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At least 145 records · Page 8

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DOE OSTI2019

Blackcomb2: Hardware-Software Co-design for Nonvolatile Memory in Exascale Systems

The impending shift from DRAM and Flash to fast nonvolatile memory (NVM) provides a game-changing opportunity to rethink traditional system architectures; to address their energy inefficiencies; to leverage the new devices for greater performance; and to exploit the new capability of nonvolatility to enhance system resilience, even in the face of larger system scale and degraded reliability of components. Building on the accomplishments of the Blackcomb Project, funded in 2010, we propose to identify, evaluate, and optimize the most promising NVM hardware and software technologies, which are essential to provide the necessary memory capacity, performance, resilience, and energy efficiency in exascale systems. Capacity and energy are the key drivers. Today's pressing application requirements mandate exascale computing; the datasets and concurrency of these applications demand memory capacity that cannot be met by traditional memory technologies. Although charge-based DRAM will endure, experts foresee only modest DRAM capacity gains. And, as moving data between levels of the hierarchy, and storing and accessing data on disk consumes significant energy, a more energy efficient solution is required. We, therefore, posit that exascale systems will need high density, energy-efficient storage technologies, such as nonvolatile memory for access, transformation, and management of exascale data. To address these issues, in this renewal request, we propose continue the work of our vertically- integrated, focussed team, where our co-design is informed by proxies and interactions with DOE co-design centers. In software, we start by assuming that nonvolatility requires new abstractions and new infrastructure, allowing persistent objects, and delivering performance gains for _le systems and robustness through fast checkpointing. In architecture, we evaluate the tradeoffs of performance and energy by employing a scalable and accurate simulation system to analyze realistic proxy applications. Through this co-design process, we rethink the whole memory architecture, from the cell to the array to the device, with ECC, wearout management, and interfaces. Finally, we provide open-source software models of these NVM-based memory systems.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2018

Performance of the Belle II Conditions Database

The Belle II experiment at KEK observed its first collisions in the summer of 2018. Processing the large amounts of data that will be produced requires conditions data to be readily available to systems worldwide in a fast and efficient manner that is straightforward for both the user and maintainer. This was accomplished by relying on industry-standard tools and methods: the conditions database is built as an HTTP REST service using tools such as Swagger for the API interface development, Payara for the Java EE application server, and Squid for the caching proxy. This article presents the design of the Belle II conditions database production environment as well as details about the capabilities and performance during both Monte Carlo campaigns and data reprocessing.

Wood, Lynn S.↗

DOE OSTI2024

Studying CPU and memory utilization of applications on Fujitsu A64FX and Nvidia Grace Superchip

ARM-based manycore CPU architectures are well-positioned to provide the rising memory throughput requirements of modern data intensive scientific applications in High Performance Computing (HPC). The Fujitsu A64FX CPU platform is based on the ARM v8.2A architecture, and is the processor of the flagship Japanese supercomputer - "Fugaku", which was previously ranked as the #1 supercomputer in the world according to the Top500 list. The Nvidia Grace superchip features 144 Neoverse V2 cores based on the ARMv9 architecture with 4x128b SVE2, providing exceptional computational power. The chip supports up to 480GB of memory, making it ideal for AI, machine learning, and scientific computing workloads. In this paper, we conduct a thorough performance exploration of a variety of parallel bandwidth-sensitive benchmarks and applications compiled with the native Fujitsu compiler on a Fugaku A64FX compute node and ARM (LLVM) Compiler on an NVIDIA Grace superchip compute node, engaging all the computational cores per cluster using OpenMP multithreading (assuming the cores can drive the available bandwidth). Our ultimate goals are to study the resource utilization of scientific applications and benchmarks on A64FX and Grace superchip, considering graph application scenarios ( GAP Benchmark suite) and eleven appli- cation proxies from the Rodinia heterogeneous benchmark suite (considering domains such as Data Mining, Bioinformatics, Fluid Dynamics, Pattern Recognition, etc.). Through exhaustive performance monitoring, we quantify the resource utilization of diverse OpenMP-based HPC applications on both the Fujitsu A64FX and the Nvidia Grace Superchip platforms.

benchmarking, Performance Analysis, High performan↗

DOE OSTI2021

Effect of boronization on plasma-facing graphite surfaces and its correlation with the plasma behavior in NSTX-U

Boronization is a Plasma Facing Component (PFC) conditioning technique widely used in tokamak machines. The National Spherical Torus Experiment-Upgrade (NSTX-U) applied this conditioning, using a plasma glow with a deuterated Trimethyl-boron (d-TMB) and He mixture. The use of boronization during the campaign improved the plasma performance, allowing longer plasma discharges and H-mode access. The chemical state of an ATJ graphite sample, used as a proxy for the NSTX-U PFCs, was monitored in-situ using the Materials Analysis Particle Probe (MAPP) diagnostic and X-ray Photoelectron Spectroscopy (XPS). The XPS data showed a progressive rise (from + fluence increased. Filterscopes were used to measure the light emitted by oxygen impurities in the plasma near the surface of the PFC. An increase in the registered magnitude of the OII line, normalized to the Dγ intensity, was observed as the concentration of O on the ATJ surface increased. The plasma performance was found to be strongly correlated to oxygen impurity concentrations at the plasma edge and on the PFC surface, as measured by the discharge length and access to the H-mode regime. In this work, we present a quantitative analysis of the evolution of the chemistry of the ATJ surface, and the oxygen presence in the plasma-material interface, and report relevant plasma parameters observed during the same period of time.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2022

Quantitative interpretation of time-lapse seismic data at Farnsworth field unit: Rock physics modeling, and calibration of simulated time-lapse velocity responses

Here, this study investigates the contribution of fluid saturation variation to the time-lapse velocity response by performing fluid substitution modeling. The methodology is exemplified by the time-lapse seismic monitoring of carbon dioxide at Farnsworth field unit (FWU). In order to evaluate the fluid distribution in a matured oil reservoir, the Southwest Regional Partnership (SWP) acquired multiple vertical seismic profile (VSP) surveys at different times during the CO 2 –water alternatinggas (WAG) injection period. In this work, we present a thorough methodology for computing the elastic response of the saturated rock for different fluid saturations using a site-specific petro-elastic model (PEM). The output from the PEM was combined with results from a fluid compositional model to compute the seismic velocities at times corresponding to each VSP survey. To produce a calibrated simulated response, the measured time-lapse seismic velocities were integrated into the numerical simulation model. The mismatches between the predicted and measured time-lapse velocities were minimized through an iterative calibration process using a trained artificial neural network proxy (ANN) coupled with a particle swarm optimizer (PSO). Our study indicates that the hybrid optimization workflow can effectively perform the history matching. With an accurate prediction of the hydrodynamic properties, the migration of CO 2 within the subsurface was modeled by predicting the spatial velocity distribution for a radius of 305 m around the injection well. The technology demonstrated and the expertise gained from this study can guide similar CO 2 -WAG projects.

58 GEOSCIENCES↗

DOE OSTI2024

Initial Laboratory Measurements Probing Hydrogen Interactions with Eagle Ford Shale and Pyrite: Potential Implications for Subsurface Hydrogen Storage

Hydrogen (H 2 ) has the potential to be a transformative technology as an enabler to a low-carbon future and promoter of renewable energy. When H 2 is injected and stored in the subsurface, it has the potential to interact with the caprock (usually shale) which overlies and seals the storage reservoir. Here, this study examines geochemical reactions or changes in surface morphology to Eagle Ford Shale, a proxy for caprock, upon exposure to H 2 at 50°C and 10.3 MPa. Reactions were also performed with N 2 to provide an experimental control. Scanning Electron Microscopy with Energy Dispersive Spectroscopy (SEM-EDS), Atomic Force Microscopy (AFM), and Optical Photothermal-Infrared (O-PTIR) Spectroscopy were applied to quantify changes on the microscale and nanoscale level. Fluid chemistry changes were monitored with Ion Chromatography (IC) and Inductively Coupled Plasma Mass Spectrometry (ICP-MS). Exposure of Eagle Ford Shale to H 2 gas alone did not result in any alterations to the shale chemically or any changes in the surface morphology. Exposure of Eagle Ford Shale to both H 2 and water as well as N 2 and water resulted in changes to the surface morphology because of gypsum dissolution and reprecipitation, thus indicating that H 2 is not necessary to promote changes. Pure pyrite was the most reactive with H 2 possibly resulting in a reduction to pyrrhotite. These initial studies suggest that the extent of reactions activated by hydrogen with caprock are minor under the temperature and pressure conditions that would represent underground hydrogen storage.

08 HYDROGEN↗

DOE OSTI2025

Machine learning-accelerated discovery of heat-resistant polysulfates for electrostatic energy storage

The development of heat-resistant dielectric polymers that withstand intense electric fields at high temperatures is critical for electrification. Balancing thermal stability and electrical insulation, however, is exceptionally challenging as these properties are often inversely correlated. A traditional intuition-driven polymer design approach results in a slow discovery loop that limits breakthroughs. Here we present a machine learning-driven strategy to rapidly identify high-performance, heat-resistant polymers. A trustworthy feed-forward neural network is trained to predict key proxy parameters and down select polymer candidates from a library of nearly 50,000 polysulfates. The highly efficient and modular sulfur fluoride exchange click chemistry enables successful synthesis and validation of selected candidates. A polysulfate featuring a 9,9-di(naphthalene)-fluorene repeat unit exhibits excellent thermal resilience and achieves ultrahigh discharged energy density with over 90% efficiency at 200 °C. Its exceptional cycling stability underscores its promise for applications in demanding electrified environments.

Li, He↗

DOE OSTI2021

From noise to information: The transfer function formalism for uncertainty quantification in reconstructing the nuclear density

The neutron distribution of neutron-rich nuclei provides critical information on the structure of finite nuclei and neutron stars. Parity violating experiments—such as PREX and CREX—provide a clean and largely model-independent determination of neutron densities. Such experiments, however, are challenging and expensive, which is why sound statistical arguments are required to maximize the information gained. We introduce a new framework, the “transfer function formalism,” aimed at uncertainty quantification, model selection, and experimental design in the context of neutron densities. The transfer functions (TFs) are built analytically by expressing the linear response of the objective function (e.g., χ2) to small perturbations of the data. Using the TF formalism, we are able to analyze the expected overall uncertainty—quantified in terms of bias and variance—of the mean square radius and interior density of 48 Ca and 208 Pb. Using relativistic mean field models as a proxy for the weak-charge density—and assuming that a total of five measurements could be performed on the weak form factor of 48 Ca and 208 Pb—we identify the optimal models and experimental locations that minimize the uncertainty in the extraction of the radius and interior density. We also explore the use of the TF formalism to understand the influence of prior distributions for the model parameters, as well as the optimization of model hyperparameters not constrained by the data. Here,we establish how the choice of experimental locations and the model that is used can have a significant impact on the final uncertainties of the extracted quantities of interest. For challenging experiments such as CREX and PREX, a proper quantification of such uncertainties is critical. We have demonstrated how the TF formalism provides several advantages for this type of analysis.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2015

TADSim: Discrete Event-based Performance Prediction for Temperature Accelerated Dynamics

Next-generation high-performance computing will require more scalable and flexible performance prediction tools to evaluate software--hardware co-design choices relevant to scientific applications and hardware architectures. Here, we present a new class of tools called application simulators—parameterized fast-running proxies of large-scale scientific applications using parallel discrete event simulation. Parameterized choices for the algorithmic method and hardware options provide a rich space for design exploration and allow us to quickly find well-performing software--hardware combinations. We demonstrate our approach with a TADSim simulator that models the temperature-accelerated dynamics (TAD) method, an algorithmically complex and parameter-rich member of the accelerated molecular dynamics (AMD) family of molecular dynamics methods. The essence of the TAD application is captured without the computational expense and resource usage of the full code. We accomplish this by identifying the time-intensive elements, quantifying algorithm steps in terms of those elements, abstracting them out, and replacing them by the passage of time. We use TADSim to quickly characterize the runtime performance and algorithmic behavior for the otherwise long-running simulation code. We extend TADSim to model algorithm extensions, such as speculative spawning of the compute-bound stages, and predict performance improvements without having to implement such a method. Validation against the actual TAD code shows close agreement for the evolution of an example physical system, a silver surface. Finally, focused parameter scans have allowed us to study algorithm parameter choices over far more scenarios than would be possible with the actual simulation. This has led to interesting performance-related insights and suggested extensions.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2021

Instruction Roofline: An insightful visual performance model for GPUs

The Roofline performance model provides an intuitive approach to identify performance bottlenecks and guide performance optimization. However, the classic FLOP-centric approach is inappropriate for the emerging applications that perform more integer operations than floating point operations. In this article, we reintroduce our Instruction Roofline Model on NVIDIA GPUs and expand our evaluation of it. The Instruction Roofline incorporates instructions and memory transactions across all memory hierarchies together, and provides more performance insights than the FLOP-oriented Roofline Model, that is, instruction throughput, stride memory access patterns, bank conflicts, and thread predication. We use our Instruction Roofline methodology to analyze eight proxy applications: HPGMG from AMReX, Matrix Transpose benchmarks, ADEPT from MetaHipMer's sequence alignment phase, EXTENSION from MetaHipMer's local assembly phase, CUSP, cuSPARSE, cudaTensorCoreGemm, and cuBLAS. We demonstrate the ability of our methodology to understand various aspects of performance and performance bottlenecks on NVIDIA GPUs and motivate code optimizations.

Ding, N↗

DOE OSTI2018

Effect of boronization on plasma-facing graphite surfaces and its correlation with the plasma behavior in NSTX-U

Boronization is a Plasma Facing Component (PFC) conditioning technique widely used in tokamak machines. The National Spherical Torus Experiment-Upgrade (NSTX-U) applied this conditioning, using a plasma glow with a deuterated Trimethyl-boron (d-TMB) and He mixture. The use of boronization during the campaign improved the plasma performance, allowing longer plasma discharges and H-mode access. The chemical state of an ATJ graphite sample, used as a proxy for the NSTX-U PFCs, was monitored in-situ using the Materials Analysis Particle Probe (MAPP) diagnostic and X-ray Photoelectron Spectroscopy (XPS). The XPS data showed a progressive rise (from < 5% to 23%) in the oxygen concentration of the boronized ATJ sample as the D+ fluence increased. Filterscopes were used to measure the light emitted by oxygen impurities in the plasma near the surface of the PFC. An increase in the registered magnitude of the OII line, normalized to the Dγ intensity, was observed as the concentration of O on the ATJ surface increased. The plasma performance was found to be strongly correlated to oxygen impurity concentrations at the plasma edge and on the PFC surface, as measured by the discharge length and access to the H-mode regime. In this work, we present a quantitative analysis of the evolution of the chemistry of the ATJ surface, and the oxygen presence in the plasma-material interface, and report relevant plasma parameters observed during the same period of time.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2020

μ⋆ masses: weak-lensing calibration of the Dark Energy Survey Year 1 redMaPPer clusters using stellar masses

ABSTRACT We present the weak-lensing mass calibration of the stellar-mass-based μ⋆ mass proxy for redMaPPer galaxy clusters in the Dark Energy Survey Year 1. For the first time, we are able to perform a calibration of μ⋆ at high redshifts, z > 0.33. In a blinded analysis, we use ∼6000 clusters split into 12 subsets spanning the ranges 0.1 ≤ z < 0.65 and μ⋆ up to ${\sim} 5.5 \times 10^{13} \, \mathrm{M}_{\odot }$, and infer the average masses of these subsets through modelling of their stacked weak-lensing signal. In our model, we account for the following sources of systematic uncertainty: shear measurement and photometric redshift errors, miscentring, cluster-member contamination of the source sample, deviations from the Navarro–Frenk–White halo profile, halo triaxiality, and projection effects. We use the inferred masses to estimate the joint mass–μ⋆–z scaling relation given by $\langle M_{200c} | \mu _{\star },z \rangle = M_0 (\mu _{\star }/5.16\times 10^{12} \, \mathrm{M_{\odot }})^{F_{\mu _{\star }}} ((1+z)/1.35)^{G_z}$. We find $M_0= (1.14 \pm 0.07) \times 10^{14} \, \mathrm{M_{\odot }}$ with $F_{\mu _{\star }}= 0.76 \pm 0.06$ and Gz = −1.14 ± 0.37. We discuss the use of μ⋆ as a complementary mass proxy to the well-studied richness λ for: (i) exploring the regimes of low z, λ < 20 and high λ, z ∼ 1; and (ii) testing systematics such as projection effects for applications in cluster cosmology.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2023

Improving Subsurface Stress Characterization for Carbon Dioxide Storage Projects by Incorporating Machine Learning Techniques

The overall objective of this project is to develop a framework for reliable characterization and prediction of the state of stress in the overburden and underburden (including the basement) in CO 2 storage reservoirs using machine learning and integrated geomechanics and geophysical methods. Specifically, we propose to develop workflow encompassing of technologies and/or methods to predict stress and pressure changes due to CO 2 injection in an active tertiary recovery site and their impacts on subtle fault activation, fractures and occurrence of microseismic events and compare responses to field observations. In this project, we anticipate using dataset from the Farnsworth field Unit (FWU) which is operated by Purdure Petroleum. A novel elastic-waveform VSP inversion technique will be used to estimate high-resolution spatial and temporal changes of elastic moduli in CO 2 storage reservoirs, which will be combined with velocity-stress relationship derived from laboratory tests to obtain subsurface pressure and stress. Clustered microseismic data will be jointly inverted for improved focal mechanisms. Least-squares reverse-time migration of microseismic waveform data will be performed to directly image fracture/fault zones. Additionally, a deep neural network machine learning technique with convolutional and recurrent layers will be used for learning the spectro-temporal structures in microseismic waveforms. The results of this geotechnical data analysis will be integrated to develop a high-resolution 3D mechanical earth model extending from the overburden sealing formations to the underburden including the basement. Mechanical properties will be derived through integration of mechanical logs, tests, available results from chemo-mechanical laboratory tests, and elastic inversion of seismic data using a combination of Bayesian and stochastic methods as well as machine learning technique. Failure features (faults/fractures) will be represented and/or modeled based on seismic and core data analysis. A transient hydrodynamic-geomechanical model will be developed through coupling with the calibrated FWU reservoir simulation model. The full physics coupled model will be used to train a reduced order proxy model using machine learning algorithm for estimating stress which will then be used with appropriate constitutive relationships and forward seismological models to simulate pressure changes and induced microseismicity. An advanced optimization framework will be developed to perform a history match to minimize error between field observations and simulated. The history matched proxy model will be verified against the full-physics equivalent. The field observations that will be used in the coupled model calibration process include pressure/stress inverted from VSP, moment magnitude from microseismic analysis, real time downhole pressure measurements, production and injection data. Parameter sensitivity and uncertainty analysis will be performed to characterize the impact of model parameter uncertainty on stress estimates. The proposed project will have significant impact on future field implementation of the proposed technology. Because the project field site is an ongoing CO 2 EOR development, the value of the new technology will be demonstrated in an operational context and evaluated as a viable risk mitigation strategy. Cost/benefit will be evaluated together with the various commercial incentives for CO 2 sequestration available to oil and gas operators. The extensive available dataset and ongoing data acquisition under the SWP Phase III work plan provides flexibility for investigation of multiple approaches and reduces technical risk.

58 GEOSCIENCES↗

DOE OSTI2022

Adjusting solar-induced fluorescence to nadir-viewing provides a better proxy for GPP

Solar-induced fluorescence (SIF) provides key information for inferring terrestrial gross primary productivity (GPP). However, there is little research on analyzing the performance of nadir-adjusted SIF (SIF nadir ) on GPP, compared to total SIF emitted by all leaves (SIF total ) for reducing the viewing angle effects and estimating GPP. Besides, there have been controversial opinions on whether SIF total is better correlated to GPP than raw SIF observations (SIF obs ). Here we systematically analyzed the relationship between raw/nadir/total SIF (i.e., SIF obs , SIF nadir and SIF total ) and GPP and investigated the underlying mechanism, using multi-angular field measurements and eddy covariance data in wheat and corn crops at sub-daily scale. We further compared the performance of SIF obs , SIF nadir and SIF total in estimating GPP using the TROPOspheric Monitoring Instrument (TROPOMI) SIF and concurrent AmeriFlux measurements at daily scale. Furthermore, the results indicate that diurnal SIF nadir has stronger correlations to GPP than SIF obs for field measurements, with the increase of mean coefficient of determination (R 2 ) by 0.05–0.07 for far-red band and 0.11–0.20 for red band. SIF nadir shows comparable performance with SIF total for both far-red and red bands. Although the viewing angle effects dominate the difference in estimating GPP between SIF nadir and SIF obs , the correlation between light use efficiency (LUE) and fesc further determines the different performance of SIF nadir and SIF total in estimating GPP. TROPOMI-based analysis further confirms that SIF nadir overall has higher correlations to AmeriFlux GPP than SIF obs for different plant functional types and shows similar performance with SIF total . Compared to SIF total , the estimation of SIF nadir independent of viewing angle effects does not require any canopy structure parameters, and thus offers promising potential for reliably estimating regional and global GPP.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

UMT

UMT is a Sn deterministic thermal radiative transport Fortran proxy application. Its primary purpose is to research how data layout, programming paradigms and architectures effect the implementation and performance of Sn transport in Fortran on unstructured meshes. It is based on the LLNL Teton Sn deterministic thermal radiative transport code.

Yee, BenC.↗

DOE OSTI2018

Neural Networks as Surrogates of Nonlinear High-Dimensional Parameter-to-Prediction Maps.

We present a preliminary investigation of the use of Multi-Layer Perceptrons (MLP) and Recurrent Neural Networks (RNNs) as surrogates of parameter-to-prediction maps of com- putational expensive dynamical models. In particular, we target the approximation of Quan- tities of Interest (QoIs) derived from the solution of a Partial Differential Equations (PDEs) at different time instants. In order to limit the scope of our study while targeting a rele- vant application, we focus on the problem of computing variations in the ice sheets mass (our QoI), which is a proxy for global mean sea-level changes. We present a number of neural network formulations and compare their performance with that of Polynomial Chaos Expansions (PCE) constructed on the same data.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2018

Neural Networks as Surrogates of Nonlinear High-Dimensional Parameter-to-Prediction Maps

We present a preliminary investigation of the use of Multi-Layer Perceptrons (MLP) and Recurrent Neural Networks (RNNs) as surrogates of parameter-to-prediction maps of computational expensive dynamical models. In particular, we target the approximation of Quantities of Interest (QoIs) derived from the solution of a Partial Differential Equations (PDEs) at different time instants. In order to limit the scope of our study while targeting a relevant application, we focus on the problem of computing variations in the ice sheets mass (our QoI), which is a proxy for global mean sea-level changes. We present a number of neural network formulations and compare their performance with that of Polynomial Chaos Expansions (PCE) constructed on the same data.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2018

The Auxiliary Space Preconditioner for the de Rham Complex

Here we generalize the construction and analysis of auxiliary space preconditioners to the $n$-dimensional finite element subcomplex of the de Rham complex. These preconditioners are based on a generalization of a decomposition of Sobolev space functions into a regular part and a potential. A discrete version is easily established using the tools of finite element exterior calculus. We then discuss the four-dimensional de Rham complex in detail. By identifying forms in four dimensions with simple proxies, form operations are written out in terms of familiar algebraic operations on matrices, vectors, and scalars. This provides the basis for our implementation of the preconditioners in four dimensions. Extensive numerical experiments illustrate their performance, practical scalability, and parameter robustness, all in accordance with the theory.

4D↗