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The overlooked interaction of emerging contaminants and microbial communities: a threat to ecosystems and public health

Abstract Context and aims Emerging contaminants (ECs) and microbial communities should not be viewed in isolation, but through the One Health perspective. Both ECs and microorganisms lie at the core of this interconnected framework, as they directly influence the health of humans, animals, and the environment. The interactions between ECs and microbial communities can have profound implications for public health, affecting all three domains. However, these ECs-microorganism interactions remain underexplored, potentially leaving significant public health and ecological risks unrecognized. Therefore, this article seeks to alert the scientific community to the overlooked interactions between ECs and microbial communities, emphasizing the pivotal role these interactions may play in the management of ‘One Health.’ Results The most extensively studied interaction between ECs and microbial communities is biodegradation. However, other more complex and concerning interactions demand attention, such as the impact of ECs on microbial ecology (disruptions in ecosystem balance affecting nutrient and energy cycles) and the rise and spread of antimicrobial resistance (a growing global health crisis). Although these ECs-microbial interactions had not been extensively studied, there are scientific evidence that ECs impact on microbial communities may be concerning for public health and ecosystem balance. Conclusions So, this perspective summarizes the impact of ECs through a One Health lens and underscores the urgent need to understand their influence on microbial communities, while highlighting the key challenges researchers must overcome. Tackling these challenges is vital to mitigate potential long-term consequences for both ecosystems and public health.

Gomes, Inês B. (ORCID:0000000207313662)

Dark-Matter–Electron Detectors for Dark-Matter–Nucleon Interactions

In a seminal paper now a decade old, it was shown that dark-matter detectors geared at probing interactions with nucleons could also be used to probe dark-matter interactions with electrons. In this Letter, we show that new detector concepts designed to probe dark-matter-electron interactions at low masses can similarly be used to probe new parameter space for dark-matter-nucleon interactions. We demonstrate the power of this approach by using existing data from superconducting detectors to place new limits on the interactions of nuclei with MeV-scale dark matter. Further, we show that advances in detector technology that have been anticipated for electronic interactions will automatically extend sensitivity deep into uncharted territory for nuclear interactions. This doubles the effective science output of future low-threshold experiments.

Griffin, Sinéad M

Toward shell model interactions with credible uncertainties

Background: The nuclear shell model is a powerful framework for predicting nuclear structure observables, but relies on interaction matrix elements fit to experimental data as its inputs. Extending the shell model's applicability, particularly toward dripline nuclei, requires efficient fitting methods and credible uncertainty quantification. Traditional approaches face computational challenges and may underestimate uncertainties. Purpose: We develop and test a framework combining eigenvector continuation and Markov chain Monte Carlo to efficiently fit shell model interaction matrix elements and quantify their uncertainties. Methods: Eigenvector continuation is used to emulate shell model calculations, reducing computational costs. The emulator enables Markov chain Monte Carlo sampling to optimize interaction matrix elements and rigorously assess parametric uncertainties. Here, the framework is benchmarked using the USDB interaction in the 𝑠⁢𝑑 shell. Results: The emulator reproduces the USDB interaction with negligible error, validating its use in shell model fitting applications. However, we find that to obtain credible predictive intervals, the model defect of the shell model itself, rather than experimental or emulator error, must be taken into account in order to obtain credible uncertainties. Conclusions: The proposed framework provides an efficient and rigorous approach for fitting shell model interactions and quantifying uncertainties. Further, the normality assumption used in the past appears sufficient to describe the distribution of interaction matrix elements. However, it is crucial to account for model correlations to avoid underestimating uncertainties.

Nuclear forces

Structured interactions drive abrupt transitions in the spatial organization of microbial communities

Bacteria possess diverse mechanisms to regulate their motility in response to environmental and physiological signals, enabling them to navigate complex habitats and adapt their behavior. Some of these mechanisms are species specific and enable cells to modulate their movement based on the ecological identity of neighboring species. Here, we introduce a model in which bacteria interact via local signals that either enhance or suppress the motility of neighboring cells depending on species type. Through large-scale simulations and a coarse-grained stochastic model, we demonstrate the emergence of a sharp transition driven by nucleation processes: increasing the density of motility-suppressing interactions drives the system from a fully mixed, motile phase to a state characterized by large, stationary bacterial clusters. Remarkably, in systems with a large number of interacting species, this transition can be triggered solely by altering the structure of the motility-regulation interaction matrix while maintaining species and interaction densities constant. In particular, we find that heterogeneous and modular interactions promote the transition more readily than homogeneous random ones. These findings add a dimension to the theory of motility-induced phase separation and contribute to the ongoing effort to understand microbial interactions, suggesting that structured, nonrandom ones may be key to reproducing commonly observed spatial patterns in microbial communities.

bacterial communities

Realization of three- and four-body interactions between momentum states in a cavity

Spin Hamiltonians in condensed matter and quantum sensing typically utilize pairwise or two-body interactions between constituents in the material or ensemble. However, there is growing interest in exploring more general n-body interactions for n > 2. In this study, we realized an effective n = 3-body Hamiltonian interaction using an ensemble of laser-cooled atoms in a high-finesse optical cavity with the pseudospin 1/2 encoded by two atomic momentum states. We applied two dressing tones that induce the atoms to exchange photons via the cavity to realize a virtual six-photon process; lower-order interactions destructively interfered. We also observed signatures of a n = 4-body interaction mediated by a virtual eight-photon process. Our approach may be extensible to three-body interactions in multilevel systems or to even higher-order interactions.

Luo, Chengyi [University of Colorado, Boulder, CO

Competition and cooperation: The plasticity of bacterial interactions across environments

Bacteria live in diverse communities, forming complex networks of interacting species. A central question in bacterial ecology is whether species engage in cooperative or competitive interactions. But this question often neglects the role of the environment. Here, we use genome-scale metabolic networks from two different open-access collections (AGORA and CarveMe) to assess pairwise interactions of different microbes in varying environmental conditions (provision of different environmental compounds). By computationally simulating thousands of environments for 10,000 pairs of bacteria from each collection, we found that most pairs were able to both compete and cooperate depending on the availability of environmental resources. This modeling approach allowed us to determine commonalities between environments that could facilitate the potential for cooperation or competition between a pair of species. Namely, cooperative interactions, especially obligate, were most common in less diverse environments. Further, as compounds were removed from the environment, we found interactions tended to degrade towards obligacy. However, we also found that on average at least one compound could be removed from an environment to switch the interaction from competition to facultative cooperation or vice versa. Together our approach indicates a high degree of plasticity in microbial interactions in response to the availability of environmental resources.

Biochemistry & Molecular Biology

Flowfield analysis for successive oblique shock wave-turbulent boundary layer interactions

A computation procedure is described for predicting the flowfields which develop when successive interactions between oblique shock waves and a turbulent boundary layer occur. Such interactions may occur, for example, in engine inlets for supersonic aircraft. Computations are carried out for axisymmetric internal flows at M 3.82 and 2.82. The effect of boundary layer bleed is considered for the M 2.82 flow. A control volume analysis is used to predict changes in the flow field across the interactions. Two bleed flow models have been considered. A turbulent boundary layer program is used to compute changes in the boundary layer between the interactions. The results given are for flows with two shock wave interactions and for bleed at the second interaction site. In principle the method described may be extended to account for additional interactions. The predicted results are compared with measured results and are shown to be in good agreement when the bleed flow rate is low (on the order of 3% of the boundary layer mass flow), or when there is no bleed. As the bleed flow rate is increased, differences between the predicted and measured results become larger. Shortcomings of the bleed flow models at higher bleed flow rates are discussed.

Sun, C. C.

An approximate calculation of the strong interaction on a transonic airfoil

This paper describes an interactive computational scheme that calculates the transonic flow field over an airfoil. The inviscid flow, the turbulent boundary layer in the weak interaction region, and the elliptic flow in the strong interaction region are computed separately, and the solutions are matched iteratively in a direct, second-order interaction scheme. The pressure distribution, obtained from a transonic, small-perturbation solution, is prescribed on the boundary layer and the Navier-Stokes equations and the ensuing displacement thicknesses are used to modify the inviscid flow. The best overall results are obtained by using a turbulence model that eliminates the eddy viscosity in the strong interaction region. Computed pressure distributions are compared with experimental data and with Navier-Stokes solutions. In weak interactions, the agreement with experimental data is very good, as it is also in strong interactions except for the pressures in the separated-flow region. There the agreement is qualitative only, and the pressure recovery is too high. The results in both cases are superior or equal to those of the Navier-Stokes solutions, and the present method is significantly faster.

Seginer, A.

Side-band mutual interactions in the magnetosphere

Sideband mutual interactions between VLF waves in the magnetosphere are investigated. Results of an experimental program involving the generation of sidebands by means of frequency shift keying are presented which indicate that the energetic electrons in the magnetosphere can interact only with sidebands generated by signals with short modulation periods. Using the value of the memory time during which electrons interact with the waves implied by the above result, it is estimated that the length of the electron interaction region in the magnetosphere is between 4000 and 2000 km. Sideband interactions are found to be similar to those between constant-frequency signals, exhibiting suppression and energy coupling. Results from a second sideband transmitting program show that for most cases the coherence bandwidth of sidebands is about 50 Hz. Sideband mutual interactions are then explained by the overlap of the ranges of the parallel velocity of the electrons which the sidebands organize, and the wave intensity in the interaction region is estimated to be 2.5-10 milli-gamma, in agreement with satellite measurements.

Chang, D. C. D.

ESCHER: An interactive mesh-generating editor for preparing finite-element input

ESCHER is an interactive mesh generation and editing program designed to help the user create a finite-element mesh, create additional input for finite-element analysis, including initial conditions, boundary conditions, and slidelines, and generate a NEUTRAL FILE that can be postprocessed for input into several finite-element codes, including ADINA, ADINAT, DYNA, NIKE, TSAAS, and ABUQUS. Two important ESCHER capabilities, interactive geometry creation and mesh archival storge are described in detail. Also described is the interactive command language and the use of interactive graphics. The archival storage and restart file is a modular, entity-based mesh data file. Modules of this file correspond to separate editing modes in the mesh editor, with data definition syntax preserved between the interactive commands and the archival storage file. Because ESCHER was expected to be highly interactive, extensive user documentation was provided in the form of an interactive HELP package.

Oakes, W. R., Jr.

Helicopter tail rotor blade-vortex interaction noise

A study is made of helicopter tail rotor noise, particularly that due to the interactions with main rotor tip vortices. Summarized here are present analysis, the computer codes, and the results of several test cases. Amiet's unsteady thin airfoil theory is used to calculate the acoustics of blade-vortex interaction. The noise source is modelled as a force dipole resulting from an airfoil of infinite span chopping through a skewed line vortex. To analyze the interactions between helicopter tail rotor and main rotor tip vortices, we developed a two-step approach: (1) the main rotor tip vortex system is obtained through a free wake geometry calculation of the main rotor using CAMRAD code; (2) acoustic analysis takes the results from the aerodynamic interaction analysis and calculates the farfield pressure signatures for the interactions. It is found that under a wide range of helicopter flight conditions, acoustic pressure fluctuations of significant magnitude can be generated by tail rotors due to a series of interactions with main rotor tip vortices. This noise mechanism depends strongly on the helicopter flight conditions and the relative location and phasing of the main and tail rotors. fluctuations of significant magnitude can be generated by tail rotors due to a series of interactions with main rotor tip vortices. This noise mechanism depends strongly upon the helicopter flight conditions and the relative location and phasing of the main and tail rotors.

George, Albert R.

Numerical simulations of interacting disk galaxies

Galaxy-galaxy interactions have long attracted many extragalactic astronomers in various aspects. A number of computer simulations performed in the 1970s have successfully reproduced the peculiar morphologies observed in interacting disk galaxies and clarified that tidal deformation explains most of the observed global peculiarities. However, most of these simulations have used test particles in modelling the disk component. Tidal response of a self-gravitating disk remains to be further clarified. Another topic which is intensely discussed at present is the relation between galaxy-galaxy interactions and activity. Many observations suggest that interactions trigger strong starbursts and possibly active galactic nuclei (AGN). However, the detailed mechanism of triggering is not yet clear. It is vital here to understand the dynamics of interstellar gas. In order to understand various phenomena related to galaxy-galaxy interactions (mainly for disk galaxies), the author performed a series of numerical simulations on close galaxy encounters which includes both interstellar gas and self-gravitating disk components. In these simulations, the galaxy model to be perturbed (target galaxy) consists of a halo and a disk. The halo was treated as a rigid spherical gravitational field which is assumed to remain fixed during the interaction. The disk is composed of stars and gas. The stellar disk was constructed by 20000 collisionless particles of the same mass. Those particles move in the halo gravitational field, interacting with each other and with the perturber. Therefore, the self-graviy of the disk is properly taken into account. Stellar particles were initially given circular velocities with small random motions required to stabilize the disk against local axisymmetric disturbances. The gravitational field of the stellar disk was calculated by the particle-mesh scheme (e.g. Hockney and Eastwood 1981). The gaseous component was modelled by the cloud-particle scheme (e.g. Roberts and Hausman 1984). Here, the authors represent the gas as an ensemble of small spheres (i.e. clouds) and include the creation of an OB star in a cloud-cloud collision and subsequent velocity push on nearby clouds due to a supernova explosion.

Noguchi, Masafumi

Leo space plasma interactions

Photovoltaic arrays interact with the low earth orbit (LEO) space plasma in two fundamentally different ways. One way is the steady collection of current from the plasma onto exposed conductors and semiconductors. The relative currents collected by different parts of the array will then determine the floating potential of the spacecraft. In addition, these steady state collected currents may lead to sputtering or heating of the array by the ions or electrons collected, respectively. The second kind of interaction is the short time scale arc into the space plasma, which may deplete the array and/or spacecraft of stored charge, damage solar cells, and produce EMI. Such arcs only occur at high negative potentials relative to the space plasma potential, and depend on the steady state ion currents being collected. New high voltage solar arrays being incorporated into advanced spacecraft and space platforms may be endangered by these plasma interactions. Recent advances in laboratory testing and current collection modeling promise the capability of controlling, and perhaps even using, these space plasma interactions to enable design of reliable high voltage space power systems. Some of the new results may have an impact on solar cell spacing and/or coverslide design. Planned space flight experiments are necessary to confirm the models of high voltage solar array plasma interactions. Finally, computerized, integrated plasma interactions design tools are being constructed to place plasma interactions models into the hands of the spacecraft designer.

Ferguson, Dale C.

Two- and three-dimensional blade vortex interactions

A three-dimensional time dependent Navier-Stokes analysis was applied to the rotor blade vortex interaction (BVI) problem. The numerical procedure is an iterative implicit procedure using three point central differences to represent spatial derivatives. A series of calculations were made to determine the time steps, pseudo-time steps, iterations, artificial dissipation level, etc. required to maintain a nondissipative vortex. Results show the chosen method to have excellent non-dissipative properties provided the correct parameters are chosen. This study was used to set parameters for both two- and three-dimensional blade vortex interaction studies. The two-dimensional study considered the interaction between a vortex and a NACA0012 airfoil. The results showed the detailed physics during the interaction including the pressure pulse propagating from the blade. The simulated flow physics was qualitatively similar to that experimentally observed. The 2-D BVI phenomena is the result of the buildup and violent collapse of the shock waves and local supersonic pockets on the blade surfaces. The resulting pressure pulse build-up appears to be centered at the blade leading edge. The three-dimensional interaction study considered the case of a vortex at 20 deg incidence to the blade leading edge. Although the qualitative results were similar to that of the two-dimensional interaction, details clearly showed the three-dimensional nature of the interaction process.

Davoudzadeh, F.

Supersonic shock wave/vortex interaction

Although shock wave/vortex interaction is a basic and important fluid dynamics problem, very little research has been conducted on this topic. Therefore, a detailed experimental study of the interaction between a supersonic streamwise turbulent vortex and a shock wave was carried out at the Penn State Gas Dynamics Laboratory. A vortex is produced by replaceable swirl vanes located upstream of the throat of various converging-diverging nozzles. The supersonic vortex is then injected into either a coflowing supersonic stream or ambient air. The structure of the isolated vortex is investigated in a supersonic wind tunnel using miniature, fast-response, five-hole and total temperature probes and in a free jet using laser Doppler velocimetry. The cases tested have unit Reynolds numbers in excess of 25 million per meter, axial Mach numbers ranging from 2.5 to 4.0, and peak tangential Mach numbers from 0 (i.e., a pure jet) to about 0.7. The results show that the typical supersonic wake-like vortex consists of a non-isentropic, rotational core, where the reduced circulation distribution is self similar, and an outer isentropic, irrotational region. The vortex core is also a region of significant turbulent fluctuations. Radial profiles of turbulent kinetic energy and axial-tangential Reynolds stress are presented. The interactions between the vortex and both oblique and normal shock waves are investigated using nonintrusive optical diagnostics (i.e. schlieren, planar laser scattering, and laser Doppler velocimetry). Of the various types, two Mach 2.5 overexpanded-nozzle Mach disc interactions are examined in detail. Below a certain vortex strength, a 'weak' interaction exists in which the normal shock is perturbed locally into an unsteady 'bubble' shock near the vortex axis, but vortex breakdown (i.e., a stagnation point) does not occur. For stronger vortices, a random unsteady 'strong' interaction results that causes vortex breakdown. The vortex core reforms downstream of the rear stagnation point, and the reduced circulation distribution once again becomes self-similar in this region. A-new model of this interaction is proposed. Finally, a curve defining the approximate limits of supersonic vortex breakdown is presented.

Settles, G. S.

Interactions between spacecraft and their environments

Spacecraft inevitably interact with their environments. Besides the interactions one immediately thinks of in space (zero-g, solar heating, atmospheric drag, expansion into vacuum conditions, etc.) other interactions are also important. Those of interest to spacecraft designers so far may be grouped under several headings; plasma interactions and spacecraft charging, impact of debris and micrometeoroids, chemical reactions with neutral species, radiation degradation, etc. Researchers have made great progress in defining and evaluating the interactions of spacecraft with their expected ambient environments near Earth and in interplanetary space. Some of these interactions are discussed with an eye toward expanding our knowledge into new environments, such as may be found at the moon and Mars, that will interact in new and different ways with exploring spacecraft and spacefarers.

Ferguson, Dale C.

Vortex distortion during vortex-surface interaction in a Mach 3 stream

An experimental study has been conducted in Mach 3 wind tunnel to investigate the behavior of supersonic vortices as they interact with a wedge surface placed in their passage. The experimental setup was arranged so that interactions resulted in a close encounter of the vortex core and the wedge leading edge. Spark shadow photographs of the flowfield along the pressure measurements on the wedge surface were used to study the interaction problem. In their most organized form, distortion of streamwise vortices upon interacting with the wedge was found to result in formation of symmetric detached shock fronts far upstream of the wedge leading edge followed by an apparent slip surface separating a subsonic region from a supersonic zone. Interaction experiments leading to substantial changes in the structure of vortices revealed that the supersonic vortex distortion has strong resemblances to the incompressible 'B-breakdown' reported in the literature. Experimental results also indicate that the interaction strongly depends on the vortex strength and vortex proximity to the wedge leading edge, and the generated flowfield was found to be highly unsteady. Interaction of concentrated streamwise vortices with the oblique shock formed over the wedge surface resulted in formation of a locally three-dimensional shock wave with a limited subsonic region downstream of the shock.

Kalkhoran, Iraj M.

Full-Potential Modeling of Blade-Vortex Interactions

A study of the full-potential modeling of a blade-vortex interaction was made. A primary goal of this study was to investigate the effectiveness of the various methods of modeling the vortex. The model problem restricts the interaction to that of an infinite wing with an infinite line vortex moving parallel to its leading edge. This problem provides a convenient testing ground for the various methods of modeling the vortex while retaining the essential physics of the full three-dimensional interaction. A full-potential algorithm specifically tailored to solve the blade-vortex interaction (BVI) was developed to solve this problem. The basic algorithm was modified to include the effect of a vortex passing near the airfoil. Four different methods of modeling the vortex were used: (1) the angle-of-attack method, (2) the lifting-surface method, (3) the branch-cut method, and (4) the split-potential method. A side-by-side comparison of the four models was conducted. These comparisons included comparing generated velocity fields, a subcritical interaction, and a critical interaction. The subcritical and critical interactions are compared with experimentally generated results. The split-potential model was used to make a survey of some of the more critical parameters which affect the BVI.

Jones, Henry E.