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At least 145 records · Page 8

Nodeman: A Node Management Tool For Hpc Clusters

NodeMan is a command line tool to manage nodes in an HPC cluster. At it's core, it is an extensible framework composed of bash scripting and GNU parallel. HPC System Administrator will find it useful in that it encapsulates desired functions and allows them to be assembled in a way familiar to administrators - through pipes. In fact, NodeMan functions can work with common command line tools as long as they use stdin/stdout. System Administrators can construct moderately complex logic and filtering on a compact command line that would normally require a substantial shell script. In the spirit of clush and pdsh, it is able to run commands remotely on nodes. Additionally, NodeMan is more flexible. For example, it can interact with IPMI and naturally processes node lists for orchestrating different tools. The library of useful pre-built functions is growing. System administrators can easily create new functions and make it their own.

Serr, ScottM↗

An intra-node HPC network architecture with nanosecond-scale photonic switches

We propose a single-stage network architecture for intra-node connectivity that makes use of nanosecond-scale photonic switches. Although buffering at the switch points is of vital importance for complex multi-stage networks, this is not the case for smaller-scale single-stage networks where the end nodes are located only one hop apart. By limiting the buffering to the end points, the proposed architecture manages to minimize the required electro-optic and opto-electronic conversions, leading in this way to both low end-to-end latency and better energy efficiency. Combining these advantages with nanosecond-scale switching times can allow for high-throughput operation even for frequent switch reconfigurations. The performance of the proposed architecture is evaluated via discrete-event simulations for a wide range of synthetic-traffic cases. The simulation results show that high-throughput operation of ≥90% can be achieved even for small message sizes, i.e., 32 KB for all-to-all communication and 2 KB for uniform random traffic, at a data rate of 400 Gb/s and a switch reconfiguration time of ≤72 ns. Moreover, if 100-ns reconfiguration times are achievable as opposed to 150-ns, then for the all-to-all traffic case a 16% and 28% reduction in completion time can be achieved for message sizes of 8 KB and 1 KB, respectively. In a forthcoming era of optically interfaced processors and accelerators, nanosecond-scale photonic switches appear as a highly promising solution for keeping up with the intra-node bandwidth scaling due to their high-bandwidth, low-latency and fast-switching capabilities.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

The Role of Hydrophobic Nodes in the Dynamics of Class A β-Lactamases

Class A β-lactamases are known for being able to rapidly gain broad spectrum catalytic efficiency against most β-lactamase inhibitor combinations as a result of elusively minor point mutations. The evolution in class A β-lactamases occurs through optimisation of their dynamic phenotypes at different timescales. At long-timescales, certain conformations are more catalytically permissive than others while at the short timescales, fine-grained optimisation of free energy barriers can improve efficiency in ligand processing by the active site. Free energy barriers, which define all coordinated movements, depend on the flexibility of the secondary structural elements. The most highly conserved residues in class A β-lactamases are hydrophobic nodes that stabilize the core. To assess how the stable hydrophobic core is linked to the structural dynamics of the active site, we carried out adaptively sampled molecular dynamics (MD) simulations in four representative class A β-lactamases (KPC-2, SME-1, TEM-1, and SHV-1). Using Markov State Models (MSM) and unsupervised deep learning, we show that the dynamics of the hydrophobic nodes is used as a metastable relay of kinetic information within the core and is coupled with the catalytically permissive conformation of the active site environment. Finally, our results collectively demonstrate that the class A enzymes described here, share several important dynamic similarities and the hydrophobic nodes comprise of an informative set of dynamic variables in representative class A β-lactamases.

59 BASIC BIOLOGICAL SCIENCES↗

Respiration Signal Pattern Analysis for Doppler Radar Sensor with Passive Node and Its Application in Occupancy Sensing of a Stationary Subject

Doppler radar node occupancy sensors are promising for applications in smart buildings due to their simple circuits and price advantage compared to quadrature radar sensors. However, single-channel sensitivity limitations may result in low sensitivity and misinterpreted motion rates if the detected subject is at or close to “null” points. We designed and tested a novel method to eliminate such limits, demonstrating that passive nodes can be used to detect a sedentary person regardless of position. This method is based on characteristics of chest motion due to respiration, found via both simulations and experiments based on a sinusoidal model and a more realistic model of cardiorespiratory motion. In addition, respiratory rate variability is considered to distinguish a true human presence from a mechanical target. Sensor node data were collected simultaneously with an infrared camera system, which provided a respiration signal reference, to test the algorithm with 19 human subjects and a mechanical target. The results indicate that a human presence was detected with 100% accuracy and successfully differentiated from a mechanical target in a controlled environment. The developed method can greatly improve the occupancy detection accuracy of single-channel radar-based occupancy sensors and facilitate their adoption in smart building applications.

Song, Chenyan↗

Quantized vortices around wavefunction nodes. II

The expectation of quantized vortices around the nodes of wavefunctions is formulated in terms of Schroedinger quantum mechanics, and the derivation is shown to depend only on the requirement that the wavefunction be single-valued and continuous. The implications of circulation for the topology of the nodes are discussed, and consideration is given to the nodes and circulation of a smooth wavefunction in D dimensions and to the significance of exceptional nodal points. The theoretical results are illustrated by an example of an infinite field of regularly spaced vortices.

Hirschfelder, J. O.↗

A Stirling engine analysis method based upon moving gas nodes

A Lagrangian nodal analysis method for Stirling engines (SEs) is described, validated, and applied to a conventional SE and an isothermalized SE (with fins in the hot and cold spaces). The analysis employs a constant-mass gas node (which moves with respect to the solid nodes during each time step) instead of the fixed gas nodes of Eulerian analysis. The isothermalized SE is found to have efficiency only slightly greater than that of a conventional SE.

Martini, W. R.↗

Strut-node joint conjugates for the assembly of semi-permanent or reusable truss structures

When strut and node components are used for truss construction an assembly problem occurs if a strut must be fitted between nodes whose separation distance is either closer or farther than the design intended. This condition is the result of normal dimensional variations that occur in any manufacturing process. In such circumstances two actions would permit continued assembly: change the effective strut length, and move the nodes. Assuming continued assembly is the most attractive alternative, attention is focused on accomplishing these actions as part of the assembly process.

Brewer, W. V.↗

20 kHz, 25 kVA node power transformer

The electrical and mechanical design information and the electrical and thermal testing performed on the 440-208-V rms, 20-kHz, 25-kVa prototype node transformer are summarized. The calculated efficiency of the node transformer is 99.3 percent based on core loss and copper loss test data, and its maximum calculated load regulation is 0.7 percent. The node transformer has a weight of 19.7 lb and has a power density of 0.8 lb/kW. The hot-spot temperature rise is estimated to be 33 C above the cold plate mounting base. This proof-of-concept transformer design is a viable candidate for the space station Freedom application.

Hussey, S.↗

Spaceport aurora: An orbiting transportation node

With recent announcements of the development of permanently staffed facilities on the Moon and Mars, the national space plan is in need of an infrastructure system for transportation and maintenance. A project team at the University of Houston College of Architecture and the Sasakawa International Center for Space Architecture, recently examined components for a low Earth orbit (LEO) transportation node that supports a lunar build-up scenario. Areas of investigation included identifying transportation node functions, identifying existing space systems and subsystems, analyzing variable orbits, determining logistics strategies for maintenance, and investigating assured crew return systems. The information resulted in a requirements definition document, from which the team then addressed conceptual designs for a LEO transportation node. The primary design drivers included: orbital stability, maximizing human performance and safety, vehicle maintainability, and modularity within existing space infrastructure. For orbital stability, the power tower configuration provides a gravity gradient stabilized facility and serves as the backbone for the various facility components. To maximize human performance, human comfort is stressed through zoning of living and working activities, maintaining a consistent local vertical orientation, providing crew interaction and viewing areas and providing crew return vehicles. Vehicle maintainability is accomplished through dual hangars, dual work cupolas, work modules, telerobotics and a fuel depot. Modularity is incorporated using Space Station Freedom module diameter, Space Station Freedom standard racks, and interchangeable interior partitions. It is intended that the final design be flexible and adaptable to provide a facility prototype that can service multiple mission profiles using modular space systems.

Source record↗

Space Station resource node flow field analysis

An analysis of the flow field within the Space Station Freedom resource node with operational intermodule ventilation and temperature/humidity control ventilation systems has been conducted. The INS3D code, an incompressible, steady-state Navier-Stokes solver has been used to assess the design of the ventilation system via quantification of the level of fluid mixing and identification of 'dead air' regions and short-circuit ventilation. Numerical results indicate significant short-circuit ventilation in the forward and midsections of the node and insufficient fluid mixing is found to exist in the aft node section. These results as well as results from a solution grid dependence study are presented.

Kania, Lee↗

An assessment of four-noded plate finite elements based on a generalized third-order theory

Plate finite elements based on the generalized third-order theory of Reddy and the first-order shear deformation theory are analyzed and compared on the basis of thick and thin plate modeling behavior, distortion sensitivity, overall accuracy, reliability, and efficiency. In particular, several four-noded Reddy-type elements and the nine-noded Lagrangian and heterosis (Mindlin-type) plate elements are analyzed to assess their behavior in bending, vibration, and stability of isotropic and laminated composite plates. A four-noded Reddy-type element is identified which is free of all spurious stiffness and zero energy modes, computationally efficient, and suitable for use in any general-purpose finite element program.

Averill, R. C.↗

A simple node and conductor data generator for SINDA

This paper presents a simple, automated method to generate NODE and CONDUCTOR DATA for thermal match modes. The method uses personal computer spreadsheets to create SINDA inputs. It was developed in order to make SINDA modeling less time consuming and serves as an alternative to graphical methods. Anyone having some experience using a personal computer can easily implement this process. The user develops spreadsheets to automatically calculate capacitances and conductances based on material properties and dimensional data. The necessary node and conductor information is then taken from the spreadsheets and automatically arranged into the proper format, ready for insertion directly into the SINDA model. This technique provides a number of benefits to the SINDA user such as a reduction in the number of hand calculations, and an ability to very quickly generate a parametric set of NODE and CONDUCTOR DATA blocks. It also provides advantages over graphical thermal modeling systems by retaining the analyst's complete visibility into the thermal network, and by permitting user comments anywhere within the DATA blocks.

Gottula, Ronald R.↗

Analysis of the effects of mean local node-crossing time on the evolution of Sun-synchronous orbits

An investigation of the effect of mean local node-crossing time on the evolution of Sun-synchronous orbits was undertaken during Phase-A orbit analysis for the National Oceanic and Atmospheric Administration (NOAA) O,P,Q environmental spacecraft. That analysis added to the growing body of evidence that individual Sun-synchronous missions, at differing node-crossing times, experience nodal drift rates that can differ in both magnitude and direction. A Sun-synchronous orbit is obtained by means of a nodal drift rate approximating the 0.9856-degree-per-day apparent precession of the position of the mean Sun. This drift rate is achieved through the interaction of the orbital semimajor axis and inclination in Earth's geopotential field. Influencing perturbations include atmospheric drag and, most important, the effects of solar gravitation on inclination. The present analysis examines a series of Sun-synchronous orbits with mean local node-crossing times at 1-hour intervals from 6 a.m. to 6 p.m. It considers the fixed geometry of each orbital plane with respect to both the Sun and the diurnal atmospheric bulge, then analyzes the influence of these features upon the evolution of the semimajor axix and inclination and thus upon the rate of the nodal drift in the course of 1 year.

Jordan, P.↗

Space transfer vehicle accommodations at transportation nodes

This task identifies requirements for accommodation of space transfer vehicles (STVs) at orbital transportation nodes. Requirements are based on mission models which include high energy missions and human exploration initiatives. Study data includes results of trade studies evaluating STV accommodations concepts at Space Station nodes and at alternative free-flying nodes. Data and scars on the Phase One Space Station Freedom to allow growth to the accommodation concepts are identified.

Hueter, Uwe↗

A strategy to rotate the Mars Observer orbit node line to advance the mapping schedule

The Mars Observer (MO) spacecraft was successfully launched on September 25, 1992 and will arrive at Mars on August 24, 1993. At Mars, the spacecraft will study the planet's surface, atmosphere, and gravitational and magnetic fields. In order to achieve these scientific objectives, MO will be placed in a 2 PM (descending node) sun-synchronous orbit. Upon arrival at Mars, however, the longitude of the descending node will be approximately 15 deg greater than the desired value. The baseline plan requires a 59 day `waiting' period for the correct solar orientation to occur. During this period, 28 days are required for scientific experimentation but the remaining 30.6 days potentially could be eliminated. The strategy developed in this study examined the possibility of using any `excess' Delta-V available at Mars arrival to rotate the node line to the desired value and thus allow mapping to begin earlier. A preliminary analysis completed prior to launch is described that examined the entire launch period including the required Delta-V to perform the needed nodal rotation. A more detailed study performed after launch is also summarized.

Pernicka, Henry J.↗

Independent Analysis of the Space Station Node Modal Test Data

With complex structures, comparison of independently derived sets of experimental modal parameters is an excellent way to increase confidence in the results. This paper presents modal identification results using the Eigensystem Realization Algorithm (ERA) on frequency response functions from the modal test of the Space Station Resource Node. The Resource Node is the first U.S.-built structure for the International Space Station. The modal test was conducted by the NASA Marshall Space Flight Center (MSFC) in January 1997 for the Boeing Company, who designed and built the Node. The ERA-calculated parameters are compared with independent results obtained by the MSFC test team using commercial software. There was excellent correlation of mode shapes between the two sets of results for the first 21 vibration modes of the structure up to 35 Hz. From 35 to 50 Hz, about 60 percent of 25 additional modes had excellent correlation. Natural frequencies and damping factors of most modes agreed within 0.1 Hz and 0.2 percent, respectively.

Pappa, Richard S.↗

Cooperative Data Sharing: Simple Support for Clusters of SMP Nodes

Libraries like PVM and MPI send typed messages to allow for heterogeneous cluster computing. Lower-level libraries, such as GAM, provide more efficient access to communication by removing the need to copy messages between the interface and user space in some cases. still lower-level interfaces, such as UNET, get right down to the hardware level to provide maximum performance. However, these are all still interfaces for passing messages from one process to another, and have limited utility in a shared-memory environment, due primarily to the fact that message passing is just another term for copying. This drawback is made more pertinent by today's hybrid architectures (e.g. clusters of SMPs), where it is difficult to know beforehand whether two communicating processes will share memory. As a result, even portable language tools (like HPF compilers) must either map all interprocess communication, into message passing with the accompanying performance degradation in shared memory environments, or they must check each communication at run-time and implement the shared-memory case separately for efficiency. Cooperative Data Sharing (CDS) is a single user-level API which abstracts all communication between processes into the sharing and access coordination of memory regions, in a model which might be described as "distributed shared messages" or "large-grain distributed shared memory". As a result, the user programs to a simple latency-tolerant abstract communication specification which can be mapped efficiently to either a shared-memory or message-passing based run-time system, depending upon the available architecture. Unlike some distributed shared memory interfaces, the user still has complete control over the assignment of data to processors, the forwarding of data to its next likely destination, and the queuing of data until it is needed, so even the relatively high latency present in clusters can be accomodated. CDS does not require special use of an MMU, which can add overhead to some DSM systems, and does not require an SPMD programming model. unlike some message-passing interfaces, CDS allows the user to implement efficient demand-driven applications where processes must "fight" over data, and does not perform copying if processes share memory and do not attempt concurrent writes. CDS also supports heterogeneous computing, dynamic process creation, handlers, and a very simple thread-arbitration mechanism. Additional support for array subsections is currently being considered. The CDS1 API, which forms the kernel of CDS, is built primarily upon only 2 communication primitives, one process initiation primitive, and some data translation (and marshalling) routines, memory allocation routines, and priority control routines. The entire current collection of 28 routines provides enough functionality to implement most (or all) of MPI 1 and 2, which has a much larger interface consisting of hundreds of routines. still, the API is small enough to consider integrating into standard os interfaces for handling inter-process communication in a network-independent way. This approach would also help to solve many of the problems plaguing other higher-level standards such as MPI and PVM which must, in some cases, "play OS" to adequately address progress and process control issues. The CDS2 API, a higher level of interface roughly equivalent in functionality to MPI and to be built entirely upon CDS1, is still being designed. It is intended to add support for the equivalent of communicators, reduction and other collective operations, process topologies, additional support for process creation, and some automatic memory management. CDS2 will not exactly match MPI, because the copy-free semantics of communication from CDS1 will be supported. CDS2 application programs will be free to carefully also use CDS1. CDS1 has been implemented on networks of workstations running unmodified Unix-based operating systems, using UDP/IP and vendor-supplied high- performance locks. Although its inter-node performance is currently unimpressive due to rudimentary implementation technique, it even now outperforms highly-optimized MPI implementation on intra-node communication due to its support for non-copy communication. The similarity of the CDS1 architecture to that of other projects such as UNET and TRAP suggests that the inter-node performance can be increased significantly to surpass MPI or PVM, and it may be possible to migrate some of its functionality to communication controllers.

DiNucci, David C.↗

A Scalable Software Architecture Booting and Configuring Nodes in the Whitney Commodity Computing Testbed

The Whitney project is integrating commodity off-the-shelf PC hardware and software technology to build a parallel supercomputer with hundreds to thousands of nodes. To build such a system, one must have a scalable software model, and the installation and maintenance of the system software must be completely automated. We describe the design of an architecture for booting, installing, and configuring nodes in such a system with particular consideration given to scalability and ease of maintenance. This system has been implemented on a 40-node prototype of Whitney and is to be used on the 500 processor Whitney system to be built in 1998.

Fineberg, Samuel A.↗