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Pathways to Highly Oxidized Products in the Δ3-Carene + OH System
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Nonclassical autophagy activation pathways are essential for production of infectious Influenza A virus in vitro
Autophagy is a critical mechanism deployed by eukaryotic cells in response to stress, including viral infection, to boost the innate antimicrobial responses. However, an increasing number of pathogens hijack the autophagic machinery to facilitate their own replication. Influenza A virus (IAV), responsible for several global pandemics, has an intricate dependence on autophagy for successful replication in mammalian cells. To elucidate key chokepoints in the host stress responses facilitating IAV replication, we constructed a meta-transcriptome of IAV and host gene expression dynamics during early (1–3 hpi), mid (4–6 hpi), and late (8–12 hpi) stages of the viral replication cycle at two multiplicities of infection (MOI): 1 and 5. We supplemented the global transcriptome study with phosphoproteomic analysis of stress-activated protein kinase (SAPK/JNK) signaling in lung carcinoma (predominantly used as an in vitro model of IAV replication) and normal human bronchial epithelial cells. We report significant differences in the activation profiles of autophagy regulating genes upon IAV infection at the two MOI as well as divergent dependence on ULK1 signaling within the normal and cancer cells. Regardless of the cell model, JNK-Thr187 signaling was crucial for the production of infectious viral particles.
Thermodynamic and Kinetic Modeling Directs Pathway Optimization for Isopropanol Production in a Gas-Fermenting Bacterium
Highly efficient bioproduction from gaseous substrates (e.g., hydrogen and carbon oxides) will require systematic optimization of the host microbes. To date, the rational redesign of gas-fermenting bacteria is still in its infancy, due in part to the lack of quantitative and precise metabolic knowledge that can direct strain engineering.
Technology Case Study: Techno-Economic and Life Cycle Analysis for Microalgae Conversion Pathways to Fuels and Products
This technology case study report details the cost and sustainability prospects for an emerging feedstock - microalgae - converted to fuels and products via a fractionation and upgrading approach termed combined algae processing (CAP). Detailed techno-economic analysis (TEA) and life cycle analysis (LCA) are conducted for the conversion of farmed algae biomass, with two primary scenarios considering the conversion of either high-compositional-quality biomass enriched in lipids (high-lipid [HL]) or lower-quality biomass enriched in protein (high-protein [HP]). Each scenario employs a different biorefinery configuration tailored towards extracting the maximum value from the given biomass composition. The HL scenario produces fuels and non-isocyanate polyurethane (NIPU) as the primary products, while the HP scenario products fuels and a residual solid coproduct which can be used as a co-feed for producing thermoplastics. The results for the HL scenario were particularly promising, with a minimum fuel selling price (MFSP) of $\$$3.68 per gasoline gallon equivalent (GGE) and fuel GHG emissions translating to 54%-76% reduction compared to petroleum fuels depending on the coproduct handling method used. In contrast, the HP scenario faced more challenges in producing biofuels economically, projecting an MFSP of $\$$7.92/GGE despite significant revenues from the residual algae solids. LCA results for the HP case reflected a 24% reduction potential in biorefinery-level GHG emissions. However, these GHG reductions were primarily associated with the thermoplastic coproduct, which accounted for 93% of all biorefinery outputs by mass. Using a process-level allocation method, carbon intensity results were less promising, indicating a net increase in fuel GHG emissions versus petroleum fuels and highlighting the reliance of this scenario on the thermoplastic coproduct.
Pathways to Highly Oxidized Products in the Δ3-Carene + OH System
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Concentrated Solar Power as a Pathway for Electrolytic Hydrogen Production
William Xi and Mark Ruth of the National Renewable Energy Laboratory (NREL), will present a new solar-electrolysis technoeconomic assessment capability: low-temperature and high-temperature electrolysis in the System Advisor Model (SAM) environment. They will also present analysis results including opportunities for solar-hydrogen systems to achieve the $2/kg hydrogen cost target.
Cross-database comparisons on the greenhouse gas emissions, water consumption, and fossil-fuel use of plastic resin production and their post-use phase impacts
Resin production and post-use pathways have cross-database discrepancies due to different temporal/geographic representation, technologies, and assumptions. These differences can distort comparisons across alternatives and confound efforts to establish standards based on the plastics’ life-cycle impacts. Thus, this study quantifies the degree and identifies the sources of cross-database discrepancies across four LCA databases (GREET, USLCI, Ecoinvent, and GaBi) for five resin production pathways and three post-use phases. For resin production pathways, all resins showed significant cross-database discrepancy in their global warming impacts: the degree of discrepancy was significant to recommend a consistent choice of database to users any LCA comparisons across different products. For post-use phases, landfill datasets had relatively lower degree of cross-database discrepancy than incineration and mechanical recycling. Different metadata characteristics were the sources of some cross-database discrepancies while other parts could be explained by the original differences in the life-cycle inventory sourced from different producers and plants.
Considering Strain Variation and Non-Type Strains for Yeast Metabolic Engineering Applications
A variety of yeast species have been considered ideal hosts for metabolic engineering to produce value-added chemicals, including the model organism Saccharomyces cerevisiae, as well as non-conventional yeasts including Yarrowia lipolytica, Kluyveromyces marxianus, and Pichia pastoris. However, the metabolic capacity of these microbes is not simply dictated or implied by genus or species alone. Within the same species, yeast strains can display distinct variations in their phenotypes and metabolism, which affect the performance of introduced pathways and the production of interesting compounds. Moreover, it is unclear how this metabolic potential corresponds to function upon rewiring these organisms. These reports thus point out a new consideration for successful metabolic engineering, specifically: what are the best strains to utilize and how does one achieve effective metabolic engineering? Understanding such questions will accelerate the host selection and optimization process for generating yeast cell factories. In this review, we survey recent advances in studying yeast strain variations and utilizing non-type strains in pathway production and metabolic engineering applications. Additionally, we highlight the importance of employing portable methods for metabolic rewiring to best access this metabolic diversity. Finally, we conclude by highlighting the importance of considering strain diversity in metabolic engineering applications.
Hydrotreatment of Nylon 66 and Amide Model Compounds Over Sulfided NiMo Catalysts
Molybdenum sulfide-based catalysts, such as nickel–molybdenum on alumina (NiMoS x /Al 2 O 3 ), are widely used in hydrotreating and have potential for catalyzing waste plastic conversion via hydrogenolysis, yet their performance, such as reaction kinetics and network, for amide-rich polymer feeds is poorly defined. Here we combine Nylon 66 with the amide model compound, N,N-dibutylhexanediamide (DBDAD), to quantify hydrodeoxygenation (HDO) and hydrodenitrogenation (HDN) chemistry in a stirred batch reactor (53 bar H 2 , 280–320°C). DBDAD conversion is near-linear with time, indicating strong adsorption of the substrates on the active sites. Time-resolved product identification indicates parallel C─O first-cleavagedeoxygenation (DO) and C─N first-cleavagedenitrogenation (DN) sequences proceeding through amine and diol intermediates, respectively, to C 4 ─C 6 alkanes. Increasing temperature shifts selectivity toward DN, decreasing the initial r(DO)/r(DN) from 1.38 (280°C) to 0.69 (320°C), with an apparent activation energy of 173 kJ mol −1 for DBDAD conversion. At 300°C, nylon 66 converts faster than DBDAD, producing a complex mixture of oxygen- and nitrogen-containing species and an initial rate ratio r(DO)/r(DN) of 1.6. No heteroaromatic nitrogen products are detected by the method used. These results provide reaction pathways and product signatures relevant to hydro-processing catalysts exposed to polyamide-derived streams.
Determining Design Criteria for Feeding Biomass into a Fluidized Bed Using a Feed Screw
Many pathways have been discovered for the thermochemical conversion of biomass to products. These pathways often show very promising results on the benchtop scale and could be economical with the appropriate scale up. However, many of the fundamental challenges of scaling up thermochemical reactions are not well understood. One primary problem area that rarely receives much upfront attention is feeding large quantities of biomass into thermochemical reactors. As biomass transitions from ambient to reactor conditions, it undergoes chemical and physical changes that affect its flowability. Often these changes lead to agglomeration of feed particles within the transfer screw, leading to large clumps of feed entering and disrupting the fluidized bed, or more critically leading to a plug in the feed screw causing costly downtime and maintenance to remove. This transitional phase must be better understood for scale up of conversion technologies to be successful. The Feedstock-Conversion Interface Consortium (FCIC) is a collaboration of eight National Laboratories. FCIC is currently conducting research on screw feeding of biomass into thermochemical fluidized bed reactors. Heat transfer models have been constructed for the screw/reactor interface. Mechanical forces on biomass within screw feeder are being determined, as well as how those forces change by varying feed screw design. Feedstock physical and chemical properties are then being measured along these temperature and mechanical force gradients. This work will better inform feed screw design for scale up, increasing the success rate of future biorefineries. Discussion will include research approach, testing, and preliminary results.
Thermodynamic Limits of Redox-Based Thermochemical Processes (REDOTHERM)
Solar thermochemical fuel production is a potential pathway for the production of sustain liquid drop-in fuels, which can help decarbonize the aviation and maritime sectors. In an attempt to analyze the commercial viability of this technology, several studies have been conducted, including system and technoeconomic analysis (TEA) modeling. However, most studies to date simply assume a given redox reactor efficiency, which is significantly higher than demonstrated values to date. While it is widely recognized that utilizing a counter-current flow (CF) configuration could increase the redox reactor efficiency, an over-simplification in the thermodynamic modeling may lead to unphysical results which has been included in multiple publications. The fact that the solar redox reactor is the least developed component in the process chain makes it hard to identify technology gaps and evaluate pathways to deployment at scale using this approach. In this work, a thermodynamic model for a moving oxide system has been developed, in a general form that allows to analyze the system for different redox-active materials, under a wide range of operating conditions, for both parallel and countercurrent flows. The model capabilites are demonstrated, and the model's code will be shared as an open-source on GitHub in the next few months.
An Algal Nutrient‐Replete, Optimized Medium for Fast Growth and High Triacylglycerol Accumulation
Microalgae are promising sources to sustainably meet the global needs for energy and products. Algae grow under different trophic conditions, where nutritional status regulates biosynthetic pathways, energy production, and growth. The green alga Chromochloris zofingiensis has strong economic potential because it co-produces biofuel precursors and the high-value antioxidant astaxanthin while accumulating biomass when grown mixotrophically. As an emerging reference alga for photosynthesis, metabolism, and bioproduction, C. zofingiensis needs a defined, optimized medium to standardize experiments during fast growth for batch cultivation. Because the interplay of glucose treatment (+Glc) and mineral deficiency influences photosynthesis, growth, and the production of lipids and astaxanthin, we designed a replete nutrient medium tailored to the C. zofingiensis cellular ionome. We combined inductively coupled plasma mass spectrometry (ICP-MS) and +Glc growth curves to determine a medium that is nutrient replete for at least 5 days of +Glc logarithmic growth. We found that there are high nutritional needs for phosphorus and sulfur during mixotrophy. Iron was the only element measured for which the cellular concentration correlated with exogenous concentration and was iteratively adjusted until the cellular ionome was consistent through the logarithmic growth phase. This Chromochloris-Optimized Ratio of Elements (CORE) medium supports fast growth and high biomass and lipid accumulation without causing excess nutrient toxicity. This defined, nutrient-replete standard is important for future C. zofingiensis investigations and can be adapted for other species to support high biomass for batch cultivation. The method used to develop CORE medium shows how ionomics informs replicable media design and may be applied in industrial settings to inform cost-effective biofuel production.
Improving the Cost-Effectiveness of Algal CO2 Utilization by Synergistic Integration With Power Plant and Wastewater Treatment Operations
Creating an economic demand for carbon utilization products will require lowering the overall cost of the products to compete within the current market. Photosynthetic uptake of carbon dioxide is an emerging pathway for product development in the animal feed market that globally amounts to over 400 Billion USD and is expected to continue growing. This project aims to continue the development of a process that utilizes carbon dioxide while increasing the cost competitiveness of algae as an animal feed product. The overall goal of the project is to demonstrate an engineering-scale open raceway pond algae cultivation system (180 m2) including integration of technologies that utilize coal-fired power plant CO2 and wastewater nutrient inputs. The system is designed to maximize the cost-effectiveness and environmental benefits of algal biomass production for commodity animal feed.
Algal Biomass Conversion to Fuels via Combined Algae Processing (CAP): 2019 State of Technology and Future Research
NREL’s algae state of technology benchmarking efforts focus both on front-end algal biomass production and separately on back-end conversion to fuels through NREL’s “combined algae processing” (CAP) pathway. The production model is based on outdoor long-term cultivation data, enabled by comprehensive algal biomass production trials conducted under the Development of Integrated Screening, Cultivar Optimization, and Verification Research consortium (DISCOVR) efforts, driven by data furnished by Arizona State University (ASU) at the Arizona Center for Algae Technology and Innovation (AzCATI) testbed site. The CAP model is based on experimental efforts conducted under NREL research and development projects. This report focuses on back-end conversion of algal biomass through the CAP pathway, highlighting the 2019 updates to minimum fuel selling price (MFSP). This milestone reports on key process sustainability indicators for the CAP conversion stage including mass and carbon yields to fuels and coproducts, freshwater consumption, and facility power balances/natural gas demands.
Exploring Sustainable Critical Mineral Production in Central Appalachia: A Pathway to Economic Revitalization & Environmental Justice
The Evolve Central Appalachia (Evolve CAPP) project team was formed to explore the sustainability of critical mineral production within the Central Appalachian coal basin, spanning Virginia, West Virginia, Kentucky, and Tennessee in the United States. The initiative is evaluating the rare earth and critical mineral resource potential essential for powering clean energy technologies, while fostering a circular economy throughout the energy transition. Opportunities are being sought to address environmental justice, workforce development and responsible sourcing. By promoting greater resource utilization, the project is identifying downstream value-added industries, further fostering economic revitalization in the region.
Algal Biomass Production via Open Pond Algae Farm Cultivation: 2019 State of Technology and Future Research
NREL’s algae state of technology benchmarking efforts focus both on front-end algal biomass production and separately on back-end conversion to fuels through NREL’s “combined algae processing” (CAP) pathway. The production model is based on outdoor long-term cultivation data, enabled by comprehensive algal biomass production trials conducted under Development of Integrated Screening, Cultivar Optimization, and Verification Research (DISCOVR) consortium efforts, driven by data furnished by Arizona State University (ASU) at the Arizona Center for Algae Technology and Innovation (AzCATI) testbed site. The CAP model is based on experimental efforts conducted under NREL R&D projects. This report focuses on front-end algal biomass production, documenting the pertinent algal biomass cultivation parameters that were input to the NREL open pond algae farm model and reports on key process sustainability indicators for the biomass production stage including annual biomass yields, facility power demand, and water consumption.
Control of Carbon Allocation in Phenylpropanoid Metabolism
Understanding the molecular mechanisms by which carbon flux is partitioned in plants, and how flux through the phenylpropanoid pathway in particular is regulated and allocated to different branches of the pathway is essential for the eventual rational manipulation of phenylpropanoid flux for bioenergy applications. The phenylpropanoid pathway is responsible for the biosynthesis of a diverse array of metabolites essential for structural integrity, water transport, UV protection, and defense against herbivores and pathogens. The products of the phenylpropanoid pathway, all of which are derived from phenylalanine, range from complex, insoluble polymers such as lignin and suberin, to soluble flavonoids and hydroxycinnamate esters, to volatile compounds used to attract pollinators. By far the most abundant of these is the complex heteropolymer lignin, which accounts for a significant portion of the dry weight of not only woody plants, but also of crop residues. Decreasing or altering lignin structure to provide increased cell wall digestibility could greatly increase the cost effectiveness of converting cell wall polysaccharides to ethanol or second-generation biofuels. On the other hand, it is also possible that plants engineered to accumulate higher levels of lignin could provide improved feedstock for direct combustion and electricity generation as part of a diverse bioenergy portfolio. Consistent with the enormous commitment of energy and carbon it requires, the synthesis of lignin is under tight regulatory control. In order to influence transcription, gene-specific activators and repressors must interact with basal transcription factors and the rest of the core transcriptional machinery. In eukaryotes, this interaction is bridged by the large, multi-subunit complex known as Mediator. Despite the clear importance of Mediator throughout the eukaryotes, the complex has only recently been studied in plants. We have shown that a pair of Mediator subunits, MED5a and MED5b are required for normal regulation of phenylpropanoid pathway product accumulation. Plants lacking these proteins show increased accumulation of phenylpropanoids in multiple tissues indicating that normally they directly or indirectly repress expression of phenylpropanoid pathway genes. Furthermore, we have recently shown that MED5 plays a role in dwarfing in some low lignin plants and feedback between and within metabolic pathways of secondary metabolism in Arabidopsis. Taken together with the established roles of Mediator in transcriptional regulation, and of MED5a and MED5b in the repression of phenylpropanoid metabolism, these observations suggest that MED5a and MED5b are key components of an active, transcriptional process by which phenylpropanoid homeostasis is maintained in wild-type plants. Our research focused on expanding our understanding of the role of Mediator, as well as elucidating the mechanisms by which these proteins influence phenylpropanoid biosynthesis and how metabolite accumulation within the pathway and between metabolic pathways is essential for feedback regulatory control. This research will inform future bioengineering efforts aimed at altering carbon allocation and cell wall engineering by contributing to our understanding of the role of Mediator in regulating lignin biosynthesis, a pathway of plant metabolism that is important on a global scale.