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At least 145 records · Page 8

A two-stage method for microcalcification cluster segmentation in mammography by deformable models

Purpose: Segmentation of microcalcification (MC) clusters in x-ray mammography is a difficult task for radiologists. Accurate segmentation is prerequisite for quantitative image analysis of MC clusters and subsequent feature extraction and classification in computer-aided diagnosis schemes. Methods: In this study, a two-stage semiautomated segmentation method of MC clusters is investigated. The first stage is targeted to accurate and time efficient segmentation of the majority of the particles of a MC cluster, by means of a level set method. The second stage is targeted to shape refinement of selected individual MCs, by means of an active contour model. Both methods are applied in the framework of a rich scale-space representation, provided by the wavelet transform at integer scales. Segmentation reliability of the proposed method in terms of inter and intraobserver agreements was evaluated in a case sample of 80 MC clusters originating from the digital database for screening mammography, corresponding to 4 morphology types (punctate: 22, fine linear branching: 16, pleomorphic: 18, and amorphous: 24) of MC clusters, assessing radiologists’ segmentations quantitatively by two distance metrics (Hausdorff distance—HDIST{sub cluster}, average of minimum distance—AMINDIST{sub cluster}) and the area overlap measure (AOM{sub cluster}). The effect of the proposed segmentation method on MC cluster characterization accuracy was evaluated in a case sample of 162 pleomorphic MC clusters (72 malignant and 90 benign). Ten MC cluster features, targeted to capture morphologic properties of individual MCs in a cluster (area, major length, perimeter, compactness, and spread), were extracted and a correlation-based feature selection method yielded a feature subset to feed in a support vector machine classifier. Classification performance of the MC cluster features was estimated by means of the area under receiver operating characteristic curve (Az ± Standard Error) utilizing tenfold cross-validation methodology. A previously developed B-spline active rays segmentation method was also considered for comparison purposes. Results: Interobserver and intraobserver segmentation agreements (median and [25%, 75%] quartile range) were substantial with respect to the distance metrics HDIST{sub cluster} (2.3 [1.8, 2.9] and 2.5 [2.1, 3.2] pixels) and AMINDIST{sub cluster} (0.8 [0.6, 1.0] and 1.0 [0.8, 1.2] pixels), while moderate with respect to AOM{sub cluster} (0.64 [0.55, 0.71] and 0.59 [0.52, 0.66]). The proposed segmentation method outperformed (0.80 ± 0.04) statistically significantly (Mann-Whitney U-test, p < 0.05) the B-spline active rays segmentation method (0.69 ± 0.04), suggesting the significance of the proposed semiautomated method. Conclusions: Results indicate a reliable semiautomated segmentation method for MC clusters offered by deformable models, which could be utilized in MC cluster quantitative image analysis.

60 APPLIED LIFE SCIENCES↗

Improved Ozone Analyses Using Direct Assimilation of 9.6μm Radiances from Hyperspectral Sounders

Previously, hyperspectral sounder brightness temperatures assimilated in the Goddard Earth Observing System Atmospheric Data Assimilation System (GEOS-ADAS) were limited to assimilating temperature and moisture. The ozone sensitive 9.6 m region is sensed by several hyperspectral sounders including AIRS (Atmospheric InfraRed Sounder), IASI (Infrared Atmospheric Sounding Interferometer), and CrIS (Cross-track Infrared Sounder). Direct assimilation of brightness temperatures in the 9.6 m region have been operational at ECMWF for several years (Dragani and McNally, 2013; Eresmaa et al., 2017). With this study, similar improvements using the GEOS-ADAS are presented. Channels were selected from available operational subsets evaluating information content and minimizing inter-channel correlation. Additionally, information such as channel selections made by other studies, and vertical sensitivities of ozone and temperature were considered. The analyses produced show improvements verified against ozonesondes taken from SHADOZ (Southern Hemisphere Additional Ozonesondes), and WOUDC (World Ozone and Ultraviolet Data Center). While care was taken to minimize inter-channel correlation through channel selection, a key feature available in the GEOS-ADAS is the ability to account for correlated error. The importance of inter-channel correlated error is highlighted by performing assimilation experiments with and without inter-channel correlation in the GEOS-ADAS. It is anticipated that inclusion of these ozone sensitive channels will be used to improve NASA GMAO products in the near future.

Karpowicz, Bryan M.↗

Selective enhancement of Selényi rings induced by the cross-correlation between the interfaces of a two-dimensional randomly rough dielectric film

By the use of both perturbative and non-perturbative solutions of the reduced Rayleigh equation, we present a detailed study of the scattering of light from two-dimensional weakly rough dielectric films. It is shown that for several rough film configurations, Selényi interference rings exist in the diffusely scattered light. For film systems supported by dielectric substrates where only one of the two interfaces of the film is weakly rough and the other planar, Selényi interference rings are observed at angular positions that can be determined from simple phase arguments. For such single-rough-interface films, we find and explain by a single scattering model that the contrast in the interference patterns is better when the top interface of the film (the interface facing the incident light) is rough than when the bottom interface is rough. When both film interfaces are rough, Selényi interference rings exist but a potential cross-correlation of the two rough interfaces of the film can be used to selectively enhance some of the interference rings while others are attenuated and might even disappear. This feature may in principle be used in determining the correlation properties of interfaces of films that otherwise would be difficult to access.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Dark Energy Survey Year 1 Results: Tomographic cross-correlations between Dark Energy Survey galaxies and CMB lensing from South Pole Telescope +Planck

We measure the cross-correlation between redMaGiC galaxies selected from the Dark Energy Survey (DES) year 1 data and gravitational lensing of the cosmic microwave background (CMB) reconstructed from South Pole Telescope (SPT) and Planck data over 1289 deg2 . When combining measurements across multiple galaxy redshift bins spanning the redshift range of 0.15 <z <0.90 , we reject the hypothesis of no correlation at 19.9 σ significance. When removing small-scale data points where thermal Sunyaev-Zel'dovich signal and nonlinear galaxy bias could potentially bias our results, the detection significance is reduced to 9.9 σ . We perform a joint analysis of galaxy-CMB lensing cross-correlations and galaxy clustering to constrain cosmology, finding Ωm=0.27 6-0.030+0.029 and S8=σ8√{Ωm/0.3 }=0.80 0-0.094+0.090 . We also perform two alternate analyses aimed at constraining only the growth rate of cosmic structure as a function of redshift, finding consistency with predictions from the concordance Λ CDM model. The measurements presented here are part of a joint cosmological analysis that combines galaxy clustering, galaxy lensing and CMB lensing using data from DES, SPT and Planck.

Omori, Y.↗

Event-Shape Engineering for the D-meson elliptic flow in mid-central Pb-Pb collisions at $\sqrt{s_{\mathrm{NN}}}=5.02$ TeV

The production yield of prompt D mesons and their elliptic flow coefficient $\nu$ 2 were measured with the Event-Shape Engineering (ESE) technique applied to mid-central (10–30% and 30–50% centrality classes) Pb-Pb collisions at the centre-of-mass energy per nucleon pair $\sqrt{s_{\mathrm{NN}}}=5.02$ TeV, with the ALICE detector at the LHC. The ESE technique allows the classification of events, belonging to the same centrality, according to the azimuthal anisotropy of soft particle production in the collision. The reported measurements give the opportunity to investigate the dynamics of charm quarks in the Quark-Gluon Plasma and provide information on their participation in the collective expansion of the medium. D mesons were reconstructed via their hadronic decays at mid-rapidity, | η | < 0.8, in the transverse momentum interval 1 < p T < 24 GeV/ c . The $\nu$ 2 coefficient is found to be sensitive to the event-shape selection confirming a correlation between the D-meson azimuthal anisotropy and the collective expansion of the bulk matter, while the per-event D-meson yields do not show any significant modification within the current uncertainties.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Correlations far from equilibrium in charged strongly coupled fluids subjected to a strong magnetic field

Within a holographic model, we calculate the time evolution of 2-point and 1-point correlation functions (of selected operators) within a charged strongly coupled system of many particles. That system is thermalizing from an anisotropic initial charged state far from equilibrium towards equilibrium while subjected to a constant external magnetic field. One main result is that thermalization times for 2-point functions are significantly (approximately three times) larger than those of 1-point functions. Magnetic field and charge amplify this difference, generally increasing thermalization times. However, there is also a competition of scales between charge density, magnetic field, and initial anisotropy, which leads to an array of qualitative changes on the 2- and 1-point functions. There appears to be a strong effect of the medium on 2-point functions at early times, but approximately none at later times. At strong magnetic fields, an apparently universal thermalization time emerges, at which all 2-point functions appear to thermalize regardless of any other scale in the system. Hence, this time scale is referred to as saturation time scale. As extremality is approached in the purely charged case, 2- and 1-point functions appear to equilibrate at infinitely late time. We also compute 2-point functions of charged operators. Our results can be taken to model thermalization in heavy ion collisions, or thermalization in selected condensed matter systems.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Machine learning elastic constants of multi-component alloys

The present manuscript explores application of machine learning methods for determining elastic constants and other derived mechanical properties of multi-component alloys. Here, a number of machine learning models, including linear regression, neural network and random forest based models, are trained and tested on a dataset of binary alloys generated using density functional theory (DFT) calculations and spanning over a large number of elemental species in the periodic table. Starting with a wide range of simple and easily accessible compositionally-averaged elemental features, a correlation-based feature selection strategy was used to systematically down-select a set of most relevant features towards the prediction of the elasticity tensor components. The true predictive performance and the associated uncertainties of the models were established by testing on unseen data and bootstrapping, respectively. A single and pair-wise feature partial dependence analysis was performed to visualize the average property trends in the multi-dimensional feature space in order to further understand the achieved predictive performance. The utility of the trained model is further demonstrated by obtaining sufficiently accurate yet highly efficient approximations for bulk modulus, Young’s modulus, shear modulus and Poisson’s ratio for alloys beyond the binary space (i.e., two-component alloys) on which the model was originally trained. More importantly, we test and validate the predictive performance of the developed model directly against the experimentally measured elastic constants of technologically relevant multi-component alloys (such as, Ni- and Ti-based alloys). Finally, utility of such a data-enabled route is demonstrated by predicting the possible range of various elastic properties for vast composition space available within the five component Ni-Cr-Fe-Mo-W alloy system in a high-throughput manner.

36 MATERIALS SCIENCE↗

Pore system characterization of organic-rich shales using nanoscale-resolution 3D imaging

The Vaca Muerta Shale in Argentina is the first signifcant commercial shale oil/gas play outside of North America. High-resolution 2D/3D imaging of shale rocks for the purpose of establishing their mineralogy, total, and connected porosities has become more and more sophisticated. In this paper, nanoscale-resolution focused ion beam (FIB)-scanning electron microscopy (SEM) nano-tomography was used to obtain images of pore structures within two organic-rich regions of interest (ROIs), selected based on correlative SEM and automated mineralogy maps. Advanced machine learning classification tools were used to segment the images and assign porosities and other components. Pore size distribution and pore connectivity analyzes revealed that about 95% of all the pores, present within the two ROIs, had a diameter of less than approximately 75 nm, and that most of these pores were poorly connected. In a similar fashion, the flow rate distribution analysis showed that pores with diameters of about 150-330 nm contributed to over 50% of the flow capacity of the connected pore systems. These results suggest that although most of the pores typically found in shales have pore diameter smaller than about 100 nm, most of the hydrocarbon production may be carried by a relatively small number of larger connected pores with pore diameter greater than about 150 nm. This research implies that a large portion of the organic-hosted pores (with diameter typically smaller than about 100 nm) may not provide permeable flow pathways for the oil and/or gas migration, and hence may have very little contribution to the hydrocarbon production.

58 GEOSCIENCES↗

Gas transport characteristics of supramolecular networks of metal-coordinated highly branched Poly(ethylene oxide)

Model systems are developed and investigated to better understand the effect of polyether-metal ion interactions on gas separation characteristics. These systems help answer current questions raised by the substantial body of research on metal-organic frameworks (MOFs) dispersed in polyethers to improve gas separation performance, where favorable interactions between the metal centers and polyethers are preferred to improve interfacial compatibility. Specifically, we investigate CO 2 /gas transport properties of supramolecular networks comprising cross-linked poly(ethylene oxide) (XLPEO) and dissociable salts, including LiClO 4 , Ni(BF 4 ) 2 , and Cu(BF 4 ) 2 . Increasing the salt content increases the glass transition temperature (T g ) and generally decreases gas diffusivity and permeability, which can be successfully described using a T g -integrated free volume model with an expression similar to the Vogel-Tammann-Fulcher (VTF) equation. Surprisingly, low loadings of LiClO 4 and Cu(BF 4 ) 2 (2 mass% or less) can increase gas permeability by 30%–70% without affecting the CO 2 /gas selectivity. This increase correlates with polyether-metal ion dynamics as measured by dielectric spectroscopy. Understanding how interaction-mediated dynamics affect gas transport will be instrumental to designing MOF-based mixed matrix materials for gas separations.

36 MATERIALS SCIENCE↗

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus

The Southern Ocean houses a diverse and productive community of organisms. Unicellular eukaryotic diatoms are the main primary producers in this environment, where photosynthesis is limited by low concentrations of dissolved iron and large seasonal fluctuations in light, temperature and the extent of sea ice. How diatoms have adapted to this extreme environment is largely unknown. Here we present insights into the genome evolution of a cold-Adapted diatom from the Southern Ocean, Fragilariopsis cylindrus, based on a comparison with temperate diatoms. We find that approximately 24.7 per cent of the diploid F. cylindrus genome consists of genetic loci with alleles that are highly divergent (15.1 megabases of the total genome size of 61.1 megabases). These divergent alleles were differentially expressed across environmental conditions, including darkness, low iron, freezing, elevated temperature and increased CO 2 . Alleles with the largest ratio of non-synonymous to synonymous nucleotide substitutions also show the most pronounced condition-dependent expression, suggesting a correlation between diversifying selection and allelic differentiation. Divergent alleles may be involved in adaptation to environmental fluctuations in the Southern Ocean.

59 BASIC BIOLOGICAL SCIENCES↗

A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming

Abstract Unraveling the drivers controlling community assembly is a central issue in ecology. Although it is generally accepted that selection, dispersal, diversification and drift are major community assembly processes, defining their relative importance is very challenging. Here, we present a framework to quantitatively infer community assembly mechanisms by phylogenetic bin-based null model analysis (iCAMP). iCAMP shows high accuracy (0.93–0.99), precision (0.80–0.94), sensitivity (0.82–0.94), and specificity (0.95–0.98) on simulated communities, which are 10–160% higher than those from the entire community-based approach. Application of iCAMP to grassland microbial communities in response to experimental warming reveals dominant roles of homogeneous selection (38%) and ‘drift’ (59%). Interestingly, warming decreases ‘drift’ over time, and enhances homogeneous selection which is primarily imposed on Bacillales. In addition, homogeneous selection has higher correlations with drought and plant productivity under warming than control. iCAMP provides an effective and robust tool to quantify microbial assembly processes, and should also be useful for plant and animal ecology.

59 BASIC BIOLOGICAL SCIENCES↗

High-efficiency oxygen reduction to hydrogen peroxide catalysed by oxidized carbon materials

Hydrogen peroxide (H 2 O 2 ) is a valuable chemical with a wide range of applications, but the current industrial synthesis of H 2 O 2 involves an energy-intensive anthraquinone process. The electrochemical synthesis of H 2 O 2 from oxygen reduction offers an alternative route for on-site applications; the efficiency of this process depends greatly on identifying cost-effective catalysts with high activity and selectivity. Here, we demonstrate a facile and general approach to catalyst development via the surface oxidation of abundant carbon materials to significantly enhance both the activity and selectivity (~90%) for H 2 O 2 production by electrochemical oxygen reduction. We find that both the activity and selectivity are positively correlated with the oxygen content of the catalysts. In conclusion, the density functional theory calculations demonstrate that the carbon atoms adjacent to several oxygen functional groups (–COOH and C–O–C) are the active sites for oxygen reduction reaction via the two-electron pathway, which are further supported by a series of control experiments.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Galaxy blending effects in deep imaging cosmic shear probes of cosmology

ABSTRACT Upcoming deep imaging surveys such as the Vera C. Rubin Observatory Legacy Survey of Space and Time will be confronted with challenges that come with increased depth. One of the leading systematic errors in deep surveys is the blending of objects due to higher surface density in the more crowded images; a considerable fraction of the galaxies which we hope to use for cosmology analyses will overlap each other on the observed sky. In order to investigate these challenges, we emulate blending in a mock catalogue consisting of galaxies at a depth equivalent to 1.3 yr of the full 10-yr Rubin Observatory that includes effects due to weak lensing, ground-based seeing, and the uncertainties due to extraction of catalogues from imaging data. The emulated catalogue indicates that approximately 12 per cent of the observed galaxies are ‘unrecognized’ blends that contain two or more objects but are detected as one. Using the positions and shears of half a billion distant galaxies, we compute shear–shear correlation functions after selecting tomographic samples in terms of both spectroscopic and photometric redshift bins. We examine the sensitivity of the cosmological parameter estimation to unrecognized blending employing both jackknife and analytical Gaussian covariance estimators. An ∼0.025 decrease in the derived structure growth parameter S8 = σ8(Ωm/0.3)0.5 is seen due to unrecognized blending in both tomographies with a slight additional bias for the photo-z-based tomography. This bias is greater than the 2σ statistical error in measuring S8.

79 ASTRONOMY AND ASTROPHYSICS↗

Limits on Stellar-Mass Compact Objects as Dark Matter from Gravitational Lensing of Type Ia Supernovae

We present that the nature of dark matter (DM) remains unknown despite very precise knowledge of its abundance in the Universe. An alternative to new elementary particles postulates DM as made of macroscopic compact halo objects (MACHO) such as black holes formed in the very early Universe. Stellar-mass primordial black holes (PBHs) are subject to less robust constraints than other mass ranges and might be connected to gravitational-wave signals detected by the Laser Interferometer Gravitational-Wave Observatory (LIGO). New methods are therefore necessary to constrain the viability of compact objects as a DM candidate. Here we report bounds on the abundance of compact objects from gravitational lensing of type Ia supernovae (SNe). Current SNe data sets constrain compact objects to represent less than 35.2% (Joint Lightcurve Analysis) and 37.2% (Union 2.1) of the total matter content in the Universe, at 95% confidence level. The results are valid for masses larger than ~ 0.01 M ⊙ (solar masses), limited by the size SNe relative to the lens Einstein radius. We demonstrate the mass range of the constraints by computing magnification probabilities for realistic SNe sizes and different values of the PBH mass. Our bounds are sensitive to the total abundance of compact objects with M ≳ 0.01 M ⊙ and complementary to other observational tests. These results are robust against cosmological parameters, outlier rejection, correlated noise, and selection bias. PBHs and other MACHOs are therefore ruled out as the dominant form of DM for objects associated to LIGO gravitational wave detections. Lastly, these bounds constrain early-Universe models that predict stellar-mass PBH production and strengthen the case for lighter forms of DM, including new elementary particles.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Mechanism for Clastogenic Activity of Naphthalene. Quarterly Technical Progress Report

The project has two main goals: 1) Identify the types of adducts naphthalene (NA) forms with DNA and 2) determine whether adduct formation correlates with site selective tumor formation in defined subcompartments of the respiratory tract (respiratory and olfactory nasal epithelium and airways of mice, rats and rhesus monkeys). Five tasks are associated with the completion of the goals. Task 1: Contracting and Animal Use Approvals. IACUC and ACURO approvals are complete. The subcontract with UC Davis (UCD) was executed in December 2014. Task 2: Perform In Vitro Study for Goal 1. Rat and mouse samples exposures completed. Monkey samples need to be exposed in next quarter. Task 3: Perform In Vitro Study for Goal 2. Mouse and rat ex vivo exposures completed. Monkey samples need to be completed in the next quarter. Task 4: Sample Preparation and Analysis. Mouse and Rat Goal 2 samples completed. Monkey samples remain to be done for Goal 2. Rat samples completed for Goal 1. Mouse and Monkey samples for Goal 1 need to be completed. Task 5: Data Interpretation and Reporting. Poster will be presented at 2016 Society of Toxicology Meeting. Outline for paper on adduct formation complete and similar to poster for SOT meeting.

59 BASIC BIOLOGICAL SCIENCES↗

Cubic spline function interpolation in atmosphere models for the software development laboratory: Formulation and data

A tabulation of selected altitude-correlated values of pressure, density, speed of sound, and coefficient of viscosity for each of six models of the atmosphere is presented in block data format. Interpolation for the desired atmospheric parameters is performed by using cubic spline functions. The recursive relations necessary to compute the cubic spline function coefficients are derived and implemented in subroutine form. Three companion subprograms, which form the preprocessor and processor, are also presented. These subprograms, together with the data element, compose the spline fit atmosphere package. Detailed FLOWGM flow charts and FORTRAN listings of the atmosphere package are presented in the appendix.

Kirkpatrick, J. C.↗

Numerical prediction of aeroacoustic jet-flap flows

Turbulent boundary layer flows departing an aerodynamic surface are experimentally verified to be strong sources of noise. Analysis of the source tensor of the Lighthill equation identifies important gradients of mean and fluctuating velocity components. Transition distributions of mean flow and select fluctuating velocity correlations, within the region immediately downstream of a sharp edged flap terminus are established by finite element solution of a parabolized form of the time-averaged steady flow Navier-Stokes equations closed with a turbulence kinetic energy model. Numerical solutions are presented which quantize the localized large mean flow accelerations and resultant peaks in the distribution of turbulence kinetic energy in the near wake region. Results are verified by comparison to experiment.

Baker, A. J.↗

Problems in correlation caused by propulsion systems

Correlation efforts and selected results for transonic drag are reviewed. A process to reduce the typical error sources to decrease the errors inherent in the transonic aircraft development process is summarized.

Smith, R. H.↗