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At least 145 records · Page 8

Small Mammal Trapping Survey for the Lawrence Livermore National Laboratory Site 300 and Corral Hollow Ecological Reserve

ECORP Consulting, Inc. conducted a nocturnal small mammal trapping survey within Lawrence Livermore National Laboratory’s (LLNL) Site 300 and the adjacent California Department of Fish and Wildlife (CDFW) Corral Hollow Ecological Reserve. Both sites are located east of the City of Livermore and southwest of the City of Tracy, Alameda and San Joaquin Counties, California (Figure 1-1). A small mammal trapping survey of the project site was conducted in 2002 in preparation for the 2005 LLNL Site-Wide Environmental Impact Statement (SWEIS; Jones & Stokes 2003). The San Joaquin pocket mouse (Perognathus inornatus) was the only special-status species (federal species of concern) captured on Site 300 during the study (West and Woollett 2003). However, since then P. inornatus was taxonomically split into separate subspecies and the pocket mouse species identified on Site 300 in 2002 is no longer considered a special-status species. The 2002 survey also captured woodrats, but identification of the subspecies was not possible. Further investigation was necessary to determine if the woodrat species on the project site was the federally listed (endangered) riparian (San Joaquin Valley) woodrat (Neotoma macrotis riparia [Formerly described as Neotoma fuscipes riparia]), the common Diablo Range woodrat (N. f. perplexa), or another form.

54 ENVIRONMENTAL SCIENCES↗

Trace Metal Dynamics and Limitations on Biogeochemical Cycling in Wetland Soils and Hyporheic Zones

Biogeochemical cycling in subsurface aquatic systems is driven by anaerobic microbial processes that employ metalloenzymes. Pure culture studies reveal that low availability of trace metals may inhibit methanogenesis, mercury methylation, and reduction of N 2 O to N 2 during denitrification. However, whether such limitations occur in natural subsurface aquatic systems is currently unclear. This project sought to establish mechanistic links between trace metal availability and biogeochemical transformations in subsurface systems. Integrated field and laboratory studies of trace metal availability and biogeochemical processes were conducted in riparian wetlands in the Tims Branch watershed at the Savannah River Site, marsh wetlands at Argonne National Laboratory, and the streambed of East Fork Poplar Creek at Oak Ridge National Laboratory, with supplemental work with wetland soils from sites in Missouri and Florida.

54 ENVIRONMENTAL SCIENCES↗

Action Effectiveness Monitoring and Research of Dredged Material Placement at Woodland Islands (Final Report)

Benthic invertebrates play critical ecosystem roles including the breakdown of organic matter, sediment mixing, and nutrient cycling. In the lower Columbia River and estuary, benthic invertebrates provide a foraging resource for threatened and endangered juvenile salmon. Driven by the goal to create low velocity, shallow water, and riparian shrub habitats to benefit juvenile salmon, the USACE placed 237,000 CY of dredged material, resulting in the deposition of 13.5 acres of sand on the off-channel margins at Woodland Islands. The Pacific Northwest National Laboratory (PNNL) designed and implemented an action effectiveness research study to understand how dredged material placement at Woodland Islands affected sediment conditions and benthic invertebrate assemblages. A Before-After-Control-Impact, or BACI, study design was used to evaluate the response of environmental conditions and benthic invertebrates to dredged material placement. The design included one impact site and two control sites. Sampling occurred for two years prior to dredged material placement and two years after. Our study found that spatial variation was a significant factor for both environmental and biological response variables which suggests local conditions are important considerations for mechanisms affecting benthic assemblages. We found that off-channel habitats across all locations sampled were producing benthic invertebrates, many of which are common prey items for juvenile salmon and steelhead—e.g., insects, chironomids, crustaceans, and corophium. There was a significant BACI effect (i.e., an effect at the dredged material placement site, relative to conditions at the control sites) for concentration of carbon and ammonium in sediment, but not for phosphorous concentrations or for percent sand. The estimated abundance for the three invertebrate response variables—total abundance, total chironomid abundance, and total corophium abundance—was significantly lower at the impact site after dredged material placement, compared to the control sites. At Woodland Island, the estimated mean abundance for all invertebrates combined decreased 28% after dredged material placement. Estimated mean abundances of chironomid and corophium decreased by 8% and 88%, respectively. While invertebrate abundances were lower after dredged placement, the composition of benthic invertebrates was similar before and after placement suggesting that as the new habitat feature evolves recolonization will likely follow. These findings provide a foundation for understanding potential benefits and consequences of repurposing dredged material for habitat creation in the LCRE.

54 ENVIRONMENTAL SCIENCES↗

Juvenile Salmon and Their Habitats in the Columbia River Estuary: A Review and Synthesis of Knowledge Development 2000–2025

[This is a 90% discussion draft.] This is the third Synthesis Memorandum funded by the U.S. Army Corps of Engineers and developed for the Columbia Estuary Ecosystem Restoration Program (CEERP) on the topic of habitat restoration in the Columbia River Estuary (CRE) from Bonneville Dam to the river mouth. While the first two were developed by PNNL and NOAA without the benefit of stakeholder participation, for the current memo, two key activities were initiated: (1) review, by the Expert Regional Technical Group (ERTG), of status and trends monitoring and action effectiveness monitoring funded by CEERP, and (2) a workshop including representatives of the Bonneville Power Administration and the U.S. Army Corps of Engineers (the action agencies [AAs]), the National Oceanic and Atmospheric Administration (NOAA), major research agencies contributing to CEERP, and sponsors who implement CEERP restoration actions. A systematic literature review was conducted using ClarivateTM Web of ScienceTM database. The topics of interest for CRE relevant research included salmon ecology, physical processes, and wetland habitats, and therefore required the use of broad search terms. Our final search criteria included a combination of Boolean operators and an approach to combine different sets of search terms. The final search result yielded 669 records. The records were classified by groups and assigned to the relevant disciplinary expert for review. The review identified substantive advances in understanding the provision of salmon habitat functions through spatiotemporally dynamic physical and ecological processes, and the use of CRE habitats by numerous stocks of juvenile salmon. It also uncovered heretofore unincorporated historical documentation of riparian habitats across the CRE. The characterization of the structural components of floodplain habitat including plant associations and channel networks has advanced considerably, together with the understanding of seasonal changes and long-term trends. The relative influence of salmon-habitat location in the CRE as compared with temporal factors, mainly season, has been well described, which affects the prioritization of restoration. Stressors on the ecosystem and fish, and the drivers of these stressors, have been more carefully elucidated and predictive models are in various stages of development. The vision, aims, and design of restoration projects have advanced together with methods of data collection, analysis, and modeling that have seen substantial improvements. Experiments intended to inform the design of restoration projects are underway or have been completed. An important outstanding area of research that has lagged behind the advances in fundamental understanding of the ecosystem and salmon habitat functions remains the peer-reviewed documentation of the outcomes of restoration for both habitats and fish functions.

estuary↗

RNA-seq and metabolomic analyses of beneficial plant phenol biochemical pathways in red alder

Red alder ( Alnus rubra ) has highly desirable wood, dye pigment, and (traditional) medicinal properties which have been capitalized on for thousands of years, including by Pacific West Coast Native Americans. A rapidly growing tree species native to North American western coastal and riparian regions, it undergoes symbiosis with actinobacterium Frankia via their nitrogen-fixing root nodules. Red alder’s desirable properties are, however, largely attributed to its bioactive plant phenol metabolites, including for plant defense, for its attractive wood and bark coloration, and various beneficial medicinal properties. Integrated transcriptome and metabolome data analyses were carried out using buds, leaves, stems, roots, and root nodules from greenhouse grown red alder saplings with samples collected during different time-points (Spring, Summer, and Fall) of the growing season. Pollen and catkins were collected from field grown mature trees. Overall plant phenol biochemical pathways operative in red alder were determined, with a particular emphasis on potentially identifying candidates for the long unknown gateway entry points to the proanthocyanidin (PA) and ellagitannin metabolic classes, as well as in gaining better understanding of the biochemical basis of diarylheptanoid formation, i.e. that help define red alder’s varied medicinal uses, and its extensive wood and dye usage.

59 BASIC BIOLOGICAL SCIENCES↗

Invertebrate and Plant Community Diversity of an Illinois Corn–Soybean Field with Integrated Shrub Willow Bioenergy Buffers

Perennial bioenergy crop production within intensively managed agricultural landscapes has the potential to improve the sustainability, resiliency, and diversity of these landscapes. Perennial crops are ideal because of their high production potential on marginal lands relative to grain crops (e.g., corn and soybean) and their ability to provide additional ecosystem service benefits. When agricultural landscapes are designed to target specific services, determining the non-targeted services of perennial bioenergy crops can further promote their adoption. This 3-year study addresses this proposition by evaluating the canopy invertebrates and understory plant (non-target crop) communities using bee bowls and point measurement of ground coverage, respectively, within a grain field integrated with shrub willow buffer systems designed for nutrient loss reduction. Greater plant diversity and richness were observed under willow than under grain, resembling that of the surrounding riparian community with more perennial, native species. However, the same relationship did not hold true for invertebrates, with seasonality having a significant influence resulting in similar communities observed in willow and grain plots. The presence of unique plant and invertebrate species in both willow and grain crops as well as foraging pollinators on both crop and non-target crop species highlights the importance of habitat heterogeneity for supporting biodiversity and the potential benefits of buffer bioenergy landscape designs.

09 BIOMASS FUELS↗

Biomass yield potential, feedstock quality, and nutrient removal of perennial buffer strips under continuous zero fertilizer application

Perennial-based buffer strips have been promoted as having the potential for improving ecosystem services from riparian areas while producing biomass as livestock feed or as a bioenergy feedstock. Both biomass production and nutrient removal of buffer strips are substantially influenced by the vegetation types for the multipurpose perennial buffers. In this 2016–2019 study in western Illinois, two perennial cropping systems, including forage crops composed of cool-season grass mixtures (forage system) and bioenergy crops made up of warm-season grass mixtures (bioenergy system), were used to establish buffer strips for assessing biomass production, feedstock quality, nutrient removal, and buffer longevity. Treatments for this study reflecting agronomic practices included (1) two harvests occurring in summer (at anthesis) and fall (after complete senescence) and (2) one harvest in fall for the forage system (two-cut vs. one-cut forage) and (3) one fall harvest for the bioenergy system (one-cut bioenergy). Successively harvesting without any fertilizer input resulted in a yield decline in forage biomass over 3 years by approximately 30 % (6.3 to 4.4 Mg DM ha –1 (dry matter) with a rate of 1.0 Mg ha –1 yr –1 ) in the two-cut forage and by 35 % (4.9 to 3.2 Mg DM ha –1 with a rate of 0.9 Mg ha –1 yr –1 ) in the one-cut forage systems. The feed quality also decreased over the years by showing declined rates of 12.9 (crucial protein), 0.9 (calcium), 0.7 (copper), and 1.3 g kg –1 DM yr –1 (zinc). Empirical models predicted enteric CH 4 emissions from cattle ranged from 225.7 to 242.6 g per cow per day based on the feed nutritive values. In contrast, bioenergy biomass yield increased by 27 % from 4.9 to 6.7 Mg DM ha –1 with a consistent quality (cellulose of ~ 397.9 g kg –1 ; hemicellulose of ~ 299.4 g kg –1 ), corresponding to the increased total theoretical ethanol yield from 1.8 × 10 3 to 2.4 × 10 3 L ha –1 (~ 33 % increase). Annual nutrient removals of N, P, K, Ca, and Mg were significantly higher in the forage systems (e.g., two-cut: 52.6–106.9 kg N ha –1 ; one-cut: 44.5–84.1 kg N ha –1 ) than those in the bioenergy system (e.g., 25.9–34.4 kg N ha –1 ); however, the removal rate declined rapidly over 3 years (e.g., ~ 49 % reduction) as the annual biomass yield declined in the forage systems. This on-farm field study demonstrated the potential of the perennial crop used as buffer strip options for biomass production and buffer sustainability at the edge of the field.

09 BIOMASS FUELS↗

Investigation of the detection and monitoring of forest insect infestations in the Sierra Nevada Mountains of California

The author has identified the following significant results. The detection of insect infestations through the use of ERTS-1 imagery alone is very promising. In the field of features other than insect infestation, it is possible to detect: timber vs. non-timber; timber density in broad categories; lakes, major stream courses, rock outcrops and domes; riparian vegetation, cultivated fields, pasture land, and glaciers.

Hall, R. C.↗

Investigation of the detection and monitoring of forest insect infestation in the Sierra Nevada Mountains of California

The author has identified the following significant results. Results of analysis of ERTS-1 color composites made by NASA from MSS bands 4, 5, and 7, frame #1055-18055 at a scale of 1:1,000,000 indicate that forests damaged by insects can be delineated and mapped from areas with no damage; and at this same scale other details detected include timbered and nontimbered areas, pasture and agricultural land, deserts, lakes, mountain meadows, riparian vegetation, rock domes, old burned areas, and major stream courses. Enlargements from the above to a scale of 1:80,000 have improved detectibility to the point that three degrees of timber mortality can be identified and mapped.

Hall, R. C.↗

Water Resources

Uses of ERTS-1 imagery and data for water resources surveys and management are summarized. Areas discussed are: (1) land use and geology; (2) flood plain and flood inundation mapping; (3) snow cover mapping; (4) glacier observations; (5) data collection systems; (6) surface waters; (7) wetlands mapping; (8) water quality; (9) soil mapping; (10) phreatophyte and riparian vegetation mapping; and (11) evapotranspiration.

Salomonson, V. V.↗

Investigation of the detection and monitoring of forest insect infestations in the Sierra Nevada Mountains of California

The author has identified the following significant results. It is possible to detect all major areas of lodgepole pine defoliated by the needle miner within a given target area. Ground checking and helicopter observations have confirmed that accurate designations have been obtained for the following areas: (1) timbered v.s. non-timbered areas, (2) damaged v.s. undamaged timber areas, (3) lakes, (4) dome shadows which resemble lakes, (5) mountain meadows, (6) pasture land, (7) agricultural land, (8) desert, and (9) riparian vegetation.

Hall, R. C.↗

Social, economic and political factors associated with earth resources observation and information analyses.

Discussion of some of the interest conflicts between ecology and economics that arise, particularly in riparian environments, when a population-increase entailed growth in public service requirements is met by indiscriminate technology applications. Reviewed instances of such conflicts include the aborted cross-Florida barge canal project and the Florida Power and Light Company facility at Turkey point.

Hall, J. J.↗

Dynamics of distribution and density of phreatophytes and other arid-land plant communities

The author has identified the following significant results. Six ERTS-1 images of the Tucson area, Arizona were analyzed to detect seasonal flushes of plant growth. Paired MSS-6 and MSS-5 bulk images were analyzed, using a ratioing technique, on the Electronic Satellite Image Analysis Console at Stanford Research Institute. Because of unique phenology, desert areas, covered only briefly by dense growths of ephemeral plants, are readily discerned. Grassland, evergreen forest, and riparian communities are also uniquely defined by their phenologies. Relatively sterile areas with little or no plant growth are easily discerned as are areas with varying degrees of plant productivity. The ratioing procedure detects plant coverage in excess of a threshold lying between 25% and 50%. The method is flexible and other coverage thresholds can be used.

Turner, R. M.↗

Investigation of the detection and monitoring of forest insect infestations in the Sierra Nevada Mountains of California

The author has identified the following significant results. In earlier reports it has been indicated that it is possible to delineate areas of lodgepole pine timber mortality into three degrees of damage from enlarged ERTS-1 color composites; light, medium, and heavy. It can also be confidently reported that it is now possible to detect all major areas of lodgepole pine defoliated by the needle miner. It has also been confirmed, through ground checking and helicopter observation that previous designation of the following features have been consistently accurate: timbered vs non-timbered areas; timber types; damaged vs undamaged areas; lakes, dome shadows which resemble lakes, mountain meadows, pasture and agricultural land, desert; riparian vegetation; and glaciers.

Hall, R. C.↗

A study to explore the use of orbital remote sensing to determine native arid plant distribution

The author has identified the following significant results. It is possible to determine, from ERTS imagery, native arid plant distribution. Using techniques of multispectral masking and extensive fieldwork, three native vegetation communities were defined and mapped in the Avra Valley study area. A map was made of the Yuma area with the aid of ground truth correlations between areas of desert pavement visible on ERTS images and unique vegetation types. With the exception of the Yuma soil-vegetation correlation phenomena, only very gross differentiations of desert vegetation communities can be made from ERTS data. Vegetation communities with obvious vegetation density differences such as saguaro-paloverde, creosote bush, and riparian vegetation can be separated on the Avra Valley imagery while more similar communities such as creosote bush and saltbush could not be differentiated. It is suggested that large differences in vegetation density are needed before the signatures of two different vegetation types can be differentiated on ERTS imagery. This is due to the relatively insignificant contribution of vegetation to the total radiometric signature of a given desert scene. Where more detailed information concerning the vegetation of arid regions is required, large scale imagery is appropriate.

Mcginnies, W. G.↗

Application of ERTS-1 imagery and underflight photography in the detection and monitoring of forest insect infections in the Sierra Nevada Mountains of California

The author has identified the following significant results. Analysis of ERTS-1 imagery with underflight aerial photo support including U-2, in the Sierra Nevada Mountains of California, indicates promising possibilities of detecting and monitoring forest insect outbreaks visually with some mechanical support utilizing the VP-8 image analyzer. Visually, it is possible at a scale of 1:1,000,000 to discriminate between large areas of damaged and undamaged forests; timbered and non-timbered areas; pasture land and cultivated fields; desert and riparian vegetation. At a scale of 1:80,000 it is possible to distinguish among three classes of tree mortality; defoliated and undefoliated areas; non-host mixed conifers; and mountain meadows, rock domes, lakes and glaciers. Machine tests showed significant differences in image densities among various bands and mortality areas.

Hall, R. C.↗

Drainage basin characteristics from ERTS data

The author has identified the following significant results. ERTS-derived measurements of forests, riparian vegetation, open water, and combined agricultural and urban land use were added to an available matrix of map-derived basin characteristics. The matrix of basin characteristics was correlated with 40 stream flow characteristics by multiple regression techniques. Fifteen out of the 40 equations were improved. If the technique can be transferred to other physiographic regions in the nation, the opportunity exists for a potential annual savings in operations of about $250,000.

Hollyday, E. F.↗

Detection of short-term changes in vegetation cover by use of LANDSAT imagery

The author has identified the following significant results. By using a constant band 6 to band 5 radiance ratio of 1.25, the changing pattern of areas of relatively dense vegetation cover was detected for the semiarid region in the vicinity of Tucson, Arizona. Electronically produced binary thematic masks were used to map areas with dense vegetation. The foliar cover threshold represented by the ratio was not accurately determined but field measurements show that the threshold lies in the range of 10 to 25 percent foliage cover. Montana evergreen forests with constant dense cover were correctly shown to exceed the threshold on all dates. The summer active grassland exceeded the threshold in the summer unless rainfall was insufficient. Desert areas exceeded the threshold during the spring of 1973 following heavy rains; the same areas during the rainless spring of 1974 did not exceed threshold. Irrigated fields, parks, golf courses, and riparian communities were among the habitats most frequently surpassing the threshold.

Turner, R. M.↗