R.↗

Reconstruction of the Acoustic Field Using a Conformal Array

Near-field acoustical holography (NAH) requires the measurement of the near-field pressure field over a conformal and closed surface in order to recover the acoustic field on a nearby surface. We are interested in the reconstruction of the acoustic field over the fuselage of a Boeing 757 airplane when pressure data is available over an array of microphones that are conformal to the fuselage surface. In this case the strict NAH theory does not hold, but still there are techniques used to overcome this difficulty. The best known is patch NAH, which has been used for planar surfaces. In this work we will discuss two new techniques used for surfaces with an arbitrarily shape: patch inverse boundary element methods (IBEM) and patch equivalent sources method (ESM). We will discuss the theoretical justification of the method and show reconstructions for in-flight data taken inside a Boeing 757 airplane.

Valdivia, Nichlas P.↗