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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,441 records · Page 80
All sourcesNASA NTRSDOE OSTI
DOE OSTI2016

Prospects of zero Schottky barrier height in a graphene-inserted MoS{sub 2}-metal interface

A low Schottky barrier height (SBH) at source/drain contact is essential for achieving high drive current in atomic layer MoS{sub 2}-channel-based field effect transistors. Approaches such as choosing metals with appropriate work functions and chemical doping are employed previously to improve the carrier injection from the contact electrodes to the channel and to mitigate the SBH between the MoS{sub 2} and metal. Recent experiments demonstrate significant SBH reduction when graphene layer is inserted between metal slab (Ti and Ni) and MoS{sub 2}. However, the physical or chemical origin of this phenomenon is not yet clearly understood. In this work, density functional theory simulations are performed, employing pseudopotentials with very high basis sets to get insights of the charge transfer between metal and monolayer MoS{sub 2} through the inserted graphene layer. Our atomistic simulations on 16 different interfaces involving five different metals (Ti, Ag, Ru, Au, and Pt) reveal that (i) such a decrease in SBH is not consistent among various metals, rather an increase in SBH is observed in case of Au and Pt; (ii) unlike MoS{sub 2}-metal interface, the projected dispersion of MoS{sub 2} remains preserved in any MoS{sub 2}-graphene-metal system with shift in the bands on the energy axis. (iii) A proper choice of metal (e.g., Ru) may exhibit ohmic nature in a graphene-inserted MoS{sub 2}-metal contact. These understandings would provide a direction in developing high-performance transistors involving heteroatomic layers as contact electrodes.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2015

Fragment approach to constrained density functional theory calculations using Daubechies wavelets

In a recent paper, we presented a linear scaling Kohn-Sham density functional theory (DFT) code based on Daubechies wavelets, where a minimal set of localized support functions are optimized in situ and therefore adapted to the chemical properties of the molecular system. Thanks to the systematically controllable accuracy of the underlying basis set, this approach is able to provide an optimal contracted basis for a given system: accuracies for ground state energies and atomic forces are of the same quality as an uncontracted, cubic scaling approach. This basis set offers, by construction, a natural subset where the density matrix of the system can be projected. In this paper, we demonstrate the flexibility of this minimal basis formalism in providing a basis set that can be reused as-is, i.e., without reoptimization, for charge-constrained DFT calculations within a fragment approach. Support functions, represented in the underlying wavelet grid, of the template fragments are roto-translated with high numerical precision to the required positions and used as projectors for the charge weight function. We demonstrate the interest of this approach to express highly precise and efficient calculations for preparing diabatic states and for the computational setup of systems in complex environments.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2016

Quaternary phase diagrams of spinel Li$_y\square_{1–y}$Mn$_x$Ni$_{2–x}$O$_4$ and composite cathode voltages for concentration gradient materials

Core-shell coating structures and concentration gradient materials may enhance Li-ion battery performance by integrating advantages of core and shell components without introducing unfavorable problems associated with general coatings. The fundamental thermodynamic properties of concentration gradient composite materials are complex due to the multicomponent nature of the problem. Here, we systematically study the thermodynamics of ordering and phase separation in the quaternary spinel Li$_y\square_{1–y}$Mn$_x$Ni$_{2–x}$O$_4$ ($\square$ means vacancy) system by density functional theory calculations, together with the coupled cluster expansion method with interactions within and between (Li/$\square$) and (Mn/Ni) sublattices. On the basis of coupled cluster expansion interactions and Monte Carlo simulations, we calculate quaternary phase diagrams as a function of temperature as well as voltage profiles of single ordered phases and multiphase composite structures. The phase diagram and voltage results are in good agreement with available experimental observations. We also predict a stable high-voltage ordered compound LiMnNiO 4 , with a very high delithiation voltage of 4.76 V. For the composite (Mn-rich + Ni-rich) cathode materials, the voltage profiles show combinations of plateaus from each component compound. The computational strategy of combining quaternary phase diagrams with voltage calculations provides a pathway to understand and design concentration gradient materials.

36 MATERIALS SCIENCE↗
DOE OSTI2026

Project 2.8: Biological Specimen Repository for the Mayak Project

Curation of the existing specimens, including Standard Operating Procedures: The Southern Urals Biophysics Institute (SUBI) will continue to manage the day-to-day operations of the biorepository, but will have to assume the financial costs of maintaining and purchasing equipment such as freezers; Standard Operating Procedures are already in place for all aspects of the operations, and the Georgetown University team will be available on a voluntary and ad hoc basis to answer any technical questions in the future. Acquisition and tracking of new specimens: SUBI will decide on the collection of new tissues and blood samples in the future, and on what scale, depending on available resources and research needs. The Georgetown University team is willing to provide advice on a voluntary and ad hoc basis. Procedures for receiving and approving specimen requests from users: SUBI can take over this function; Chris Loffredo and other qualified research scientists at Georgetown University would be willing to serve as Tissue Review Committee members on a voluntary and ad hoc basis. Biospecimens remaining at Georgetown University: pursuant to the original terms of the Biospecimen Transfer Agreement between SUBI and Georgetown University, all unused portions of specimens (FFPE blocks, slides, and frozen tissues) will be returned to SUBI at the conclusion of the approved scientific research for which they were transferred. It was anticipated that the return shipment of biospecimens would occur in the fall of 2023. However, at this time, due to international developments, there are no shipping companies who can provide such deliveries to Russia. For now, the biospecimens can remain at Georgetown University where they are stored at the Genomics and Epigenomics Shared Resource. There have not been any storage costs to date, but this could change in the future.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2018

Analysis of the Spectral Stability of the Generalized Runge–Kutta Methods Applied to Initial-Boundary-Value Problems for Equations of the Parabolic Type. I. Explicit Methods

We develop a general algorithm for the analysis the spectral stability of generalized multistage Runge–Kutta methods of various orders of accuracy as applied to the numerical integration with respect to time of an initial-boundary-value problem for the second-order parabolic equation. The expression for the function of spectral stability is obtained in two alternative forms: on the basis of matrix relations and in the determinant form. We study specific realizations of various generalized explicit Runge–Kutta methods and their spectral stability. It is shown that all explicit generalized Runge–Kutta methods possess the property of conditional spectral stability and the property of conditional monotonicity of the numerical solution in time whose violation leads to the appearance of false oscillations of the approximate solution. The stability function for these methods is polynomial. It is shown that the application of two-stage generalized explicit Runge–Kutta methods leads to the appearance of predictor-corrector-type schemes. In the case of nonstationary one-dimensional heat-conduction problem, on the basis of a one-stage generalized Runge–Kutta method, we obtain the classical two-layer conditionally stable explicit finite-difference scheme on a four-point template. It is demonstrated that the five-stage generalized Runge–Kutta–Merson method is characterized by the weakest condition of spectral stability as compared with all investigated explicit generalized Runge–Kutta methods.

42 ENGINEERING↗
DOE OSTI2024

An Orbital Basis Set for Double Photoionization of Atoms and Molecules

The ab initio theoretical treatment of one-photon double photoionization processes has been limited to atoms and diatomic molecules by the challenges posed by large grid-based representations of the double ionized continuum wave function. To provide a path for extensions to polyatomics, an energy-adapted orbital basis approach is demonstrated that reduces the dimensions of such representations and simultaneously allows larger time steps in time-dependent computational descriptions of double ionization. Additionally, an algorithm that exploits the diagonal nature of the two-electron integrals in the grid basis and dramatically accelerates the transformation between grid and orbital representations is presented. Excellent agreement between the present results and benchmark theoretical calculations is found for H – and Be atoms, as well as the hydrogen molecule, including for the triply differential cross sections that relate the angular distribution and energy sharing of all of the particles in the molecular frame.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2015

Ab initio investigation on hydrogen adsorption capability in Zn and Cu-based metal organic frameworks

One of the biggest challenge in material technology for hydrogen storage application is to increase hydrogen uptake in room temperature and pressure. As a class of highly porous material, Metal-Organic Frameworks (MOF) holds great potential with its tunable structure. However, little is known about the effect of metal cluster to its hydrogen storage capability. Investigation on this matter has been carried out carefully on small cluster of Zn and Cu-based MOF using first principles method. The calculation of two distinct building units of MOFs, namely octahedral and paddle-wheel models, have been done with B3LYP density functional method using 6-31G(d,p) and LANL2DZ basis sets. From geometry optimization of Zn-based MOF linked by benzene-dicarboxylate (MOF-5), it is found that hydrogen tends to keep distance from metal cluster group and stays above benzene ring. In the other hand, hydrogen molecule prefers to stay atop of the exposed Cu atom in Cu-based MOF system linked by the same linker group (Cu-bdc). Calculated hydrogen binding enthalpies for Zn and Cu octahedral cages at ZnO{sub 3} sites are 1.64kJ/mol and 2.73kJ/mol respectively, while hydrogen binding enthalpies for Zn and Cu paddle-wheel cages calculated on top of metal atoms are found to be at 6.05kJ/mol and 6.10kJ/mol respectively. Major difference between Zn-MOF-5 and Cu-bdc hydrogen uptake performance might be caused by unsaturated metal sites present in Cu-bdc system and the influence of their geometric structures, although a small difference on binding energy in the type of transition metal used is also observed. The comparison between Zn and Cu-based MOF may contribute to a comprehensive understanding of metal clusters and the importance of selecting best transition metal for design and synthesis of metal-organic frameworks.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2017

Structural basis for selectivity and diversity in angiotensin II receptors

The angiotensin II receptors AT 1 R and AT 2 R serve as key components of the renin–angiotensin–aldosterone system. AT 1 R has a central role in the regulation of blood pressure, but the function of AT 2 R is unclear and it has a variety of reported effects. To identify the mechanisms that underlie the differences in function and ligand selectivity between these receptors, here we report crystal structures of human AT 2 R bound to an AT 2 R-selective ligand and to an AT 1 R/AT 2 R dual ligand, capturing the receptor in an active-like conformation. Unexpectedly, helix VIII was found in a non-canonical position, stabilizing the active-like state, but at the same time preventing the recruitment of G proteins or β-arrestins, in agreement with the lack of signalling responses in standard cellular assays. Structure–activity relationship, docking and mutagenesis studies revealed the crucial interactions for ligand binding and selectivity. Finally, our results thus provide insights into the structural basis of the distinct functions of the angiotensin receptors, and may guide the design of new selective ligands.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Dirac oscillator: An alternative basis for nuclear structure calculations

The isotropic harmonic oscillator supplemented by a strong spin-orbit interaction has been the cornerstone of nuclear structure since its inception more than seven decades ago. In this paper we introduce—or rather re-introduce—the “Dirac oscillator,” a fully relativistic basis that has all the desired attributes of the ordinary harmonic oscillator while naturally incorporating a strong spin-orbit coupling. To assess the power and flexibility of the Dirac oscillator basis in the solution of nuclear structure problems within the framework of covariant density-functional theory. Here, self-consistent calculations of binding energies and ground-state densities for a selected set of doubly magic nuclei are performed using the Dirac oscillator basis and are then compared against results obtained with the often-used Runge-Kutta method. Results obtained using the Dirac oscillator basis reproduce with high accuracy those derived using the Runge-Kutta method and suggest a clear path for a generalization to systems with axial symmetry. Although the harmonic oscillator with spin-orbit corrections has been the staple of the nuclear shell model since the beginning, the Dirac oscillator is practically unknown among the nuclear physics community. In this paper we illustrate the power and flexibility of the Dirac oscillator and suggest extensions to the study of systems without spherical symmetry, as required in constrained calculations of nuclear excitations.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2024

Prediction of Redox Potentials for Ac, Th, and Pa in Aqueous Solution

Density functional theory in conjunction with small core pseudopotentials and the associated basis sets was used to calculate potentials for multiple redox couples, covering a range of oxidation states for Ac (0 to III), Th (0 to IV), and Pa (0 to V) in aqueous solution. Solvation effects were incorporated using a supermolecule-continuum approach, with 30 water molecules representing two solvation shells, and the COSMO and SMD implicit solvation models. The calculated geometries for Ac(III), Th(IV), and Pa(V) were in reasonable agreement with the available experimental data. Using the COSMO model with the B3LYP functional, the calculated redox potentials were within ± 0.2 V from experiment for most redox couples. Several pathways were explored for the Pa(V/IV) redox couple for different forms of Pa(V) and Pa(IV). Most Pa(V/IV) redox couples have very similar potentials, ranging from 0 to -0.4 V up to a pH of 1.4. At pH = 1.4, the potentials shift to values that are more negative than -0.7 V, reflecting the growing unfavorable nature of the redox process at higher pH levels. The calculated values for An(III/II) potentials were consistent with prior estimates and the available experimental data. The predicted redox potentials for An(II/I) were highly negative, as expected. For An(I/0) potentials, Th and Pa exhibited positive values, contrasting with the negative values calculated for Ac. Furthermore, the An +m /An(0) potentials agreed better with the experimental data when using the COSMO solvation model as compared to the SMD model.

Chemical calculations↗
DOE OSTI2015

Structures of Human CCL18, CCL3, and CCL4 Reveal Molecular Determinants for Quaternary Structures and Sensitivity to Insulin-Degrading Enzyme

CC chemokine ligands (CCL) are 8-14 kDa signaling proteins involved in diverse immune functions. While CCLs share similar tertiary structures, oligomerization produces highly diverse quaternary structures that protect chemokines from proteolytic degradation and modulate their functions. CCL18 is closely related to CCL3 and CCL4 with respect to both protein sequence and genomic location, yet CCL18 has distinct biochemical and biophysical properties. Here in this paper, we report a crystal structure of human CCL18 and its oligomerization states in solution based on crystallographic and small angle X-ray scattering (SAXS) analyses. Our data shows that CCL18 adopts an α-helical conformation at its N-terminus that weakens its dimerization, explaining CCL18’s preference for the monomeric state. Multiple contacts between monomers allow CCL18 to reversibly form a unique open-ended oligomer different from those of CCL3, CCL4, and CCL5. Furthermore, these differences hinge on proline 8, which is conserved in CCL3 and CCL4, but is replaced by lysine in human CCL18. Our structural analyses suggest that a proline 8 to alanine mutation stabilizes a type I β-turn at the N-terminus of CCL4 to prevent dimerization but prevents dimers from making key contacts with each other in CCL3. Thus, the P8A mutation induces depolymerization of CCL3 and CCL4 by distinct mechanisms. Finally, we used structural, biochemical, and functional analyses to unravel why insulin-degrading enzyme (IDE) degrades CCL3 and CCL4 but not CCL18. Lastly, our results elucidate the molecular basis for the oligomerization of three closely related CC chemokines and suggest how oligomerization shapes CCL chemokine function.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Structural basis for human NKCC1 inhibition by loop diuretic drugs

Abstract Na + –K + –Cl − cotransporters functions as an anion importers, regulating trans-epithelial chloride secretion, cell volume, and renal salt reabsorption. Loop diuretics, including furosemide, bumetanide, and torsemide, antagonize both NKCC1 and NKCC2, and are first-line medicines for the treatment of edema and hypertension. NKCC1 activation by the molecular crowding sensing WNK kinases is critical if cells are to combat shrinkage during hypertonic stress; however, how phosphorylation accelerates NKCC1 ion transport remains unclear. Here, we present co-structures of phospho-activated NKCC1 bound with furosemide, bumetanide, or torsemide showing that furosemide and bumetanide utilize a carboxyl group to coordinate and co-occlude a K + , whereas torsemide encroaches and expels the K + from the site. We also found that an amino-terminal segment of NKCC1, once phosphorylated, interacts with the carboxyl-terminal domain, and together, they engage with intracellular ion exit and appear to be poised to facilitate rapid ion translocation. Together, these findings enhance our understanding of NKCC-mediated epithelial ion transport and the molecular mechanisms of its inhibition by loop diuretics.

Biochemistry & Molecular Biology↗
DOE OSTI2012

Structural Basis and Sequence Rules for Substrate Recognition by Tankyrase Explain the Basis for Cherubism Disease

The poly(ADP-ribose)polymerases Tankyrase 1/2 (TNKS/TNKS2) catalyze the covalent linkage of ADP-ribose polymer chains onto target proteins, regulating their ubiquitylation, stability, and function. Dysregulation of substrate recognition by Tankyrases underlies the human disease cherubism. Tankyrases recruit specific motifs (often called RxxPDG hexapeptides) in their substrates via an N-terminal region of ankyrin repeats. These ankyrin repeats form five domains termed ankyrin repeat clusters (ARCs), each predicted to bind substrate. Here we report crystal structures of a representative ARC of TNKS2 bound to targeting peptides from six substrates. Using a solution-based peptide library screen, we derive a rule-based consensus for Tankyrase substrates common to four functionally conserved ARCs. This 8-residue consensus allows us to rationalize all known Tankyrase substrates and explains the basis for cherubism-causing mutations in the Tankyrase substrate 3BP2. Structural and sequence information allows us to also predict and validate other Tankyrase targets, including Disc1, Striatin, Fat4, RAD54, BCR, and MERIT40.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2017

Diversity and defense-in-depth analysis for I and C systems of research reactors: A case study on two research reactors - 376

This paper provides the analysis results of the diversity and defense-in-depth (D3) applied to two research reactors designed by the Korea Atomic Energy Research Institute. The D3 assessments for instrumentation and control (I and C) systems of two research reactors are performed according to the guidelines documented in NUREG/CR-6303. The I and C systems are classified into four echelons of defense: control echelon, reactor trip echelon, engineered safety feature (ESF) actuation echelon, and monitoring and indication echelon. The diversity between the echelons of defense is assessed to determine that a single software common cause failure (CCF) does not impair the functions of multiple echelons of defense. In addition, the effects of a software CCF of the reactor protection system on the design basis events of the research reactors are analyzed by assuming that the automated reactor trip and ESF actuation functions of the reactor protection system are inoperable due to the software CCF. From the D3 analyses for the research reactors, it is verified that (1) adequate diversity has been provided, (2) adequate defense-in-depth has been provided, and (3) the displays and manual controls for critical safety functions initiated by operator action are diverse from digital systems used in the automatic portion of the protection system. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗
DOE OSTI2018

On the Choice of a Distributed Basis Set in Calculations of Transition-Dipole Moments in the One-Determinant Approximation

The so-called “asymptotic projection technique” developed in previous papers of the authors is applied to the calculation of electronic transition-dipole moments (TDMs) in the one-determinant approximation between states of the same spin and spatial symmetry. The basic equations of the method and specific features of their application to a TDM calculation are briefly discussed. The attention focusses on the choice of a finite one-particle basis set. For this purpose, two possible algorithms for constructing distributed basis sets are proposed. In the first of them, the construction is based on minimization of the Hartree–Fock energy (E{sub HF}) with respect to nonlinear basis set parameters. In the second case, the parameters are determined by minimizing the functional E = E{sub HF} + E{sub MP2}, which includes the electron correlation through the second order of Møller–Plesset perturbation theory (Е{sub МР2}). On the whole, the results of calculations in both basis sets are in agreement with high-accuracy calculations performed by configuration interaction methods. The basis set adapted for E = E{sub HF} + E{sub MP2} significantly improves the accuracy as compared to the basis set of the first type.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2011

Drain Tank Information for Developing Design Basis of the Preliminary Design

Tokamak Cooling Water System (TCWS) drain tanks (DTs) serve two functions: normal operation and safety operation. Normal DTs are used for regular maintenance operations when draining is necessary. Safety DTs are used to receive the water leaked into the Vacuum Vessel (VV) after an in-vessel loss of coolant accident (LOCA) event. The preliminary design of the DTs shall be based on the information provided by this document. The capacity of the normal DTs is estimated based on the internal volume of in-vessel components [e.g., First Wall/Blanket (FW/BLK) and Divertor (DIV)]; Neutral Beam Injector (NBI) components; and TCWS piping, heat exchangers, electric heaters, pump casing, pressurizers, and valves. Water volumes have been updated based on 2004-design information, changes adopted because of approved Project Change Requests (PCRs), and data verification by US ITER and AREVA Federal Services, the US ITER A and E Company. Two tanks will store water from normal draining operations of the FW/BLK and DIV Primary Heat Transfer Systems (PHTSs). One tank will store water from normal draining operations of the NBI PHTS. The capacity of the safety DTs is based on analysis of a design basis accident: a large leak from in-vessel components. There are two safety DTs that will receive water from a VV LOCA event and drainage from the VV, as needed. In addition, there is one sump tank for the DIV that will be used for collecting drain water from the draining and drying processes and specifically for draining the DIV system as the DIV cassette lines are at a lower elevation than the DT connection point. Information documented in this report must be refined and verified during the preliminary design of the DTs, and there are several aspects to be considered to complete the preliminary design. Input to these design considerations is discussed in this report and includes, but is not limited to, water inventory; operating procedures/maintenance; Failure Modes and Effects Analysis (FMEA); tank layout and dimensions, including design margin; classification under French Nuclear Pressure Directives, Equipements Sous Pression Nucleaires (ESPN); and adaptations for construction.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2020

Optimal Orbital Selection for Full Configuration Interaction (OptOrbFCI): Pursuing the Basis Set Limit under a Budget

Full configuration interaction (FCI) solvers are limited to small basis sets due to their expensive computational costs. An optimal orbital selection for FCI (OptOrbFCI) is proposed to boost the power of existing FCI solvers to pursue the basis set limit under a computational budget. The optimization problem coincides with that of the complete active space SCF method (CASSCF), while OptOrbFCI is algorithmically quite different. OptOrbFCI effectively finds an optimal rotation matrix via solving a constrained optimization problem directly to compress the orbitals of large basis sets to one with a manageable size, conducts FCI calculations only on rotated orbital sets, and produces a variational ground-state energy and its wave function. Coupled with coordinate descent full configuration interaction (CDFCI), we demonstrate the efficiency and accuracy of the method on the carbon dimer and nitrogen dimer under basis sets up to cc-pV5Z. We also benchmark the binding curve of the nitrogen dimer under the cc-pVQZ basis set with 28 selected orbitals, which provide consistently lower ground-state energies than the FCI results under the cc-pVDZ basis set. Furthermore, the dissociation energy in this case is found to be of higher accuracy.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2016

Green functions of currents in the odd-intrinsic parity sector of QCD

The independent operator basis of the most important resonances in the odd-intrinsic parity sector of QCD allows us to construct Lagrangians for corresponding Feynman diagrams of several types of interaction channels of the mesons and resonances. Here, we will discuss all three-point current correlators non-trivial for this sector. We briefly summarize their basic properties and high energy behaviour via the operator product expansion (OPE) framework. We also show that the vector field formalism is not compatible with the OPE, and for this reason the antisymmetric field formalism is a more suitable choice. We also briefly introduce some fundamental phenomological aspects that could be useful in the next studies.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗