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At least 145 records · Page 8

The kinematic properties of Milky Way stellar halo populations

ABSTRACT In the Gaia era, stellar kinematics are extensively used to study Galactic halo stellar populations, to search for halo structures, and to characterize the interface between the halo and hot disc populations. We use distribution function-based models of modern data sets with 6D phase space data to qualitatively describe a variety of kinematic spaces commonly used in the study of the Galactic halo. Furthermore, we quantitatively assess how well each kinematic space can separate radially anisotropic from isotropic halo populations. We find that scaled action space (the ‘action diamond’) is superior to other commonly used kinematic spaces at this task. We present a new, easy to implement selection criterion for members of the radially anisotropic Gaia–Enceladus merger remnant. Assuming a 1:1 ratio of Gaia–Enceladus stars to more isotropic halo, we find our selection achieves a sample purity of 86 per cent in our models with respect to contamination from the more isotropic halo. We compare this criterion to literature criteria, finding that it produces the highest purity in the resulting samples, at the expense of a modest reduction in completeness. We also show that selection biases that underlie nearly all contemporary spectroscopic data sets can noticeably impact the E−Lz distribution of samples in a manner that may be confused for real substructure. We conclude by providing recommendations for how authors should use stellar kinematics in the future to study the Galactic stellar halo.

79 ASTRONOMY AND ASTROPHYSICS↗

Evaluation of Atmospheric Conditions Leading to a Fumigation Event

During the afternoon of 30 January 2022, the Savannah River Site experienced unusual temperature conditions leading to a fumigation event that triggered safety alarms and caused considerable confusion about the cause of the event. Normally, it is assumed that fumigation events occur early in the day once surface heating has begun. While most fumigation events are related to the breakup of a nocturnal inversion, this event was related to synoptic atmospheric conditions, which provided a more unique scenario that led to the fumigation event. The unusual synoptic atmospheric conditions led to the downwash and fumigation of the elevated plume, causing a pollutant to mix rapidly to the surface. These conditions could have potentially harmed workers within the facility, since the plume was directed toward a building air intake system. Here, we seek to outline the conditions that led to this unusual fumigation event and provide results of two-dimensional (2D) wind modeling of the event to characterize these conditions for future operational guidance of the facility air intake systems. This work sets the groundwork for future high-resolution modeling to explore the mechanisms and thresholds affecting fumigation on the facility-specific short distance scales and improve forecasting of non-standard fumigation events to protect human health.

54 ENVIRONMENTAL SCIENCES↗

2022 Prentice Award Lecture: Advancing Retinal Imaging and Visual Function in Patient Management and Disease Mechanisms

Patient-based research plays a key role in probing basic visual mechanisms. Less-well recognized is the role of patient-based retinal imaging and visual function studies in elucidating disease mechanisms, which are accelerated by advances in imaging and function techniques and are most powerful when combined with the results from histology and animal models. A patient's visual complaints can be one key to patient management, but human data are also key to understanding disease mechanisms. Unfortunately, pathological changes can be difficult to detect. Before advanced retinal imaging, the measurement of visual function indicated the presence of pathological changes that were undetectable with existing clinical examination. Over the past few decades, advances in retinal imaging have increasingly revealed the unseen. This has led to great strides in the management of many diseases, particularly diabetic retinopathy and macular edema, and age-related macular degeneration. It is likely widely accepted that patient-based research, as in clinical trials, led to such positive outcomes. Both visual function measures and advanced retinal imaging have clearly demonstrated differences among retinal diseases. Contrary to initial thinking, sight-threatening damage in diabetes occurs to the outer retina and not only to the inner retina. This has been clearly indicated in patient results but has only gradually entered the clinical classifications and understanding of disease etiology. There is strikingly different pathophysiology for age-related macular degeneration compared with photoreceptor and retinal pigment epithelial genetic defects, yet research models and even some treatments confuse these. It is important to recognize the role that patient-based research plays in probing basic visual mechanisms and elucidating disease mechanisms, combining these findings with the concepts from histology and animal models. Thus, this article combines sample instrumentation from my laboratory and progress in the fields of retinal imaging and visual function.

60 APPLIED LIFE SCIENCES↗

Rethinking 𝛼−RuCl 3 : Parameters, models, and phase diagram

RuCl 3 was likely the first ever deliberately synthesized ruthenium compound, following the discovery of the 44 Ru element in 1844. For a long time it was known as an oxidation catalyst, with its physical properties being discrepant and confusing, until a decade ago when its allotropic form 𝛼−RuCl 3 rose to exceptional prominence. This “rediscovery” of 𝛼−RuCl 3 has not only reshaped the hunt for a material manifestation of the Kitaev spin liquid, but it has opened the floodgates of theoretical and experimental research in the many unusual phases and excitations that the anisotropic-exchange magnets as a class of compounds have to offer. Given its importance for the field of Kitaev materials, it is astonishing that the low-energy spin model that describes this compound and its possible proximity to the much-desired spin-liquid state is still a subject of significant debate ten years later. In the present study, we argue that the existing key phenomenological observations put strong natural constraints on the effective microscopic spin model of 𝛼−RuCl 3 , and specifically on its spin-orbit-induced anisotropic-exchange parameters that are responsible for the nontrivial physical properties of this material. These constraints allow one to focus on the relevant region of the multidimensional phase diagram of the 𝛼−RuCl 3 model, suggest an intuitive description of it via a different parametrization of the exchange matrix, offer a unifying view on the earlier assessments of its parameters, and bring closer together several approaches to the derivation of anisotropic-exchange models. We explore extended phase diagrams relevant to the 𝛼−RuCl 3 parameter space using quasiclassical, Luttinger-Tisza, exact diagonalization, and density-matrix renormalization-group methods, demonstrating a remarkably close quantitative accord between them on the general structure and hierarchy of the phases, with the zigzag, ferromagnetic, and incommensurate phases that are proximate to each other. As a result, one of the highlights is the detailed agreement on the nature of the incommensurate phases that realize two distinct counterrotating helical states.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Classical analog of quantum models in synthetic dimensions

We introduce a classical analog of quantum matter in ultracold molecule-synthetic or Rydberg atom-synthetic dimensions, by extending the Potts model to include interactions J 1 between atoms adjacent in both real and synthetic space and studying its finite-temperature properties. For intermediate values of J 1 , the resulting phases and phase diagrams are similar to those of the clock and Villain models, in which three phases emerge. There exists a sheet phase analogous to that found in quantum synthetic dimension models between the high-temperature disordered phase and the low-temperature ferromagnetic phase. Furthermore, we also employ machine learning to uncover nontrivial features of the phase diagram using the learning by confusion approach, which is able to discern several successive phase transitions.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Magnetic bulk photovoltaic effect: Strong and weak field

Shift current and ballistic current have been proposed to explain the bulk photovoltaic effect (BPVE), and there have been experiments designed to separate the two mechanisms. These experiments are based on the assumption that under magnetic field, ballistic current can have a Hall effect while the shift current cannot, which is from some energy-scale arguments and has never been proven. A recent work [D. Hornung and R. von Baltz, Phys. Rev. B 103, 195203 (2021)] using quantum transport formalism achieves a conclusion that shift current indeed has a Hall current, seemingly contradicting the previous assumption and making the situation more confusing. Moreover, the behavior of BPVE under strong magnetic field is still unexplored. In this Letter, using a minimal two-dimensional tight-binding model, we carry out a systematic numerical study of the BPVE under weak and strong magnetic field by treating the field in a nonperturbative way. Further, our model clearly shows the appearance of the magnetically induced ballistic current along the transverse direction, which agrees with the previous predictions, and interestingly a sizable longitudinal response of the shift current is also observed, a phenomenon that is not captured by any existing theories where the magnetic field is treated perturbatively. More surprisingly, drastically different shift current is found in the strong-field regime, and the evolution from weak to strong field resembles a phase transition. We hope that our work could resolve the debate over the behavior of BPVE under magnetic field, and the strong-field behavior of shift current is expected to inspire more studies on the relation between nonlinear optics and quantum geometry.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Supervised and unsupervised machine learning of structural phases of polymers adsorbed to nanowires

Here, we identify configurational phases and structural transitions in a polymer nanotube composite by means of machine learning. We employ various unsupervised dimensionality reduction methods, conventional neural networks, as well as the confusion method, an unsupervised neural-network-based approach. We find neural networks are able to reliably recognize all configurational phases that have been found previously in experiment and simulation. Furthermore, we locate the boundaries between configurational phases in a way that removes human intuition or bias. This could be done before only by relying on preconceived, ad hoc order parameters.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Quasiprobabilistic Readout Correction of Midcircuit Measurements for Adaptive Feedback via Measurement Randomized Compiling

Quantum measurements are a fundamental component of quantum computing. However, on present-day quantum computers, measurements can be more error prone than quantum gates and are susceptible to nonunital errors as well as nonlocal correlations due to measurement crosstalk. While readout errors can be mitigated in postprocessing, this is inefficient in the number of qubits due to a combinatorially large number of possible states that need to be characterized. In this work, we show that measurement errors can be tailored into a simple stochastic error model using randomized compiling, enabling the efficient mitigation of readout errors via quasiprobability distributions reconstructed from the measurement of a single preparation state in an exponentially large confusion matrix. We demonstrate the scalability and power of this approach by correcting readout errors without matrix inversion on a large number of different preparation states applied to a register of eight superconducting transmon qubits. Moreover, we show that this method can be extended to midcircuit measurements used for active feedback via quasiprobabilistic error cancellation, and we demonstrate the correction of measurement errors on an ancilla qubit used to detect and actively correct bit-flip errors on an entangled memory qubit. Our approach enables the correction of readout errors on large numbers of qubits and offers a strategy for correcting readout errors in adaptive circuits in which the results of midcircuit measurements are used to perform conditional operations on nonlocal qubits in real time.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Thermally induced structural competitiveness and metastability of body-centered-cubic iron under nonequilibrium conditions

The structure and stability of iron near melting at multi-megabar pressures are of significant interest in high pressure physics and earth and planetary sciences. While the body-centered cubic (BCC) phase is generally recognized as unstable at lower temperatures, its stability relative to the hexagonal close-packed (HCP) phase at high temperatures (approximately 0.5 eV) in the Earth’s inner core (IC) remains a topic of ongoing theoretical and experimental debate. Motivated by a series of studies attempting to understand the state of the IC and resulting in contradictory findings, we aim to explore the physical factors that may contribute to this confusion in a broader context. Our ab initio calculations show a significant drop in energy, the emergence of a plateau and a local minimum in the potential energy surface, and stabilization of all phonon modes of BCC iron at elevated electron temperatures (>1–1.5 eV). These effects increase the competition among the BCC, HCP, and the face-centered cubic (FCC) phases and lead to the metastability of the BCC structure. Furthermore, at pressure-temperature conditions relevant to the IC, we can expect substantial coexistence of FCC and HCP iron due to their similar free energies and low transition barrier (∼0.2 eV/atom), and the thermodynamic stability of BCC iron is enhanced by its substantial lattice vibration entropy. In conclusion, these findings provide a clear theoretical framework for understanding iron phase relations and solidification processes, both experimentally and in the IC.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Illustrated formalisms for total scattering data: a guide for new practitioners

The total scattering method is the simultaneous study of both the real- and reciprocal-space representations of diffraction data. While conventional Bragg-scattering analysis (employing methods such as Rietveld refinement) provides insight into the average structure of the material, pair distribution function (PDF) analysis allows for a more focused study of the local atomic arrangement of a material. Generically speaking, a PDF is generated by Fourier transforming the total measured reciprocal-space diffraction data (Bragg and diffuse) into a real-space representation. However, the details of the transformation employed and, by consequence, the resultant appearance and weighting of the real-space representation of the system can vary between different research communities. As the worldwide total scattering community continues to grow, these subtle differences in nomenclature and data representation have led to conflicting and confusing descriptions of how the PDF is defined and calculated. This paper provides a consistent derivation of many of these different forms of the PDF and the transformations required to bridge between them. Some general considerations and advice for total scattering practitioners in selecting and defining the appropriate choice of PDF in their own research are presented. This contribution aims to benefit people starting in the field or trying to compare their results with those of other researchers.

36 MATERIALS SCIENCE↗

Global Explainability of A Deep Abstaining Classifier for Cancer Pathology Reports

We present a global explainability method to characterize sources of errors in a real-world multitask deep abstaining classifier (DAC), in the context of cancer histology prediction. Our multitask classifier, currently deployed for automated annotation of cancer pathology reports from NCI-SEER registries, was trained and evaluated on 1.04 million hand-annotated samples and makes simultaneous predictions of cancer site, subsite, histology, laterality, and behavior for each report. The DAC framework enables the model to abstain on ambiguous reports and confusing classes to achieve the target accuracy on the retained (non-abstained) samples, but at the cost of decreased coverage. Requiring 97% accuracy on the histology task caused our model to retain only 22% of all samples, mostly the less ambiguous and common classes. Local explainability with the GradInp technique provided a computationally efficient way of obtaining contextual reasoning for hundreds of thousands of individual predictions. Our method, involving dimensionality reduction of approximately 13000 aggregated local explanations (ALE), offers a tractable path to true global explainability. It enabled identification of sources of errors in histology classification, globally, as hierarchical complexity among classes, label noise, insufficient information, and conflicting evidence. This suggests several strategies for iterative improvement of our DAC, including well-designed exclusion criteria, focused annotation, and reduced penalties for errors involving hierarchically related classes.

59 BASIC BIOLOGICAL SCIENCES↗

Adversarial Sampling-Based Motion Planning

In this report there are many scenarios in which a mobile agent may not want its path to be predictable. Examples include preserving privacy or confusing an adversary. However, this desire for deception can conflict with the need for a low path cost. Optimal plans such as those produced by RRT* may have low path cost, but their optimality makes them predictable. Similarly, a deceptive path that features numerous zig-zags may take too long to reach the goal. We address this trade-off by drawing inspiration from adversarial machine learning. We propose a new planning algorithm, which we title Adversarial RRT*. Adversarial RRT* attempts to deceive machine learning classifiers by incorporating a predicted measure of deception into the planner cost function. Adversarial RRT* considers both path cost and a measure of predicted deceptiveness in order to produce a trajectory with low path cost that still has deceptive properties. We demonstrate the performance of Adversarial RRT*, with two measures of deception, using a simulated Dubins vehicle. We show how Adversarial RRT* can decrease cumulative RNN accuracy across paths to 10%, compared to 46% cumulative accuracy on near-optimal RRT* paths, while keeping path length within 16% of optimal. We also present an example demonstration where the Adversarial RRT* planner attempts to safely deliver a high value package while an adversary observes the path and tries to intercept the package.

42 ENGINEERING↗

1-D Convolutional Graph Convolutional Networks for Fault Detection in Distributed Energy Systems

This paper presents a 1-D convolutional and graph convolutional networks for fault detection in microgrids. The combination of 1-D convolutional neural networks (1D-CNN) and graph convolutional networks (GCN) helps extract both spatial-temporal correlations from the voltage measurements in microgrids. The fault detection scheme includes fault event detection, fault type and phase classification, and fault location. There are five neural network model training to handle these tasks. Transfer learning and fine-tuning are applied to reduce training efforts. The combined 1-D convolutional and graph convolutional networks (1D-CGCN) is compared with the traditional ANN structure on the Potsdam 13-bus microgrid dataset. The accuracy of 99.5%, 98.4%, 99.2%, and 95.5% are achieved in fault event detection, fault type classification, fault phase identification, and fault location respectively. The detailed confusion matrices of fault type and fault phase classification are provided for validation.

deep neural network↗

Clarifying Terminology in Microbial Ecology: A Call for Precision in Scientific Communication

The rapid evolution of microbiology as a field of research has led to the introduction of new terminology and the adaptation of existing terms. However, inconsistencies in the use of these terms, including variations across different scientific disciplines, can lead to confusion and miscommunication within the scientific community. This article discusses the importance of precise terminology in microbiome research, highlighting examples where terms have been misused or redefined without clear justification. We also present a list of frequently used terms in microbial ecology along with their specific definitions. We argue that the misuse of terminology can hinder scientific progress by creating ambiguity and misunderstanding. To address this, we propose a set of guidelines for the consistent use of key terms and provide clear definitions for some of the most commonly misused or newly introduced terms in the field. The definitions provided herein will also function as a guide for young researchers new to the field of microbial ecology. Accurate and consistent use of terminology is crucial for effective communication and collaboration in microbiology research. By adhering to standardised definitions, researchers can ensure that their work is clearly communicated and contributes meaningfully to the progress of science.

definitions↗

Beyond denitrification: The role of microbial diversity in controlling nitrous oxide reduction and soil nitrous oxide emissions

Many biotic and abiotic processes contribute to nitrous oxide (N 2 O) production in the biosphere, but N 2 O consumption in the environment has heretofore been attributed primarily to canonical denitrifying microorganisms. The nosZ genes encoding the N 2 O reductase enzyme, NosZ, responsible for N 2 O reduction to dinitrogen are now known to include two distinct groups: the well-studied Clade I which denitrifiers typically possess, and the novel Clade II possessed by diverse groups of microorganisms, most of which are non-denitrifiers. Clade II N 2 O reducers could play an important, previously unrecognized role in controlling N 2 O emissions for several reasons, including: (1) the consumption of N 2 O produced by processes other than denitrification, (2) hypothesized non-respiratory functions of NosZ as an electron sink or for N 2 O detoxification, (3) possible differing enzyme kinetics of Clade II NosZ compared to Clade I NosZ, and (4) greater nosZ gene abundance for Clade II compared to Clade I in soils of many ecosystems. Despite the potential ecological significance of Clade II NosZ, a census of 800 peer-reviewed original research articles discussing nosZ and published from 2013 to 2019 showed that the percentage of articles evaluating or mentioning Clade II nosZ increased from 5% in 2013 to only 22% in 2019. The census revealed that the slowly spreading awareness of Clade II nosZ may result in part from disciplinary silos, with the percentage of nosZ articles mentioning Clade II nosZ ranging from 0% in Agriculture and Agronomy journals to 32% in Multidisciplinary Sciences journals. In addition, inconsistent nomenclature for Clade I nosZ and Clade II nosZ, with 17 different terminologies used in the literature, may have created confusion about the two distinct groups of N 2 O reducers. Furthermore, we provide recommendations to accelerate advances in understanding the role of the diversity of N 2 O reducers in regulating soil N 2 O emissions.

59 BASIC BIOLOGICAL SCIENCES↗

Chaos, percolation and the coronavirus spread: a two-step model

We discuss a two-step model for the rise and decay of a new coronavirus (Severe Acute Respiratory Syndrome-CoV-2) first reported in December 2019, COVID-19. The first stage is well described by the same equation for turbulent flows, population growth and chaotic maps: a small number of infected, d 0 , grows exponentially to a saturation value, d ∞ . The typical growth time (aggressive spreading of the virus) is given by τ = 1/λ where λ is the Lyapunov exponent. After a time t crit determined by social distancing and/or other measures, the spread decreases exponentially analogous to nuclear decays and non-chaotic maps. Some countries, like China, S. Korea and Italy, are in this second stage while others including the USA are near the end of the growth stage. The model predicted 15,000 (±2250) casualties for the Lombardy region (Italy) at the end of the spreading around May 10, 2020. Without the quarantine, the casualties would have been more than 50,000, one hundred days after the start of the pandemic. Here, the data from the 50 US states are of very poor quality because of an extremely late and confused response to the pandemic, resulting unfortunately in a large number of casualties, more than 70,000 on May 6, 2020, and more than 170,000 on August 21, 2020. S. Korea, notwithstanding the high population density (511/km 2 ) and the closeness to China, responded best to the pandemic with 255 deceased as of May 6, 2020, and 301 on August 21, 2020.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Toward the Detection of Polyglot Files

Standardized file types play a key role in the development and use of computer software. However, it is possible to confound standardized file type processing by creating a file that is valid in multiple file types. The resulting polyglot (many languages) file can confuse file type identification, allowing elements of the file to evade analysis. This is especially problematic for malware detection systems that rely on file type identification for feature extraction. Although work has been done to identify file types using more comprehensive methods than file signatures, accurate identification of polyglot files remains an open problem. Since malware detection systems routinely perform file type-specific feature extraction, polyglot files need to be filtered out prior to ingestion by these systems. Otherwise, malicious content could pass through undetected. To address the problem of polyglot detection we assembled a data set using the mitra tool. We then evaluated the performance of the most commonly used file identification tools, including file, polydet, binwalk, and TrID. Our analysis demonstrates that existing file type detection tools fail to provide reliable polyglot detection. We then evaluated the ability of a range of machine and deep learning models to detect polyglot files. The most performant models were MalConv2 and Catboost, which demonstrated the highest recall on our data set with 95.16% and 95.45%, respectively. These models outperformed existing methods and could be incorporated into a malware detector’s file processing pipeline to filter out potentially malicious polyglots before file type-dependent feature extraction takes place.

Koch, Luke↗

Toward the Detection of Polyglot Files

Standardized file types play a key role in the development and use of computer software. However, it is possible to confound standardized file type processing by creating a file that is valid in multiple file types. The resulting polyglot (many languages) file can confuse file type identification, allowing elements of the file to evade analysis. This is especially problematic for malware detection systems that rely on file type identification for feature extraction. Although work has been done to identify file types using more comprehensive methods than file signatures, accurate identification of polyglot files remains an open problem. Since malware detection systems routinely perform file type-specific feature extraction, polyglot files need to be filtered out prior to ingestion by these systems. Otherwise, malicious content could pass through undetected. To address the problem of polyglot detection we assembled a data set using the mitra tool. We then evaluated the performance of the most commonly used file identification tools, including file, polydet, binwalk, and TrID. Our analysis demonstrates that existing file type detection tools fail to provide reliable polyglot detection. We then evaluated the ability of a range of machine and deep learning models to detect polyglot files. The most performant models were MalConv2 and Catboost, which demonstrated the highest recall on our data set with 95.16% and 95.45%, respectively. These models outperformed existing methods and could be incorporated into a malware detector’s file processing pipeline to filter out potentially malicious polyglots before file type-dependent feature extraction takes place.

Koch, Lucas↗