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DOE OSTI2022

Fast Particle-Wave Interactions and Alfvén Eigenmodes in JET Tokamak Plasmas

This document serves as the closeout report of DOE Grant Award No. DE-FG02-99ER54563 with project period 1 April 2015 through 31 March 2020. The project comprised the international collaboration between MIT and EU scientists on the JET facility to improve our understanding of the physics of energetic particle-wave interactions by measuring the damping rates of stable Alfvén Eigenmodes (AEs) and unstable energetic particle driven modes. More specifically, this project involved the continued participation of MIT, the Culham Centre for Fusion Energy, the Swiss Plasma Center, and theorists from various European laboratories and from UC Irvine. Past contributions from the University of São Paulo are gratefully acknowledged. The Alfvén Eigenmode Active Diagnostic (AEAD) on JET discharges was successfully upgraded in this period and has extracted physically useful information, in primarily deuterium plasma discharges. It is expected that such experiments would be continued during the DT campaign in CY 2021 to assess the damping rates of similar modes in the presence of alpha particles, a product of fusing burning plasma. Only JET would carry out such experiments in the near term in the world. It is important to note that this collaboration was continued under DOE Grant Award No. DE-SC0014264 from 1 April 2020 through the present. In this grant period, the AEAD was upgraded with a set of individual amplifiers for each of a set of six antennas in two toroidally opposite locations. These new amplifiers allowed targeted selection of the antennas’ toroidal spectrum for AEs of interest with toroidal mode number | n | ≤ 20. The resonant detection and measurement of the damping rates of AEs was obtained from magnetic probes that could be compared with theory and simulations. This is a key topic of investigation for ITER and all other next-step fusion experiments, where such modes will interact with energetic particles produced by fusion reactions (alpha particles), Neutral Beam Injection (NBI) and Ion Cyclotron Resonance Heating (ICRH). The majority of the observations during this period were of Toroidal Alfvén Eigenmodes (TAEs) as these are most commonly observed on JET; a number of measurements were made during dedicated TAE experiments. However, a new set of lower frequency band filters were procured with the goal of studying Geodesic Acoustic Modes (GAMs), Beta (Acoustic) AEs (BAE/BAAEs), and Reverse Shear AEs (RSAEs), also predicted by theory. Commissioning and optimizations were successfully completed in this period, and the diagnostic has been in operation during the more recent JET campaigns. Initial results have been obtained in dedicated TAE experiments and successfully compared to drift-kinetic theory. A wide range of theoretical studies have been undertaken in support of the upcoming JET campaigns experiments. To supplement the ongoing use of ideal MHD codes, such as MISHKA during the studies of TAEs, gyrokinetic simulations of low frequency AEs were performed in collaboration with UC Irvine. The Gyrokinetic Toroidal Code (GTC) was used to determine the structure, frequencies and stability of AEs in JET plasmas. Thus, a solid scientific foundation has been laid for future DT campaigns in JET in the 2021 operation period when the damping rates of relevant modes in the presence of alpha particles could be assessed.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2014

RDS - A systematic approach towards system thermal hydraulics input code development for a comprehensive deterministic safety analysis

Deterministic Safety Analysis (DSA) is one of the mandatory requirements conducted for Nuclear Power Plant licensing process, with the aim of ensuring safety compliance with relevant regulatory acceptance criteria. DSA is a technique whereby a set of conservative deterministic rules and requirements are applied for the design and operation of facilities or activities. Computer codes are normally used to assist in performing all required analysis under DSA. To ensure a comprehensive analysis, the conduct of DSA should follow a systematic approach. One of the methodologies proposed is the Standardized and Consolidated Reference Experimental (and Calculated) Database (SCRED) developed by University of Pisa. Based on this methodology, the use of Reference Data Set (RDS) as a pre-requisite reference document for developing input nodalization was proposed. This paper shall describe the application of RDS with the purpose of assessing its effectiveness. Two RDS documents were developed for an Integral Test Facility of LOBI-MOD2 and associated Test A1-83. Data and information from various reports and drawings were referred in preparing the RDS. The results showed that by developing RDS, it has made possible to consolidate all relevant information in one single document. This is beneficial as it enables preservation of information, promotes quality assurance, allows traceability, facilitates continuous improvement, promotes solving of contradictions and finally assisting in developing thermal hydraulic input regardless of whichever code selected. However, some disadvantages were also recognized such as the need for experience in making engineering judgments, language barrier in accessing foreign information and limitation of resources. Some possible improvements are suggested to overcome these challenges.

42 ENGINEERING↗
DOE OSTI2020

Fission gas diffusion and release for Cr 2 O 3 -doped UO 2 : From the atomic to the engineering scale

Here, the anticipated benefits of large grains in Cr 2 O 3 -doped UO 2 pellets include improved mechanical and fission gas retention properties. To support the assessment of fission gas release (FGR) from doped pellets, the impact of doping on fission gas diffusivity for in-reactor conditions must be understood. In this work, we tackle this issue by informing the fission gas model within the BISON fuel performance code using material models developed at the atomic scale. The investigation of intra-granular fission gas diffusivity in Cr 2 O 3 -doped UO 2 is carried out by adapting a cluster dynamics model that, accounting for UO 2 thermochemistry, is capable of describing Xe diffusion under irradiation in undoped UO 2 as the starting point. Using a thermodynamic analysis, it is shown that in stoichiometric UO 2 with additions of Cr 2 O 3 the oxygen potential is defined by the Cr-Cr 2 O 3 two-phase equilibrium. Using the cluster dynamics model, the predicted Xe diffusivity in doped UO 2 was significantly increased in both the intrinsic and irradiation-enhanced regimes compared to undoped UO 2 as a result of higher concentrations of uranium and oxygen vacancies, respectively. This is a consequence of the more oxidizing conditions at high temperature, and more reducing conditions at low temperature, as a result of doping. Arrhenius functions have been fitted to the cluster dynamics results to enable implementation of the new diffusivities in the BISON fission gas behavior model. BISON simulations were carried out, showing the competing effects of the enlarged grains and the new fission gas diffusivity model, which act to suppress and enhance fission gas release, respectively. The new physics-informed model was validated against in-reactor experimental measurements under normal operation. Additionally, benchmarking was carried out for power ramp conditions. The predicted fission gas release agreed well with the experimental data, showing noticeable improvements over the standard UO 2 model.

36 MATERIALS SCIENCE↗
DOE OSTI2020

Capture and migration of Jupiter and Saturn in mean motion resonance in a gaseous protoplanetary disc

Here, we study the dynamical evolution of Jupiter and Saturn embedded in a gaseous, solar nebula-type disc by means of hydrodynamics simulations with the FARGO2D1D code. We study the evolution for different initial separations of the planets’ orbits, Δa SJ , to investigate whether they become captured in mean motion resonance (MMR) and the direction of the subsequent migration of the planet (inwards or outwards). We also provide an assessment of the planet’s orbital dynamics at different epochs of Saturn’s growth. We find that the evolution of initially compact orbital configurations is dependent on the value of Δa SJ . This implies that an evolution as that proposed in the Grand Tack model depends on the precise initial orbits of Jupiter and Saturn and on the time-scales for their formation. Capture in the 1:2 MMR and inward or (nearly) stalled migration are highly favoured. Within its limits, our work suggests that the reversed migration, associated with the resonance capture of Jupiter and Saturn, may be a low-probability evolutionary scenario, so that other planetary systems with giant planets are not expected to have experienced a Grand Tack-like evolutionary path.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2014

Minibeam radiation therapy for the management of osteosarcomas: A Monte Carlo study

Purpose: Minibeam radiation therapy (MBRT) exploits the well-established tissue-sparing effect provided by the combination of submillimetric field sizes and a spatial fractionation of the dose. The aim of this work is to evaluate the feasibility and potential therapeutic gain of MBRT, in comparison with conventional radiotherapy, for osteosarcoma treatments. Methods: Monte Carlo simulations (PENELOPE/PENEASY code) were used as a method to study the dose distributions resulting from MBRT irradiations of a rat femur and a realistic human femur phantoms. As a figure of merit, peak and valley doses and peak-to-valley dose ratios (PVDR) were assessed. Conversion of absorbed dose to normalized total dose (NTD) was performed in the human case. Several field sizes and irradiation geometries were evaluated. Results: It is feasible to deliver a uniform dose distribution in the target while the healthy tissue benefits from a spatial fractionation of the dose. Very high PVDR values (⩾20) were achieved in the entrance beam path in the rat case. PVDR values ranged from 2 to 9 in the human phantom. NTD{sub 2.0} of 87 Gy might be reached in the tumor in the human femur while the healthy tissues might receive valley NTD{sub 2.0} lower than 20 Gy. The doses in the tumor and healthy tissues might be significantly higher and lower than the ones commonly delivered used in conventional radiotherapy. Conclusions: The obtained dose distributions indicate that a gain in normal tissue sparing might be expected. This would allow the use of higher (and potentially curative) doses in the tumor. Biological experiments are warranted.

61 RADIATION PROTECTION AND DOSIMETRY↗
DOE OSTI2015

Gonadal transcriptomics elucidate patterns of adaptive evolution within marine rockfishes (Sebastes)

Background: The genetic mechanisms of speciation and adaptation in the marine environment are not well understood. The rockfish genus Sebastes provides a unique model system for studying adaptive evolution because of the extensive diversity found within this group, which includes morphology, ecology, and a broad range of life spans. Examples of adaptive radiations within marine ecosystems are considered an anomaly due to the absence of geographical barriers and the presence of gene flow. Using marine rockfishes, we identified signatures of natural selection from transcriptomes developed from gonadal tissue of two rockfish species (Sebastes goodei and S. saxicola). We predicted orthologous transcript pairs, and estimated their distributions of nonsynonymous (Ka) and synonymous (Ks) substitution rates. Results: We identified 144 genes out of 1079 orthologous pairs under positive selection, of which 11 are functionally annotated to reproduction based on gene ontologies (GOs). One orthologous pair of the zona pellucida gene family, which is known for its role in the selection of sperm by oocytes, out of ten was identified to be evolving under positive selection. In addition to our results in the protein coding-regions of transcripts, we found substitution rates in 3’ and 5’ UTRs to be significantly lower than Ks substitution rates implying negative selection in these regions. Conclusions: We were able to identify a series of candidate genes that are useful for the assessment of the critical genes that diverged and are responsible for the radiation within this genus. Genes associated with longevity hold potential for understanding the molecular mechanisms that have contributed to the radiation within this genus.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

Sicopolis-AD: Quick-Start Manual

SICOPOLIS-AD is a version of the ice sheet model SICOPOLIS (originally: www.sicopolis.net) used to produce adjoint sensitivities of chosen control variables. It can be used to assess the sensitivity of some quantity of interest to perturbations in variables that may affect that quantity of interest. For example, it can be used to comprehensively and quantitatively assess exactly how the volume of the Greenland Ice Sheet is sensitive to changes in surface temperature at each point on the ice sheet. This document provides basic startup and troubleshooting methods, as well as some best practices for making changes in the code for the purposes of adjoint production.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

SICOPOLIS-AD: Quick-Start Manual (Revision 0.11)

SICOPOLIS-AD is a version of the ice sheet model SICOPOLIS used to produce adjoint sensitivities of chosen control variables. It can be used to assess the sensitivity of some quantity of interest to perturbations in variables that may affect that quantity of interest. For example, it can be used to comprehensively and quantitatively assess exactly how the volume of the Greenland Ice Sheet is sensitive to changes in surface temperature at each point on the ice sheet. This document provides basic startup and troubleshooting methods, as well as some best practices for making changes in the code for the purposes of adjoint production.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Map Applications to Target Exascale Architecture with Machine-Specific Performance Analysis, Including Challenges and Projections

This Exascale Computing Project (ECP) milestone report summarizes the status of all 30 ECP Applications Development (AD) subprojects at the end of FY20. In October and November of 2020, a comprehensive assessment of AD projects was conducted by the ECP leadership. Reviews occurred virtually between October 27, 2020 and November 12, 2020. The review committee—consisting of the AD lead, deputy, and L3—was tasked with evaluating each subproject’s progress in porting their codes to early exascale architectures considered precursors to the planned exascale machines. This includes characterizing which modules have been ported to multi-accelerator nodes, initial performance analyses, the status of software integration, and a current vision of successes, obstacles, and next steps. As such, this report contains not only an accurate snapshot of each subproject’s current status but also represents an unprecedentedly broad account of experiences in porting large scientific applications to next-generation high-performance computing architectures.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2015

Risk Informed Design and Analysis Criteria for Nuclear Structures

Target performance can be achieved by defining design basis ground motion from results of a probabilistic seismic hazards assessment, and introducing known levels of conservatism in the design above the DBE. ASCE 4, 43, DOE-STD-1020 defined the DBE at 4x10-4 and introduce only slight levels of conservatism in response. ASCE 4, 43, DOE-STD-1020 assume code capacities shoot for about 98% NEP. There is a need to have a uniform target (98% NEP) for code developers (ACI, AISC, etc.) to aim for. In considering strengthening options, one must also consider cost/risk reduction achieved.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2015

Towards application of a neutron cross-section uncertainty propagation capability in the criticality safety methodology - 14434

At the Paul Scherrer Institute (PSI) the methodology for criticality safety evaluations (CSE) used for Swiss applications is focused, following common practice, on establishing an upper subcriticality limit (USL) for the effective neutron multiplication factor (k{sub eff}), based on a statistical evaluation of the obtained validation results in terms of the calculated-to-benchmark k{sub eff} values. Recently, a new computational tool referred to as NUSS (Nuclear data Uncertainty Stochastic Sampling) was developed in order to propagate neutron-nuclear data (ND) uncertainties in calculations with Monte Carlo transport codes in combination with general-purpose ND libraries in ACE format. Thereby, this tool should now allow for a quantification of ND data uncertainties in CSE and to introduce these into the CSE criteria definition. This paper concerns an application of the NUSS methodology for criticality validation studies. Calculated k{sub eff} uncertainty estimations were obtained for the current PSI validation suite including in total 149 critical benchmark configurations for which in-house MCNP(X) models were developed, covering both uranium and mixed uranium-plutonium oxide fuels. The MCNPX-2.7.0 code was used together with the ENDF/B-VII.1 ND library while the ND variance-covariance matrixes (VCM) were taken from both SCALE-6.0 44-group libraries and also from ENDF/B-VII.1 files. Based on the newly obtained information on the uncertainties, a re-assessment of the lower tolerance bound (LTB) for k{sub eff} using the total uncertainties as weighting factors is proposed as means for the present PSI CSE methodology upgrade and some possible directions of further methodology enhancements are discussed next. (authors)

42 ENGINEERING↗
DOE OSTI2020

AniMACCS

AniMACCS is an animation software used in conjunction with MELCOR Accident Consequence Code System (MACCS), which is responsible for estimating the offsite consequences of potential severe accidents at nuclear power plants (NPPs) and of atmospheric releases of radioactive aerosols and gases from other nuclear facilities. MACCS is used to perform probabilistic health and economic consequence assessment of hypothetical releases of radioactive material. AniMACCS utilizes the MACCS output files to generate visual and geographical depictions of the accident consequences. SAND2020-12229 M Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Gallagher, LInda↗
DOE OSTI2018

ADAPT

The purpose of the ADAPT code is to generate Dynamic Event Trees (DET) using a user specified set of simulators. ADAPT can utilize any simulation tool which meets a minimal set of requirements. ADAPT is based on the concept of DET which uses explicit modeling of the deterministic dynamic processes that take place during a nuclear reactor plant system (or other complex system) evolution along with stochastic modeling. When DET are used to model various aspects of Probabilistic Risk Assessment (PRA), all accident progression scenarios starting from an initiating event are considered simultaneously. The DET branching occurs at user specified times and/or when an action is required by the system and/or the operator. These outcomes then decide how the dynamic system variables will evolve in time for each DET branch. Since two different outcomes at a DET branching may lead to completely different paths for system evolution, the next branching for these paths may occur not only at separate times, but can be based on different branching criteria. The computational infrastructure allows for flexibility in ADAPT to link with different system simulation codes, parallel processing of the scenarios under consideration, on-line scenario management (initiation as well as termination), analysis of results, and user friendly graphical capabilities. The ADAPT system is designed for a distributed computing environment; the scheduler can track multiple concurrent branches simultaneously. The scheduler is modularized so that the DET branching strategy can be modified (e.g. biasing towards the worst-case scenario/event). Independent database systems store data from the simulation tasks and the DET structure so that the event tree can be constructed and analyzed later. ADAPT is provided with a user-friendly client which can easily sort through and display the results of an experiment, precluding the need for the user to manually inspect individual simulator runs.

Reynolds, John↗
DOE OSTI2015

Rapid quantification of mutant fitness in diverse bacteria by sequencing randomly bar-coded transposons

Transposon mutagenesis with next-generation sequencing (TnSeq) is a powerful approach to annotate gene function in bacteria, but existing protocols for TnSeq require laborious preparation of every sample before sequencing. Thus, the existing protocols are not amenable to the throughput necessary to identify phenotypes and functions for the majority of genes in diverse bacteria. Here, we present a method, random bar code transposon-site sequencing (RB-TnSeq), which increases the throughput of mutant fitness profiling by incorporating random DNA bar codes into Tn5 and mariner transposons and by using bar code sequencing (BarSeq) to assay mutant fitness. RB-TnSeq can be used with any transposon, and TnSeq is performed once per organism instead of once per sample. Each BarSeq assay requires only a simple PCR, and 48 to 96 samples can be sequenced on one lane of an Illumina HiSeq system. We demonstrate the reproducibility and biological significance of RB-TnSeq with Escherichia coli , Phaeobacter inhibens , Pseudomonas stutzeri , Shewanella amazonensis , and Shewanella oneidensis . To demonstrate the increased throughput of RB-TnSeq, we performed 387 successful genome-wide mutant fitness assays representing 130 different bacterium-carbon source combinations and identified 5,196 genes with significant phenotypes across the five bacteria. In P. inhibens , we used our mutant fitness data to identify genes important for the utilization of diverse carbon substrates, including a putative D-mannose isomerase that is required for mannitol catabolism. RB-TnSeq will enable the cost-effective functional annotation of diverse bacteria using mutant fitness profiling. A large challenge in microbiology is the functional assessment of the millions of uncharacterized genes identified by genome sequencing. Transposon mutagenesis coupled to next-generation sequencing (TnSeq) is a powerful approach to assign phenotypes and functions to genes. However, the current strategies for TnSeq are too laborious to be applied to hundreds of experimental conditions across multiple bacteria. Here, we describe an approach, random bar code transposon-site sequencing (RB-TnSeq), which greatly simplifies the measurement of gene fitness by using bar code sequencing (BarSeq) to monitor the abundance of mutants. We performed 387 genome-wide fitness assays across five bacteria and identified phenotypes for over 5,000 genes. RB-TnSeq can be applied to diverse bacteria and is a powerful tool to annotate uncharacterized genes using phenotype data.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2016

Efficient construction of mock catalogs for baryon acoustic oscillation surveys

Precision measurements of the large scale structure of the Universe require large numbers of high fidelity mock catalogs to accurately assess, and account for, the presence of systematic effects. We introduce and test a scheme for generating mock catalogs rapidly using suitably derated N-body simulations. Our aim is to reproduce the large scale structure and the gross properties of dark matter halos with high accuracy, while sacrificing the details of the halo's internal structure. By adjusting global and local time-steps in an N-body code, we demonstrate that we recover halo masses to better than 0.5% and the power spectrum to better than 1% both in real and redshift space for k =1 h Mpc{sup −1}, while requiring a factor of 4 less CPU time. We also calibrate the redshift spacing of outputs required to generate simulated light cones. We find that outputs separated by Δ z =0.05 allow us to interpolate particle positions and velocities to reproduce the real and redshift space power spectra to better than 1% (out to k =1 h Mpc{sup −1}). We apply these ideas to generate a suite of simulations spanning a range of cosmologies, motivated by the Baryon Oscillation Spectroscopic Survey (BOSS) but broadly applicable to future large scale structure surveys including eBOSS and DESI. As an initial demonstration of the utility of such simulations, we calibrate the shift in the baryonic acoustic oscillation peak position as a function of galaxy bias with higher precision than has been possible so far. This paper also serves to document the simulations, which we make publicly available.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2026

Surrogate modeling of Monte Carlo radiation transport with convolutional neural networks for shielding optimization

Here, we present a machine learning (ML)-based surrogate model using convolutional neural networks (CNN) designed to emulate the attenuation of neutron fields as they pass through various shielding materials. This model can compute the outgoing neutron flux almost instantaneously and achieves reasonable accuracy compared to traditional Monte Carlo (MC)-based codes, which are computationally intensive. This emulator alleviates the complexity of neutron radiation transport through shielding materials by reducing the dimensionality and enables shielding optimization for a known radiation environment. This optimization process, which would have taken an unrealistic timeline due to several complex radiation transport simulations, can now be achieved in minutes, thus increasing computational capabilities in radiation shielding assessment. We demonstrate the applications of this emulator in computing effective dose rates and optimizing shielding solutions for a heavy-ion accelerator facility, such as the Facility for Rare Isotope Beams, where secondary neutrons produced via beam interactions dominate the radiation environment.

accelerator shielding↗
DOE OSTI2020

Enhancement of risk informed validation framework for external hazard scenario

In recent years, the U.S. Nuclear Regulatory Commission (USNRC) and the International Atomic Energy Agency (IAEA) have developed methodologies to assess the vulnerabilities of nuclear plants against site specific extreme hazards. In many cases, advanced simulation tools are being considered to simulate multi-physics, multi-scale phenomena and to evaluate vulnerability of nuclear facilities. The credibility of advanced simulation tools is assessed based on a formal verification, validation, and uncertainty quantification procedure. One of the key limitations in validation is the lack of relevant experimental data at system-level. This limitation leads to a decrease in the confidence of system-level risk predictions. Therefore, a robust validation framework is needed to formalize the confidence in predictive capability of advanced simulation results. Additionally, this study enhances the existing risk informed validation methodology, originally proposed by Kwag et al. [1] and Bodda et al. [2], by developing additional attributes and a new set of validation indicies for a complete and wider applicability of the framework. In this manuscript, the methodology to identify the critical path that leads to the system-level failure is illustrated. The overall validation is checked for completeness and consistency by comparing the critical path for both the system-level simulation and experimental models. The applicability of the code for an intended application is represented in terms of various maturity levels and helps in the process of decision making.

42 ENGINEERING↗
DOE OSTI2022

Potential energy savings benefits and limitations of radiative cooling coatings for U.S. residential buildings

We report radiative coatings are a promising strategy to implement passive cooling that provides an eco-friendly pathway to achieve energy efficiency in buildings. This study investigates the benefits and limitations of implementing radiative coatings on the building envelope, particularly the roof, of residential buildings in the United States. The analysis compares the performance of an ideal radiative coating with broadband surface properties to a realistic radiative coating with diffuse and semitransparent properties. To enhance the net energy efficiency of buildings, we carried out a comprehensive parametric analysis comprising key radiation surface properties to maximize cooling energy savings while minimizing heating energy penalties. A countrywide assessment for 68 locations across the United States showed that net energy savings are a strong function of the climatic and atmospheric conditions. Broadly, southern locations showed high overall energy savings whereas northern locations exhibited high overall energy penalties. Locations in International Energy Conservation Code (IECC) climate zones 1A, 2A, and 2B showed a net annual energy savings above 5%, whereas locations in IECC climate zones 5B, 6B, and 7 showed a net annual energy penalty greater than 3%. The hot and dry climate of Phoenix, Arizona, showed the highest overall energy savings of 426 kWh (6.2%). Additionally, the mathematical correlation reveals that the net energy savings of a location is positive only when its average cooling degree days is greater than 5.5 or its average heating degree days is less than 10.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗