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At least 1,459 records · Page 81

Machine learning force field model for kinetic Monte Carlo simulations of itinerant Ising magnets

Here, we present a scalable machine learning (ML) framework for large-scale kinetic Monte Carlo (kMC) simulations of itinerant electron Ising systems. As the effective interactions between Ising spins in such itinerant magnets are mediated by conducting electrons, the calculation of energy change due to a local spin update requires solving an electronic structure problem. Such repeated electronic structure calculations could be overwhelmingly prohibitive for large systems. Assuming the locality principle, a convolutional neural network (CNN) model is developed to directly predict the effective local field and the corresponding energy change associated with a given spin update based on Ising configuration in a finite neighborhood. As the kernel size of the CNN is fixed at a constant, the model can be directly scalable to kMC simulations of large lattices. Our approach is reminiscent of the ML force field models widely used in first-principles molecular dynamics simulations. Applying our ML framework to a square-lattice double-exchange Ising model, we uncover unusual coarsening of ferromagnetic domains at low temperatures. Our work highlights the potential of ML methods for large-scale modeling of similar itinerant systems with discrete dynamical variables.

machine learning↗

Molecular insights into the specific recognition between the RNA binding domain qRRM2 of hnRNP F and G-tract RNA: A molecular dynamics study

Heterogeneous nuclear ribonucleoprotein F (hnRNP F) controls the expression of various genes through regulating the alternative splicing of pre-mRNAs in the nucleus. It uses three quasi-RNA recognition motifs (qRRMs) to recognize G-tract RNA which contains at least three consecutive guanines. The structures containing qRRMs of hnRNP F in complex with G-tract RNA have been determined by nuclear magnetic resonance (NMR) spectroscopy, shedding light on the recognition mechanism of qRRMs with G-tract RNA. However, knowledge of the recognition details is still lacking. To investigate how qRRMs specifically bind with G-tract RNA and how the mutations of any guanine to an adenine in the G-tract affect the binding, molecular dynamics simulations with binding free energy analysis were performed based on the NMR structure of qRRM2 in complex with G-tract RNA. Simulation results demonstrate that qRRM2 binds strongly with G-tract RNA, but any mutation of the G-tract leads to a drastic reduction of the binding free energy. Further comparisons of the energetic components reveal that van der Waals and non-polar interactions play essential roles in the binding between qRRM2 and G-tract RNA, but the interactions are weakened by the effect of RNA mutations. Structural and dynamical analyses indicate that when qRRM2 binds with G-tract RNA, both qRRM2 and G-tract maintain stabilized structures and dynamics; however, the stability is disrupted by the mutations of the G-tract. These results provide novel insights into the recognition mechanism of qRRM2 with G-tract RNA that are not elucidated by the NMR technique. - Highlights: • qRRM2 has greater binding free energy with G-tract RNA than the mutated RNAs. • Non-polar and van der Waals interactions contribute mainly to the binding free energy. • qRRM2 maintains stabilized structure and dynamics when binding with G-tract RNA. • G-tract adopts stabilized conformation in complex with qRRM2.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

The influence of diameter on the magnetic saturation in Fe 84 Cu 16 /MgO [0 0 1] multilayered islands

The saturation field of circular islands, consisting of Fe 84 Cu 16 [/MgO] 9 Fe 84 Cu 16 multilayers, increases with decreasing diameter of the islands. When the diameter of the islands is below 450 nm the field induced changes are dominated by a coherent rotation of the moment of the Fe 84 Cu 16 layers. For diameters of 2 μm and larger, a signature of domain nucleation and evolution is observed. Here, the changes in the saturation field with diameter of the islands are ascribed to the interplay between interlayer exchange coupling, stray field coupling at the edges and the crystalline anisotropy of the Fe 84 Cu 16 layers.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Detection of ferromagnetic domain wall pinning and depinning with a semiconductor device

We demonstrate the detection of a ferromagnetic domain wall using a nanoscale Hall cross. A narrow permalloy wire is defined lithographically on top of a Hall cross fabricated from an InAs quantum well. The width of the Hall cross (500 nm–1 μm) is similar to the width of the ferromagnetic wire (200–500 nm), and a geometric pinning site is fabricated in the ferromagnetic wire to trap a domain wall within the area of the Hall cross. The devices provide a signal that is often the same order of magnitude as the offset Hall voltage when a domain wall is located above the Hall cross, and may be useful for memory applications. Different geometries for the Hall cross and ferromagnetic wire are tested, and radiofrequency pulses are sent into the wire to demonstrate current driven domain wall motion. Further changes to the Hall bar geometry with respect to the wire geometry are investigated by numerical computation. A large gain in signal is seen for Hall bars only slightly wider than the ferromagnetic wires as compared to those twice as wide, as well as a larger sensitivity to the exact position of the domain wall with respect to the center of the Hall cross.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Molecular basis of P[II] major human rotavirus VP8* domain recognition of histo-blood group antigens

Initial cell attachment of rotavirus (RV) to specific cell surface glycan receptors, which is the essential first step in RV infection, is mediated by the VP8* domain of the spike protein VP4. Recently, human histo-blood group antigens (HBGAs) have been identified as receptors or attachment factors for human RV strains. RV strains in the P[4] and P[8] genotypes of the P[II] genogroup share common recognition of the Lewis b (Le b ) and H type 1 antigens, however, the molecular basis of receptor recognition by the major human P[8] RVs remains unknown due to lack of experimental structural information. Here, we used nuclear magnetic resonance (NMR) spectroscopy-based titration experiments and NMR-derived high ambiguity driven docking (HADDOCK) methods to elucidate the molecular basis for P[8] VP8* recognition of the Leb (LNDFH I) and type 1 HBGAs. We also used X-ray crystallography to determine the molecular details underlying P[6] recognition of H type 1 HBGAs. Unlike P[6]/P[19] VP8*s that recognize H type 1 HBGAs in a binding surface composed of an α-helix and a β-sheet, referred as the “βα binding site”, the P[8] and P[4] VP8*s bind Le b HBGAs in a previously undescribed pocket formed by the edges of two β-sheets, referred to as the “ββ binding site”. Importantly, the P[8] and P[4] VP8*s retain binding capability to non-Le b type 1 HBGAs using the βα binding site. The presence of two distinct binding sites for Le b and non-Le b HBGA glycans in the P[8] and P[4] VP8* domains suggests host-pathogen co-evolution under structural and functional adaptation of RV pathogens to host glycan polymorphisms. Assessment and understanding of the precise impact of this co-evolutionary process in determining RV host ranges and cross-species RV transmission should facilitate improved RV vaccine development and prediction of future RV strain emergence and epidemics.

59 BASIC BIOLOGICAL SCIENCES↗

15 years of spin-echo spectroscopy at SNS-NSE: Looking back and looking forward

High-resolution neutron spin echo (NSE) spectroscopy offers unique insights into the mobility of molecular (sub)structures excited by thermal fluctuations (i.e., Brownian motion) of “soft matter” as polymers in solution and in the melt, in biological matter (e.g., protein motions), membranes, and glasses. The ability to tag substructures using H, D contrast variation to resolve the relevant timescales of dynamics on selected molecular items in liquids, soft matter, and melts is a significant advantage of NSE. Also slow magnetic fluctuations on molecular length scales in the range of nanoseconds, e.g., in spin glasses or topological spin structures, can be accessed. This paper reviews the highlights and peculiarities of the SNS-NSE, based at the pulsed neutron source SNS, during its first 1.5 decades of operation. An outlook and perspectives of research in the domain of high-resolution spectroscopy is given.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Highly polarized light emission by isotropic quantum dots integrated with magnetically aligned segmented nanowires

In this work, we demonstrate a proof-of-concept system for generating highly polarized light from colloidal quantum dots (QDs) coupled with magnetically aligned segmented Au/Ni/Au nanowires (NWs). Optical characterizations reveal that the optimized QD-NW coupled structures emit highly polarized light with an s-to p-polarization (s/p) contrast as high as 15:1 corresponding to a degree of polarization of 0.88. These experimental results are supported by the finite-difference time-domain simulations, which demonstrate the interplay between the inter-NW distance and the degree of polarization.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

A new class of single-phase multiferroics: Bismuth-based layered supercell oxide thin films—Current progress and future perspectives

Multiferroic materials, where ferroelectric and magnetic orders coexist, have ignited substantial research interest due to the achievable manipulation of magnetic orders using external electric fields, a feature that has garnered serious interest for memory storage applications. Nonetheless, naturally occurring single-phase multiferroic materials are scarce, thus constraining options for practical use. Over the last decade, bismuth-based layered supercell (LSC) oxides have emerged as novel candidates for multiferroics, catalyzing extensive investigations in this domain. Additionally, these LSC systems are known for their anisotropic structures and optical properties, making them promising for application in optics such as polarizers, beam splitters, and modulators. This thorough review explores the development and current advancements in multiferroic bismuth-based LSC materials. It covers the diverse nature of LSCs, detailing their microstructure, properties, and the mechanics of self-assembly formation. It also highlights the remarkable multifunctional characteristics of LSC-based nanocomposites, with a particular focus on their applications in electronics and optics. Moreover, this review examines the significant potential of LSCs in practical applications, particularly through their integration onto silicon and flexible substrates via heteroepitaxy and film transfer techniques. Finally, it offers insights into potential future research avenues and the broader implications of these versatile LSC materials.

Materials Science↗

Approach to nonlinear magnetohydrodynamic simulations in stellarator geometry

The capability to model the nonlinear magnetohydrodynamic (MHD) evolution of stellarator plasmas is developed by extending the M3D-C 1 code to allow non-axisymmetric domain geometry. We introduce a set of logical coordinates, in which the computational domain is axisymmetric, to utilize the existing finite-element framework of M3D-C 1 . A C 1 coordinate mapping connects the logical domain to the non-axisymmetric physical domain, where we use the M3D-C 1 extended MHD models essentially without modifications. We present several numerical verifications on the implementation of this approach, including simulations of the heating, destabilization, and equilibration of a stellarator plasma with strongly anisotropic thermal conductivity, and of the relaxation of stellarator equilibria to integrable and non-integrable magnetic field configurations in realistic geometries.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Structural transition kinetics and activated behavior in the superconducting vortex lattice

Using small-angle neutron scattering, we investigated the behavior of a metastable vortex lattice state in MgB 2 as it is driven towards equilibrium by an ac magnetic field. This shows an activated behavior, where the ac field amplitude and cycle count are equivalent to, respectively, an effective “temperature” and “time.” The activation barrier increases as the metastable state is suppressed, corresponding to an aging of the vortex lattice. Furthermore, we find a crossover from a partial to a complete suppression of metastable domains depending on the ac field amplitude, which may empirically be described by a single free parameter. This represents an unconventional kind of collective vortex behavior, not governed by pinning, most likely due to the nucleation and growth of equilibrium vortex lattice domains.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Evolution of Intrinsic and Magnetic Field-Induced Magnetic Anisotropies in Strongly Phase-Separated Manganite Thin Films

Single crystalline thin film (∼ 100 nm) of La{sub 0.18}Pr{sub 0.40}Ca{sub 0.42}MnO{sub 3} is grown on (001) oriented LaAlO{sub 3} substrates and the evolution of anisotropy associated with the supercooling behaviour of the magnetic liquid is studied as a function of temperature and magnetic field. The angle-dependent magnetization measurements ascertain that the easy magnetic axis lies in the plane of the film while the hard axis is along the plane normal. The ratio of the easy and hard axes magnetizations (M{sub ||} and M{sub ⊥}) measured at 10 K, viz., M{sub ||}/M{sub ⊥} (10 K) = 2.6, confirms the strongly anisotropic nature of the film. The easy axis ferromagnetic (FM) transition temperature (T{sub C}) is smaller than that along the hard axis. The giant hysteresis in FCC–FCW M–T, which manifests the magnetic liquid behaviour of the strongly phase-separated manganites is appreciably narrowed along the hard axis. The strain glass state is also less dominant along the easy axis. The analysis of the M–H data brings out that the easy axis remanence (M{sub r||}) shows a nonlinear temperature dependence, while the one corresponding to the hard axis (M{sub r⊥}) shows a nearly linear behaviour. The coercivity (H{sub C}) follows a law of the type H{sub C}(T)=H{sub C}(0)(1−AT{sup b}). The value of exponent b ∼ 0.5 for single-domain particles, but in the present case, the best fit to the experimental data yields the exponent b ≈ 0.25 for both H{sub C||} and H{sub C⊥}. The smaller value of the exponent is attributed to the non-canonical nature of the ferromagnetic state and the associated strongly phase-separated nature of the LPCMO thin film.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Spontaneous Supercrystal Formation During a Strain‐Engineered Metal–Insulator Transition

Abstract Mott metal–insulator transitions possess electronic, magnetic, and structural degrees of freedom promising next‐generation energy‐efficient electronics. A previously unknown, hierarchically ordered, and anisotropic supercrystal state is reported and its intrinsic formation characterized in‐situ during a Mott transition in a Ca 2 RuO 4 thin film. Machine learning‐assisted X‐ray nanodiffraction together with cryogenic electron microscopy reveal multi‐scale periodic domain formation at and below the film transition temperature ( T Film ≈ 200–250 K) and a separate anisotropic spatial structure at and above T Film . Local resistivity measurements imply an intrinsic coupling of the supercrystal orientation to the material's anisotropic conductivity. These findings add a new degree of complexity to the physical understanding of Mott transitions, opening opportunities for designing materials with tunable electronic properties.

Gorobtsov, Oleg Yu.↗

The non-uniform early structural response of globular proteins to cold denaturing conditions: A case study with Yfh1

The mechanism of cold denaturation in proteins is often incompletely understood due to limitations in accessing the denatured states at extremely low temperatures. Using atomistic molecular dynamics simulations, we have compared early (nanosecond timescale) structural and solvation properties of yeast frataxin (Yfh1) at its temperature of maximum stability, 292 K (T{sub s}), and the experimentally observed temperature of complete unfolding, 268 K (T{sub c}). Within the simulated timescales, discernible “global” level structural loss at T{sub c} is correlated with a distinct increase in surface hydration. However, the hydration and the unfolding events do not occur uniformly over the entire protein surface, but are sensitive to local structural propensity and hydrophobicity. Calculated infrared absorption spectra in the amide-I region of the whole protein show a distinct red shift at T{sub c} in comparison to T{sub s}. Domain specific calculations of IR spectra indicate that the red shift primarily arises from the beta strands. This is commensurate with a marked increase in solvent accessible surface area per residue for the beta-sheets at T{sub c}. Detailed analyses of structure and dynamics of hydration water around the hydrophobic residues of the beta-sheets show a more bulk water like behavior at T{sub c} due to preferential disruption of the hydrophobic effects around these domains. Our results indicate that in this protein, the surface exposed beta-sheet domains are more susceptible to cold denaturing conditions, in qualitative agreement with solution NMR experimental results.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Quasi-periodic oscillations in short recurring bursts of magnetars SGR 1806–20 and SGR 1900+14 observed with RXTE

Quasi-periodic oscillations (QPOs) observed in the giant flares of magnetars are of particular interest due to their potential to open up a window into the neutron star interior via neutron star asteroseismology. However, only three giant flares have been observed. We therefore make use of the much larger data set of shorter, less energetic recurrent bursts. Here, we report on a search for QPOs in a large data set of bursts from the two most burst-active magnetars, SGR 1806-20 and SGR 1900+14, observed with Rossi X-ray Timing Explorer. We find a single detection in an averaged periodogram comprising 30 bursts from SGR 1806–20, with a frequency of 57 Hz and a width of 5 Hz, remarkably similar to a giant flare QPO observed from SGR 1900+14. This QPO fits naturally within the framework of global magneto-elastic torsional oscillations employed to explain giant flare QPOs. Additionally, we uncover a limit on the applicability of Fourier analysis for light curves with low background count rates and strong variability on short timescales. In this regime, standard Fourier methodology and more sophisticated Fourier analyses fail in equal parts by yielding an unacceptably large number of false-positive detections. This problem is not straightforward to solve in the Fourier domain. Instead, we show how simulations of light curves can offer a viable solution for QPO searches in these light curves.

79 ASTRONOMY AND ASTROPHYSICS↗

RASER MRI: Magnetic resonance images formed spontaneously exploiting cooperative nonlinear interaction

The spatial resolution of magnetic resonance imaging (MRI) is limited by the width of Lorentzian point spread functions associated with the transverse relaxation rate 1/T 2 * . Here, we show a different contrast mechanism in MRI by establishing RASER (radio-frequency amplification by stimulated emission of radiation) in imaged media. RASER imaging bursts emerge out of noise and without applying radio-frequency pulses when placing spins with sufficient population inversion in a weak magnetic field gradient. Small local differences in initial population inversion density can create stronger image contrast than conventional MRI. This different contrast mechanism is based on the cooperative nonlinear interaction between all slices. On the other hand, the cooperative nonlinear interaction gives rise to imaging artifacts, such as amplitude distortions and side lobes outside of the imaging domain. Contrast mechanism and artifacts are explored experimentally and predicted by simulations on the basis of a proposed RASER MRI theory.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Topological surface superconductivity in FeSe 0.45 Te 0.55

The engineering of Majorana zero modes in topological superconductors, a paradigm for the realization of topological quantum computing and topology-based devices, has been hampered by the absence of materials with sufficiently large superconducting gaps. Recent experiments, however, have provided enthralling evidence for the existence of topological surface superconductivity in the iron-based superconductor FeSe 0.45 Te 0.55 possessing a full s> ± -wave gap of a few meV. Here, we propose a mechanism for the emergence of topological superconductivity on the surface of FeSe 0.45 Te 0.55 by demonstrating that the interplay between the s ± -wave symmetry of the superconducting gap, surface magnetism, and a Rashba spin–orbit interaction gives rise to robust topological superconducting phases. Moreover, the proposed mechanism explains a series of experimentally observed hallmarks of topological superconductivity, such as the emergence of Majorana zero modes in the center of vortex cores and at the end of line defects, as well as of chiral Majorana edge modes along domain walls. We also propose that the spatial distribution of supercurrents near a domain wall is a characteristic signature measurable via a scanning superconducting quantum interference device that can distinguish between chiral Majorana edge modes and trivial in-gap states.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Magnetization Reversal of Three-Dimensional Nickel Anti-Sphere Arrays

Three-dimensional antisphere arrays (3DAAs) of Ni have been fabricated here using electrochemical deposition into self-assembled polystyrene sphere templates, which offers the advantage of straightforward scalability. Using the first-order reversal curve (FORC) method, the magnetic reversal mechanism is identified from the characteristic features in the FORC distribution. A left-bending boomerang-like feature is observed in the thinnest sample, which transforms to a ridge oriented along the local coercivity H c axis with increasing sample thickness. This transformation identifies a change in the reversal process from an exchange dominated domain-growth reversal to a localized weakly interacting particle-like reversal. Micromagnetic simulations confirm the decrease in domain growth and increase of pinning behaviors as the thickness of the Ni 3DAAs structure increases, providing strong support to the FORC analysis and interpretation.

36 MATERIALS SCIENCE↗

Bistable and Multi-Domain States of α-Fe/(PrDy)(FeCo)B Ferromagnetic Microwires

In this paper, we obtained α-Fe(50 at %)(PrDy)(FeCo)B(48 at %) microwires by extraction of a hanging drop of the (PrDy)(FeCo)B melt in the electron beam. A single microwire with a diameter of 50 μm and a length of 0.8–6 mm and with an amorphous (PrDy)(FeCo)B content of ~48% and a polycrystalline α‑Fe phase of ~52% is shown to have a rectangular narrow magnetic hysteresis loop and, accordingly, a bistable state with a switching field of ~100 Oe. Shortening the wire to ~0.6 mm leads to a sharp deviation from the loop rectangularity and a decrease in the slope of the dependence of magnetization on the field and coercive force to 20 Oe. In the near-surface layers consisting of an amorphous phase (PrDy)(FeCo)B, oriented regions of reverse magnetization are observed. The role of the magnetic dipole interaction in the formation of the magnetic hysteresis loop of chaotic ensembles of microwires with various compositions is discussed.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗