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At least 145 records · Page 8

Experimental investigation of abnormal transverse flow enhancement of α particles in heavy-ion collisions

The mass dependence of the transverse flow for Z = 1–5 fragments from the collisions of 40 Ar + 27 Al, 40 Ar + 48 Ti, and 40 Ar + 58 Ni at 47 MeV/nucleon is investigated experimentally in this article. The transverse flow values are determined using the in-plane components of the fragment transverse momenta, where three conventional methods, i.e., the kinetic flow tensor method, the transverse momentum analysis method, and the azimuthal correlation method, are applied to reconstruct the reaction plane in an event-by-event basis. It is demonstrated from the comparison of the present experimental mass dependent flow measurements and the model simulations using an improved antisymmetrized molecular dynamics model that the experimentally observed abnormal α transverse flow enhancement is closely related to the reaction plane reconstruction procedure in the flow extraction. We further investigate the physical existence of the abnormal α flow behavior using a two-particle azimuthal correlation method, which allows us to provide the relative flow magnitude information with an identification of fragment charge number without the knowledge of the reaction plane differing from the three conventional methods. It is found that the relative flow magnitudes deduced from the two-particle azimuthal correlation functions with an identification of Z, with the correction for the recoil effect imposed by the momentum conservation, show a monotonically increasing trend as a function of fragment charge number, with no exception of the α flow enhancement. These results, in addition to those from the improved antisymmetrized molecular dynamics model simulations, definitely provide experimental evidences for the inexistence of the abnormal α flow behavior in the heavy-ion collisions at the present incident energy region in nature.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Tutorial for Non-Orthogonal Configuration Interaction Fragment Studies Using GronOR

A brief tutorial is presented for the GronOR non-orthogonal configuration interaction application illustrating the download and build process, setting up calculations with OpenMolcas and GronOR, and a description of the file structure and input options. An overview of the computational workflow includes the generation of fragment wave functions and integrals with an adapted version of OpenMolcas, running GronOR calculations, and accounting for dynamic correlation corrections. Three end-to-end use cases are provided, representing a molecular dimer, an ion pair, and overlapping molecular fragments.

Straatsma, T.P.↗

General, Rigorous Approach for the Treatment of Interfragment Covalent Bonds

Here, a generalized, projection-based transformation of the method-agnostic Fock operator in various ab initio fragment-based quantum chemistry methods has been developed for the treatment of interfragment covalent bonds. This transformation freezes the relevant localized molecular orbital associated with each interfragment bond, thereby restricting the variational subspace of the fragment wave functions, in order to maintain the proper physical characteristics of the involved covalent bonds. In addition, sets of orbitals that would lead to multiple occupancy of certain orbitals are explicitly removed from the variational space. The transformation is developed for the specific case of mutually orthonormal frozen and unfrozen orbitals within each fragment. The newly developed approach is then used to study model systems with two popular ab initio fragment-based methods, and the results of these calculations are compared to those obtained by existing methodologies. Analysis is focused on both quantitative and qualitative accuracy as well as computational scalability and stability. Other methods for which the developed formalisms are appropriate are outlined, and future extensions of the methods are discussed.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Transverse single-spin asymmetry of forward 𝜂 mesons in 𝑝 ↑ +𝑝 collisions at √𝑠 =200 GeV

Utilizing the 2012 transversely polarized proton data from the Relativistic Heavy Ion Collider at Brookhaven National Laboratory, the forward 𝜂-meson transverse single-spin asymmetry (𝐴 𝑁 ) was measured for 𝑝 ↑ +𝑝 collisions at √𝑠 =200 GeV as a function of Feynman-x (𝑥 𝐹 ) for 0.2 <|𝑥 𝐹 | <0.8 and transverse momentum (𝑝 𝑇 ) for 1.0 <𝑝 𝑇 <5.0 GeV/𝑐. Large asymmetries at positive 𝑥 𝐹 are observed (⟨𝐴 𝑁 ⟩=0.086±0.019), agreeing well with previous measurements of 𝜋 0 and 𝜂𝐴 𝑁 , but with reach to higher 𝑥 𝐹 and 𝑝 𝑇 . The contribution of initial-state spin-momentum correlations to the asymmetry, as calculated in the collinear twist-3 framework, appears insufficient to describe the data.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

On the role of dynamic electron correlation in non-orthogonal configuration interaction with fragments

Two different approaches have been implemented to include the effect of dynamic electron correlation in the Non-Orthogonal Configuration Interaction for Fragments (NOCI-F) method. The first is based on shifting the diagonal matrix elements of the NOCI matrix, while the second incorporates the dynamic correlation explicitly in the fragment wave functions used to construct the many-electron basis functions of the NOCI. The two approaches are illustrated for the calculation of the electronic coupling relevant in singlet fission and the coupling of spin moments in organic radicals. Comparison of the calculated diabatic couplings, the NOCI energies and wave functions shows that dynamic electron correlation is not only efficiently but also effectively incorporated by the shifting approach and can largely affect the coupling between electronic states. Additionally, it brings the NOCI coupling of the spin moments in close agreement with benchmark calculations.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Longitudinal spin transfer to Λ hyperons in semi-inclusive deep inelastic scattering with the CLAS12 spectrometer

The polarization of Λ hyperons is preserved in the angular distribution of their decay products. This property allows one to study the spin structure of the Λ. In semi-inclusive deep inelastic scattering where a high energy lepton interacts with a nucleon target and one or more hadrons and the scattered lepton are detected in the final state, the probability for a struck quark to impart the polarization of the lepton to the Λ may be measured. In particular, in electron-proton scattering this quantity may be related to the longitudinal light quark polarization of the Λ. Currently, limited experimental data cannot discriminate between different models of Λ spin structure. This work reports on the measurement of the longitudinal spin transfer 𝐷$^{Λ}_{𝐿⁢𝐿′}$ to the Λ using data taken by the CLAS12 spectrometer at Jefferson Lab with a 10.6 GeV longitudinally polarized electron beam and an unpolarized hydrogen target. This measurement is the most precise to date, and, in comparison with theory predictions, it offers valuable insight into the relative dominance of current and target fragmentation in Λ production.

deep inelastic scattering↗

Angular distribution, kinetic energy distributions, and excitation functions of fast metastable oxygen fragments following electron impact of CO2

Dissociative excitation of CO2 by electron impact was studied using the methods of translational spectroscopy and angular distribution analysis. Earlier time of flight studies revealed two overlapping spectra, the slower of which was attributed to metastable CO(a3 pi) fragments. The fast peak is the focus of this study. Threshold energy, angular distribution, and improve time of flight measurements indicate that the fast peak actually consists of five overlapping features. The slowest of the five features is found to consist of metastable 0(5S) produced by predissociation of a sigma u + state of CO2 into 0(5S) + CO(a3 pi). Oxygen Rydberg fragments originating directly from a different sigma u + state are believed to make up the next fastest feature. Mechanisms for producing the three remaining features are discussed.

Misakian, M.↗

Electron distribution function in a plasma generated by fission fragments

A Boltzmann equation formulation is presented for the determination of the electron distribution function in a plasma generated by fission fragments. The formulation takes into consideration ambipolar diffusion, elastic and inelastic collisions, recombination and ionization, and allows for the fact that the primary electrons are not monoenergetic. Calculations for He in a tube coated with fissionable material shows that, over a wide pressure and neutron flux range, the distribution function is non-Maxwellian, but the electrons are essentially thermal. Moreover, about a third of the energy of the primary electrons is transferred into the inelastic levels of He. This fraction of energy transfer is almost independent of pressure and neutron flux.

Hassan, H. A.↗

Impact cratering and spall failure at gabbro

Both hypervelocity impact and dynamic spall experiments were carried out on a series of well-indurated samples of gabbro. The impact experiments carried out with 0.04 to 0.2g, 5-6 km/sec projectiles produced deci-centimeter-sized craters and demonstrated crater efficiencies of 6/10 to the - 9 g/erg, and order of magnitude greater than in metal and some two to three times that of previous experiments on less strong igneous rocks. Most of the crater volume (some 60 to 80%) is due to spall failure. Distribution of cumulative fragment number, as a function of mass of fragments with masses greater than 0.1 gram yield values of b = d(log10N sub f)dlog10(m)of -0.5 to -0.6, where N sub f is the cumulate number of fragments and m is the mass of fragments. These values are in agreement or slightly higher than those obtained for less strong rocks and indicate that a large fraction of the ejectra resides in a few large fragments.

Lange, M. A.↗

Impact cratering and spall failure of gabbro

Both hypervelocity impact and dynamic spall experiments were carried out on a series of well-indurated samples of gabbro. The impact experiments carried out with 0.04 to 0.2 g, 5-6 km/sec projectiles produced deci-centimeter-sized craters and demonstrated crater efficiencies of 6/10 to the -9 g/erg, and order of magnitude greater than in metal and some two to three times that of previous experiments on less strong igneous rocks. Most of the crater volume (some 60 to 80 percent) is due to spall failure. Distribution of cumulative fragment number, as a function of mass of fragments with masses greater than 0.1 gram yield values of b = d(log10N sub f)dlog10(m) of -0.5 to -0.6, where N sub f is the cumulate number of fragments and m is the mass of fragments. These values are in agreement or slightly higher than those obtained for less strong rocks and indicate that a large fraction of the ejecta resides in a few large fragments.

Lange, M. A.↗

Skeletal phenotype of growing transgenic mice that express a function-perturbing form of beta1 integrin in osteoblasts

Skeletal modeling entails the deposition of large amounts of extracellular matrix (ECM) to form structures tailored to withstand increasing mechanical loads during rapid growth. Specific ECM molecules bind to integrin receptors on the cell surface, thereby triggering a cascade of signaling events that affect critical cell functions. To evaluate the role of integrins during skeletal growth, transgenic mice were engineered to express a function-perturbing fragment of beta1 integrin consisting of the transmembrane domain and cytoplasmic tail under the control of the osteocalcin promoter (TG mice). Thus, transgene expression was targeted to mature cells of the osteoblast lineage, and herein we show that cultured cells resembling osteocytes from 90-day-old TG mice display impaired adhesion to collagen I, a ligand for beta1 integrin. To determine the influence of beta1 integrin on bones that are responsible for providing structural support during periods of rapid growth, we examined the phenotype of the appendicular skeleton in TG mice compared to wild type (WT) mice. According to radiographs, bones from mice of both genotypes between 14 and 90 days of age appeared similar in gross structure and density, although proximal tibiae from 35-90 days old TG mice were less curved than those of WT mice (72-92% TG/WT). Although there were only mild and transient differences in absolute bone mass and strength, once normalized to body mass, the tibial dry mass (79.1% TG/WT females), ash mass (78.5% TG/WT females), and femoral strength in torsion (71.6% TG/WT females) were reduced in TG mice compared to WT mice at 90 days of age. Similar effects of genotype on bone mass and curvature were observed in 1-year-old retired breeders, indicating that these phenotypic differences between TG and WT mice were stable well into adulthood. Effects of genotype on histomorphometric indices of cancellous bone turnover were minimal and evident only transiently during growth, but when present they demonstrated differences in osteoblast rather than osteoclast parameters. Together, these results suggest that integrin signals generated during growth enhance the acquisition of a skeletal mass, structure, and strength to withstand the mechanical loads generated by weight-bearing.

Antigens, CD29/genetics/metabolism↗

Star formation and the initial mass function

Supersonic turbulence fragments the interstellar medium into dense sheets, filaments, cores and large low density voids, thanks to a complex network of highly radioactive shocks. The turbulence is driven on the large scale predominantly by super novae. While on large scale the magnetic energy is in approximate equipartition with the kinetic energy of the turbulence, on the scale of a few pc the turbulent kinetic energy exceeds the magnetic energy.

supersonic turbulence IMF initial mass function↗

SEGUID v2: Extending SEGUID checksums for circular, linear, single- and double-stranded biological sequences

Background Synthetic biology involves combining different DNA fragments, each containing functional biological parts, to address specific problems. Fundamental gene-function research often requires cloning and propagating DNA fragments, such as those from the iGEM Parts Registry or Addgene, typically distributed as circular plasmids. Addgene’s repository alone offers around 150,000 plasmids. To ensure data integrity, cryptographic checksums can be calculated for the sequences. Each sequence has a unique checksum, making checksums useful for validation and quick lookups of associated annotations. For example, the SEGUID checksum uniquely identifies protein sequences with a 27-character string. Objectives The original SEGUID, while effective for protein sequences and single-stranded DNA (ssDNA), is not suitable for circular DNA since there is no natural starting position nor for double-stranded DNA (dsDNA) since two separate sequences are present. Challenges include how to uniquely represent linear dsDNA, circular ssDNA, and circular dsDNA. To meet these needs, we propose SEGUID v2, which extends the original SEGUID to handle additional types of sequences. Conclusions SEGUID v2 produces orientation and rotation invariant checksums for single-stranded, double-stranded, possibly staggered, linear, and circular DNA and RNA sequences. Customizable alphabets allow for other types of sequences. In contrast to the original SEGUID, which uses Base64, SEGUID v2 uses Base64url to encode the SHA-1 hash. This ensures SEGUID v2 checksums can be used as-is in filenames, regardless of platform, and in URLs, with minimal friction. Availability SEGUID v2 is readily available for major programming languages, distributed under the MIT license. JavaScript package seguid is available on npm, Python package seguid on PyPi, R package seguid on CRAN, and a Tcl script on GitHub. These tools, along with documentation, examples, and an online SEGUID Calculator , can be found at https://www.seguid.org .

Pereira, Humberto↗

Ray trajectories in a torus: An application of MACSYMA to a complex numerical computation

The study of ray trajectories of plasma waves in a torodial geometry using MACSYMA is an example of how symbolic, numerical, and graphical facilities can be used in concert to accomplish a complex computational goal. Computational features of this study which are of particular significance include: the derivation of code (i.e. writing functions to generate program fragments), the use of array functions to simplify the specification of a numerical iteration scheme, and the graphical presentation of the results. Mathematically, this study originates in the solution of a linear inhomogeneous partial differential equation in 3 dimensions by the method of characteristics. While it is possible to describe this equation compactly by using vector notation, and by specifying the spatial variation of the coefficients in terms of intermediate parameters, the transformation of the equation into a form amenable to solution is very tedious. A MACSYMA program is presented for obtaining description of the rf field structure excited by a waveguide located at the edge of a toroidal plasma confinement device.

Kulp, J. L.↗

Soft fragmentation on the celestial sphere

We develop two approaches to the problem of soft fragmentation of hadrons in a gauge theory for high energy processes. The first approach directly adapts the standard resummation of the parton distribution function’s anomalous dimension (that of twist-two local operators) in the forward scattering regime, using k T -factorization and BFKL theory, to the case of the fragmentation function by exploiting the mapping between the dynamics of eikonal lines on transverse-plane to the celestial-sphere. Critically, to correctly resum the anomalous dimension of the fragmentation function under this mapping, one must pay careful attention to the role of regularization, despite the manifest collinear or infra- red finiteness of the BFKL equation. The anomalous dependence on energy in the celestial case, arising due to the mismatch of dimensionality between positions and angles, drives the differences between the space-like and time-like anomalous dimension of parton densities, even in a conformal theory. The second approach adapts an angular-ordered evolution equation, but working in 4 – 2ϵ dimensions at all angles. The two approaches are united by demanding that the anomalous dimension in 4 – 2ϵ dimensions for the parton distribution function determines the kernel for the angular-ordered evolution to all orders.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Excitation energy of fission fragments within nuclear time-dependent density functional theory

The number and properties of the neutrons and photons emitted in nuclear fission are directly related to the excitation energy of the fission fragments when they are formed at scission. Though not observable experimentally because of the extremely short timescales, the excitation energy of fission fragments can be predicted by microscopic theory based on time-dependent density functional theory (TDDFT). Initial results on the value of the total kinetic energy of fission reactions were very promising, but could not probe all possible fragmentations. Here, in this work, we perform large-scale TDDFT calculations in 240 Pu enabled by the development of a new TDDFT solver. We obtain TDDFT trajectories covering nearly all possible fragmentations. We find that the total kinetic energy is close to experimental values only for the most likely fission while it is severely underestimated at both small and large asymmetries. This conclusion seems rather independent of the parametrization of the energy functional, both in its particle-hole and particle-particle channels.

Physics - Nuclear physics and radiation physics↗

Dissociation of gas-phase anisole induced by low-energy electron interactions: understanding patterns of aromatic bond cleavage

Abstract In view of elucidating the fragmentation patterns of aromatic systems induced by low-energy electron interactions, dissociative electron attachment (DEA) to gas-phase anisole was performed. Anionic fragments resulting from this DEA process were detected by a quadrupole mass spectrometer, and ion yields of those fragments as a function of incident electron energy were rendered. Our study showed the formation of CH 3 − , HCC − , and OCH 3 − fragments, suggesting that various dissociation channels proceed out of DEA to anisole. We employed density functional theory to compute thermodynamic threshold energies for each potential dissociation channel. Those theoretical calculations supported the prediction that the CH 3 − and OCH 3 − fragments form via mechanisms of single-bond cleavage; the HCC − fragments may form through two-, three-, or four-body dissociation channels that entail hydrogen transfers and the cleavage of multiple aromatic bonds. The experimental resonance energies that form the CH 3 − , HCC − , and OCH 3 − fragments were 6.0 eV, 5.8 and 9.7 eV, and 9.8 eV, respectively. Given the classification of anisole as a monosubstituted aromatic species, our results explain generalizable patterns of electron-mediated dissociation in aromatic systems.

Finley, Jacob (ORCID:0009000606963352)↗