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At least 1,441 records · Page 80

Evaluation of Feruloylated and p -Coumaroylated Arabinosyl Units in Grass Arabinoxylans by Acidolysis in Dioxane/Methanol

We report that the arabinosyl side chains of grass arabinoxylans are partially acylated by p-coumarate (pCA) and ferulate (FA). These aromatic side chains can cross-couple wall polymers resulting in modulation of cell wall physical properties. The determination of p-coumaroylated and feruloylated arabinose units has been the target of analytical efforts with trifluoroacetic acid hydrolysis the standard method to release feruloylated and p-coumaroylated arabinose units from arabinoxylans. Herein, we report on a more robust method to measure these acylated units. Acidolysis of extractive-free grass samples in a dioxane/methanol/aqueous 2 M HCl mixture provided the methyl 5-O-p-coumaroyl- and 5-O-feruloyl-l-arabinofuranoside anomers (pCA-MeAra and FA-MeAra). These conjugates were readily analyzed by liquid chromatography combined with both UV and MS detection. The method revealed the variability of the relative acylation of arabinose units by pCA or FA in grass cell walls. Finally, this methodology will permit delineation of hydroxycinnamate acylation patterns in arabinoxylans.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Regional Heatwave Prediction Using Graph Neural Network and Weather Station Data

Abstract Heatwaves lead to catastrophic consequences on public health and the economy. Accurate and timely predictions of regional heatwaves can improve climate preparedness and foster decision‐making to alleviate the burdens due to climate change. In this paper, we propose a heatwave prediction algorithm based on a novel deep learning model, that is, Graph Neural Network (GNN). This new GNN framework can provide real time warnings of the sudden occurrence of regional heatwaves with high accuracy at lower costs of computation and data collection. In addition, its interpretable structure unravels the spatiotemporal patterns of regional heatwaves and helps to enrich our understanding of the general climate dynamics and the causal influences between locations. The proposed GNN framework can be applied for the detection and prediction of other extreme or compound climate events, which calls for future studies.

54 ENVIRONMENTAL SCIENCES↗

Evidence for climate change in the satellite cloud record

Clouds substantially affect Earth’s energy budget by reflecting solar radiation back to space and by restricting emission of thermal radiation to space 1 . They are perhaps the largest uncertainty in our understanding of climate change, owing to disagreement among climate models and observational datasets over what cloud changes have occurred during recent decades and will occur in response to global warming 2, 3 . This is because observational systems originally designed for monitoring weather have lacked sufficient stability to detect cloud changes reliably over decades unless they have been corrected to remove artefacts 4, 5 . Here we show that several independent, empirically corrected satellite records exhibit large-scale patterns of cloud change between the 1980s and the 2000s that are similar to those produced by model simulations of climate with recent historical external radiative forcing. Observed and simulated cloud change patterns are consistent with poleward retreat of mid-latitude storm tracks, expansion of subtropical dry zones, and increasing height of the highest cloud tops at all latitudes. The primary drivers of these cloud changes appear to be increasing greenhouse gas concentrations and a recovery from volcanic radiative cooling. Here, these results indicate that the cloud changes most consistently predicted by global climate models are currently occurring in nature.

58 GEOSCIENCES↗

Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs

Analysis of the increasing wealth of metagenomic data collected from diverse environments can lead to the discovery of novel branches on the tree of life. Here we analyse 5.2 Tb of metagenomic data collected globally to discover a novel bacterial phylum (' Candidatus Kryptonia') found exclusively in higherature pH-neutral geothermal springs. This lineage had remained hidden as a taxonomic 'blind spot' because of mismatches in the primers commonly used for ribosomal gene surveys. Genome reconstruction from metagenomic data combined with single-cell genomics results in several high-quality genomes representing four genera from the new phylum. Metabolic reconstruction indicates a heterotrophic lifestyle with conspicuous nutritional deficiencies, suggesting the need for metabolic complementarity with other microbes. Co-occurrence patterns identifies a number of putative partners, including an uncultured Armatimonadetes lineage. The discovery of Kryptonia within previously studied geothermal springs underscores the importance of globally sampled metagenomic data in detection of microbial novelty, and highlights the extraordinary diversity of microbial life still awaiting discovery.

54 ENVIRONMENTAL SCIENCES↗

Spectroscopic properties and radiation damage investigation of a diamond based Schottky diode for ion-beam therapy microdosimetry

In this work, a detailed analysis of the properties of a novel microdosimeter based on a synthetic single crystal diamond is reported. Focused ion microbeams were used to investigate the device spectropscopic properties as well as the induced radiation damage effects. A diamond based Schottky diode was fabricated by chemical vapor deposition with a very thin detecting region, about 400 nm thick (approximately 1.4 μm water equivalent thickness), corresponding to the typical size in microdosimetric measurements. A 200 × 200 μm{sup 2} square metallic contact was patterned on the diamond surface by standard photolithography to define the sensitive area. Experimental measurements were carried out at the Ruder Boškovic′ Institute microbeam facility using 4 MeV carbon and 5 MeV silicon ions. Ion beam induced charge maps were employed to characterize the microdosimeter response in terms of its charge collection properties. A stable response with no evidence of polarization or memory effects was observed up to the maximum investigated ion beam flux of about 1.7 × 10{sup 9} ions·cm{sup −2}·s{sup −1}. A homogeneity of the response about 6% was found over the sensitive region with a well-defined confinement of the response within the active area. Tests of the radiation damage effect were performed by selectively irradiating small areas of the device with different ion fluences, up to about 10{sup 12} ions/cm{sup 2}. An exponential decrease of the charge collection efficiency was observed with a characteristic decay constant of about 4.8 MGy and 1 MGy for C and Si ions, respectively. The experimental data were analyzed by means of GEANT4 Monte Carlo simulations. A direct correlation between the diamond damaging effect and the Non Ionizing Energy Loss (NIEL) fraction was found. In particular, an exponential decay of the charge collection efficiency with an exponential decay as a function of NIEL is observed, with a characteristic constant of about 9.3 kGy-NIEL for both carbon and silicon ions.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Repetitive operation of an L-band magnetically insulated transmission line oscillator with metal array cathode

We present the repetitive operation research results of an L-band magnetically insulated transmission line oscillator with metal array cathode (MAC-MILO) in this paper. To ensure a more uniform emission of electrons emitted from the cathode, metal plates with different outer radii and thicknesses are periodically arranged in longitudinal direction on the cathode substrate to act as emitters. The higher order mode depressed MILO (HDMILO) structure is applied to ensure stability of the tube. Comparison experiments are carried out between velvet cathode and MAC MILO driven by a 20 GW/40 Ω/40 ns/20 Hz pulse power system. Experimental results reveal that the MAC has much lower outgassing rate, much longer life time, and higher repetitive stability. The MAC-MILO could work stably with a rep-rate up to 20 Hz at a power level of 550 MW when employing a 350 kV/35 kA electric pulse. The TE{sub 11} mode radiation pattern in the farfield region reveals the tube works steadily on the dominant mode. More than 2000 shots have been tested in repetitive mode without any obvious degradation of the detected microwave parameters.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Use of local noise power spectrum and wavelet analysis in quantitative image quality assurance for EPIDs

Purpose: To investigate the use of local noise power spectrum (NPS) to characterize image noise and wavelet analysis to isolate defective pixels and inter-subpanel flat-fielding artifacts for quantitative quality assurance (QA) of electronic portal imaging devices (EPIDs). Methods: A total of 93 image sets including custom-made bar-pattern images and open exposure images were collected from four iViewGT a-Si EPID systems over three years. Global quantitative metrics such as modulation transform function (MTF), NPS, and detective quantum efficiency (DQE) were computed for each image set. Local NPS was also calculated for individual subpanels by sampling region of interests within each subpanel of the EPID. The 1D NPS, obtained by radially averaging the 2D NPS, was fitted to a power-law function. The r-square value of the linear regression analysis was used as a singular metric to characterize the noise properties of individual subpanels of the EPID. The sensitivity of the local NPS was first compared with the global quantitative metrics using historical image sets. It was then compared with two commonly used commercial QA systems with images collected after applying two different EPID calibration methods (single-level gain and multilevel gain). To detect isolated defective pixels and inter-subpanel flat-fielding artifacts, Haar wavelet transform was applied on the images. Results: Global quantitative metrics including MTF, NPS, and DQE showed little change over the period of data collection. On the contrary, a strong correlation between the local NPS (r-square values) and the variation of the EPID noise condition was observed. The local NPS analysis indicated image quality improvement with the r-square values increased from 0.80 ± 0.03 (before calibration) to 0.85 ± 0.03 (after single-level gain calibration) and to 0.96 ± 0.03 (after multilevel gain calibration), while the commercial QA systems failed to distinguish the image quality improvement between the two calibration methods. With wavelet analysis, defective pixels and inter-subpanel flat-fielding artifacts were clearly identified as spikes after thresholding the inversely transformed images. Conclusions: The proposed local NPS (r-square values) showed superior sensitivity to the noise level variations of individual subpanels compared with global quantitative metrics such as MTF, NPS, and DQE. Wavelet analysis was effective in detecting isolated defective pixels and inter-subpanel flat-fielding artifacts. The proposed methods are promising for the early detection of imaging artifacts of EPIDs.

60 APPLIED LIFE SCIENCES↗

Genetic and Antigenic Characterization of an Expanding H3 Influenza A Virus Clade in U.S. Swine Visualized by Nextstrain

Defining factors that influence spatial and temporal patterns of influenza A virus (IAV) is essential to inform vaccine strain selection and strategies to reduce the spread of potentially zoonotic swine-origin IAV. The relative frequency of detection of the H3 phylogenetic clade 1990.4.a (colloquially known as C-IVA) in U.S. swine declined to 7% in 2017 but increased to 32% in 2019. We conducted phylogenetic and phenotypic analyses to determine putative mechanisms associated with increased detection. We created an implementation of Nextstrain to visualize the emergence, spatial spread, and genetic evolution of H3 IAV in swine, identifying two C-IVA clades that emerged in 2017 and cocirculated in multiple U.S. states. Phylodynamic analysis of the hemagglutinin (HA) gene documented low relative genetic diversity from 2017 to 2019, suggesting clonal expansion. The major H3 C-IVA clade contained an N156H amino acid substitution, but hemagglutination inhibition (HI) assays demonstrated no significant antigenic drift. The minor HA clade was paired with the neuraminidase (NA) clade N2-2002B prior to 2016 but acquired and maintained an N2-2002A in 2016, resulting in a loss of antigenic cross-reactivity between N2-2002B- and -2002A-containing H3N2 strains. The major C-IVA clade viruses acquired a nucleoprotein (NP) of the H1N1pdm09 lineage through reassortment in the replacement of the North American swine-lineage NP. Instead of genetic or antigenic diversity within the C-IVA HA, our data suggest that population immunity to H3 2010.1 along with the antigenic diversity of the NA and the acquisition of the H1N1pdm09 NP gene likely explain the reemergence and transmission of C-IVA H3N2 in swine.

59 BASIC BIOLOGICAL SCIENCES↗

Chimbuko: A Workflow-Level Scalable Performance Trace Analysis Tool

Due to the sheer volume of data it is typically impractical to analyze the detailed performance of an HPC application running at-scale. While conventional small-scale benchmarking and scaling studies are often sufficient for simple applications, many modern workflow-based applications couple multiple elements with competing resource demands and complex inter-communication patterns for which performance cannot easily be studied in isolation and at small scale. This work discusses Chimbuko, a performance analysis framework that provides real-time, in situ anomaly detection. By focusing specifically on performance anomalies and their origin (aka provenance), data volumes are dramatically reduced without losing necessary details. To the best of our knowledge, Chimbuko is the first online, distributed, and scalable workflow-level performance trace analysis framework. We demonstrate the tool's usefulness on Oak Ridge National Laboratory's Summit system.

97 MATHEMATICS AND COMPUTING↗

A Data-driven Phytotechnology Framework for Identification and Remediation of Leached-Metals-Contaminated Soil Near Coal Ash Impoundments

This project developed and evaluated advanced remote sensing and machine learning approaches to identify, monitor, and address environmental contamination associated with coal combustion residual (CCR) impoundments and landfills at coal-fired power plants. In Phase I, historical and multi-temporal Sentinel-2 satellite imagery, groundwater monitoring data, and environmental variables were integrated to detect vegetation stress potentially caused by toxic metal leaching from coal ash disposal sites. Multiple vegetation and biophysical indices were analyzed to determine their effectiveness in identifying abnormal vegetation growth patterns linked to contamination. Results from case studies conducted at coal ash–impacted power plant sites in North Carolina and Virginia demonstrated that satellite-based vegetation monitoring can serve as an effective early indicator of environmental stress associated with metals such as arsenic, cadmium, cobalt, lead, lithium, radium, and thallium.

01 COAL, LIGNITE, AND PEAT↗

Training manuals for nondestructive testing using magnetic particles

Training manuals containing the fundamentals of nondestructive testing using magnetic particle as detection media are used by metal parts inspectors and quality assurance specialists. Magnetic particle testing involves magnetization of the test specimen, application of the magnetic particle and interpretation of the patterns formed.

Source record↗

Change in land use in the Phoenix (1:250,000) Quadrangle, Arizona between 1970 and 1973: ERTS as an aid in a nationwide program for mapping general land use

Changes in land use between 1970 and 1973 in the Phoenix (1:250,000 scale) Quadrangle in Arizona have been mapped using only the images from ERTS-1, tending to verify the utility of a standard land use classification system proposed for use with ERTS images. Types of changes detected have been: (1) new residential development of former cropland and rangeland; (2) new cropland from the desert; and (3) new reservoir fill-up. The seasonal changing of vegetation patterns in ERTS has complemented air photos in delimiting the boundaries of some land use types. ERTS images, in combination with other sources of information, can assist in mapping the generalized land use of the fifty states by the standard 1:250,000 quadrangles. Several states are already working cooperatively in this type of mapping.

Place, J. L.↗

Transverse ageostrophic circulations associated with elevated mixed layers

The nature of the frontogenetically forced transverse ageostrophic circulations connected with elevated mixed layer structure is investigated as a first step toward diagnosing the complex vertical circulation patterns occurring in the vicinity of elevated mixed layers within a severe storm environment. The Sawyer-Eliassen ageostrophic circulation equation is reviewed and applied to the elevated mixed layer detected in the SESAME IV data set at 2100 GMT of May 9, 1979. The results of the ageostrophic circulation diagnosis are confirmed and refined by considering an analytic specification for the elevated mixed layer structure.

Keyser, D.↗

Evidence of auroral plasma cavities at Uranus and Neptune from radio burst observations

Radio bursts originating from the stronger magnetic polar regions of both Uranus and Neptune were detected by the planetary radio astronomy experiment during the Voyager 2 encounters with the planets. It has previously been demonstrated that these bursts are beamed into a broad, hollow emission pattern from their auroral sources. It is now shown that the bursts at both planets also manifest similar detailed patterns, with the waves beamed into two separate and distinct radiation cones at intermediate wave frequencies. This double-cone emission pattern is predicted by relativistic cyclotron resonance theory, and application of this theory to the observed emission pattern yields the plasma density structure within the radio source region. Calculations indicate that at both Uranus and Neptune the plasma-to-cyclotron frequency ratio can drop well below 0.01 within the active region. Such low values indicate that the southern auroral zones at both planets contain an auroral plasma cavity that is similar to that found in earth's nightside auroral zone.

Farrell, W. M.↗

Particle Detectors and Data Analysis for Cusp Transient Features Campaign

On December 3, 1997, a rocket payload (36.152) was launched from Ny Alesund into the dark cusp at 0906:00 U (1206:00 LT) during an interval of southward B(sub Z), and positive B(sub y). Launch occurred during a time interval of northeastward moving auroral forms observed between 0845 and 0945 UT by ground-based meridian scanning photometers. Ground photometric measurements during the flight show that the payload passed over the poleward portion of the most intense 6300 A emissions of the dayside cusp/cleft region. Electrons of energy up to a few hundred eV were detected immediately upon instrument turn-on at an altitude of 205 km and throughout the flight until the payload reached an altitude of approximately 197 km on the downleg. Electron spectra were either quasithermal with peak energies approximately 100 eV or showed evidence of acceleration along the magnetic field line by potentials of 100-200 V. Precipitating ions were observed throughout much of the flight. Their spectra were broadly peaked in energy with the peak energy decreasing from approximately 500 eV to approximately 250 eV as the payload flew approximately westward over the dayside precipitationregion. Structure(spatial or temporal intensity variation) was observed between T + 180 s and T + approximately 400 s. At the rocket altitudes(less than 450km) the ions were observed to be precipitating. During the flight, the DMSPF-13 satellite passed through the all-sky imager field-of-view just poleward of the brightest dayside emissions enabling the identification of plasma sheet and boundary layer regions along the orbit. We thus conclude that particle fluxes detected by the rocket flight were either cusp plasma or boundary layer/mantle plasmajust poleward of the dayside cusp/cleft. Further investigation of the particle characteristics and their relationship to ionospheric convection patterns is continuing.

Sharber, James R.↗

Quantifying Spatial Drought Propagation Potential in North America Using Complex Network Theory

Droughts have a dominant three-dimensional (3-D) spatiotemporal structure typically spanning hundreds of kilometers and often lasting for months to years. Here, we introduced a novel framework to explore the 3-D structure of the evolution of droughts based on network theory concepts. The proposed framework is applied to identify critical source regions responsible for large-scale drought onsets during 1901–2014 for the North American continent using the Standardized Precipitation Evaporation Index (SPEI). We built a spatial network connecting the drought onset timings for the North American continent. Using a spatially weighted network partitioning algorithm, the whole continent is then classified into regional spatial drought networks (RSN), where droughts are more likely to propagate within these regional systems. Finally, a customized network metric was applied to identify locations (source regions) where the drought onsets further propagate to other areas within the regional spatial network. Our results indicated that the West coast, Texas coastal region, and Southeastern Arkansas as major source regions through which atmospheric drought propagates to Western, South Central, and Eastern North America. The formation of drought source regions are due to presence of high pressure ridges and anomalous wind patterns. Furthermore, our results indicate that the drought propagation from these source regions may be due to inadequate moisture transport. The proposed framework can help to develop an early warning detection system for droughts and other spatially extensive extreme events such as heatwaves and floods.

Goutam Konapala↗

Chimbuko: A Workflow-Level Scalable Performance Trace Analysis Tool

ABSTRACT Due to the sheer volume of data it is typically impractical to analyze the detailed performance of an HPC application running at-scale. While conventional small-scale benchmarking and scaling studies are often sufficient for simple applications, many modern workflow-based applications couple multiple elements with competing resource demands and complex inter-communication patterns for which performance cannot easily be studied in isolation and at small scale. This work discusses Chimbuko, a performance analysis framework that provides real-time, in situ anomaly detection. By focusing specifically on performance anomalies and their origin (aka provenance), data volumes are dramatically reduced without losing necessary details. To the best of our knowledge, Chimbuko is the first online, distributed, and scalable workflow-level performance trace analysis framework. We demonstrate the tool's usefulness on Oak Ridge National Laboratory's Summit system.

97 MATHEMATICS AND COMPUTING↗

Corn response to climate stress detected with satellite-based NDVI time series

Corn growth conditions and yield are closely dependent on climate variability. Leaf growth, measured as the leaf area index, can be used to identify changes in crop growth in response to climate stress. This research was conducted to capture patterns of spatial and temporal corn leaf growth under climate stress for the St. Joseph River watershed, in northeastern Indiana. Leaf growth is represented by the Normalized Difference Vegetative Index (NDVI) retrieved from multiple years (2000–2010) of Landsat 5 TM images. By comparing NDVI values for individual image dates with the derived normal curve, the response of crop growth to environmental factors is quantified as NDVI residuals. Regression analysis revealed a significant relationship between yield and NDVI residual during the pre-silking period, indicating that NDVI residuals reflect crop stress in the early growing period that impacts yield. Both the mean NDVI residuals and the percentage of image pixels where corn was under stress (risky pixel rate) are significantly correlated with water stress. Dry weather is prone to hamper potential crop growth, with stress affecting most of the observed corn pixels in the area. Oversupply of rainfall at the end of the growing season was not found to have a measurable effect on crop growth, while above normal precipitation earlier in the growing season reduces the risk of yield loss at the watershed scale. Furthermore, the spatial extent of stress is much lower when precipitation is above normal than under dry conditions, masking the impact of small areas of yield loss at the watershed scale.

47 OTHER INSTRUMENTATION↗