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At least 1,459 records · Page 81

Broad Genomic Sampling Reveals a Smut Pathogenic Ancestry of the Fungal Clade Ustilaginomycotina

Ustilaginomycotina is home to a broad array of fungi including important plant pathogens collectively called smut fungi. Smuts are biotrophs that produce characteristic perennating propagules called teliospores, one of which, Ustilago maydis , is a model genetic organism. Broad exploration of smut biology has been hampered by limited phylogenetic resolution of Ustilaginiomycotina as well as an overall lack of genomic data for members of this subphylum. In this study, we sequenced eight Ustilaginomycotina genomes from previously unrepresented lineages, deciphered ordinal-level phylogenetic relationships for the subphylum, and performed comparative analyses. Unlike other Basidiomycota subphyla, all sampled Ustilaginomycotina genomes are relatively small and compact. Ancestral state reconstruction analyses indicate that teliospore formation was present at the origin of the subphylum. Divergence time estimation dates the divergence of most extant smut fungi after that of grasses (Poaceae). However, we found limited conservation of well-characterized genes related to smut pathogenesis from U. maydis , indicating dissimilar pathogenic mechanisms exist across other smut lineages. The genomes of Malasseziomycetes are highly diverged from the other sampled Ustilaginomycotina, likely due to their unique history as mammal-associated lipophilic yeasts. Despite extensive genomic data, the phylogenetic placement of this class remains ambiguous. Although the sampled Ustilaginomycotina members lack many core enzymes for plant cell wall decomposition and starch catabolism, we identified several novel carbohydrate active enzymes potentially related to pectin breakdown. Finally, ~50% of Ustilaginomycotina species-specific genes are present in previously undersampled and rare lineages, highlighting the importance of exploring fungal diversity as a resource for novel gene discovery.

59 BASIC BIOLOGICAL SCIENCES↗

Comparative and Functional Algal Genomics

Over 100 whole-genome sequences from algae are published or soon to be published. The rapidly increasing availability of these fundamental resources is precipitating a paradigm shift in the way we understand one of the most diverse, complex, and understudied groups of photosynthetic eukaryotes. Genome sequences provide a window into the functional potential of each disparate alga, with phylogenomics and functional genomics as tools for contextualizing and transferring knowledge from reference organisms into less well-characterized systems. Remarkably, over half of the proteins encoded by algal genomes are of unknown function, highlighting the volume of unique functional capabilities yet to be discovered. We provide an overview of publicly available algal genomes, their associated protein inventories, and their quality, with a summary of the statuses of protein function understanding and prediction.

59 BASIC BIOLOGICAL SCIENCES↗

Core Analysis E-Reports Produced for the Southwest Regional Partnership on Carbon Sequestration for Wells 13-10A, 13-14, and 32-8 of the Farnsworth Unit, Texas

The submission is three electronic reports (e-reports) produced by Terra Tek, a former Schlumberger company, for and under the oversight of the Southwest Regional Partnership on Carbon Sequestration (SWP). The SWP designed and implemented a coring and core analysis program in conjunction with the previous field operator Chaparral Energy, L.L.C. The main SWP contacts who oversaw the coring and core analysis program, including geologic core descriptions and sample selection for testing by the Terra Tek, are listed below in the Authors section. The three reports are for Wells 13-10A, 13-14, and 32-8 of the Farnsworth Unit, TX, a site of the SWP's CO2 storage and enhanced oil recovery project. The e-reports include many data types that are not listed in full detail here, but may include: geomechanical, geochemical, and petrophysical measurements; white light and UV core photos; spectral gamma logs on the core; and Heterogeneous Rock Analysis logs. Fracture core review reports are included for Wells 13-14 and 32-8. The three e-reports each have many subfolders with the various types of data in spreadsheets, pdfs, image files, or other formats. The main e-reports for each well are listed by the well name. The sub-folder “E-Report” for each well has a Report.html file, which, when opened, will have hyperlinks to the various data sets and information. The files in the zipped folder will need to be extracted for the Report.html files to work properly. These authors thank Joseph Hall, a geologist formerly of Chaparral Energy, L.L.C., for assistance in designing the coring program, his geologic expertise of the Farnsworth Unit, and his assistance with characterizing the core. Christopher Gillespie, of Terra Tek at the time, managed the myriad geomechanical, geochemical, and petrophysical measurements provided by Terra Tek for this project. The core from which the samples were collected for this project are housed at the Subsurface Data and Core Libraries of the New Mexico Bureau of Geology and Mineral Resources, Socorro, New Mexico, USA. Funding for this project is provided by the U.S. Department of Energy's (DOE) National Energy Technology Laboratory (NETL) through the Southwest Regional Partnership on Carbon Sequestration (SWP) under Award No. DE-FC26-05NT42591. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525. These e-reports describe objective technical results and analysis. Any subjective views or opinions that might be expressed in the reports do not necessarily represent the views of the US Department of Energy or the United States Government.

Caprock↗

Real-Time Automated Health Information Technology Hazard Detection

The objective of this project is to develop an automated surveillance tool that will help the US Department of Veterans Affairs (VA) to detect potential hazards in health information technology (HIT) systems. To achieve this objective, Oak Ridge National Laboratory (ORNL) researchers have developed computational methods and a surveillance tool that will detect safety concerns and identify opportunities to improve HIT and safety within the VA system using Corporate Data Warehouse (CDW) data. This work is limited to the safe operation and safe use of HIT. It does not address the use of HIT to make health care safer. This project leveraged ORNL expertise in computational sciences and its computing resources accordingly.This report documents the FY 2019 accomplishments on this project. There were three major tasks. The first task developed data extraction approaches, which helped provide a better overall understanding of the important data elements in CDW. The outputs of this task served as inputs into the second task, which is the hazard detection and characterization task. This second task involved development of three methods that can be categorized into probabilistic model, event-based hazards detection, and system-based reliability performance evaluation. The third task dealt with the design, development, and demonstration of the automated surveillance tool. The tool currently resides in ORNL’s Private Health Information enclave at Oak Ridge, Tennessee, and operates on the VA’s CDW data. The developed capabilities and tool have been tested on CDW data from different clinical domains including Consult, Radiology, Laboratory, and Medication.

97 MATHEMATICS AND COMPUTING↗

The Multi-Sensor Aerosol Products Sampling System (MAPSS) for Integrated Analysis of Satellite Retrieval Uncertainties

Among the known atmospheric constituents, aerosols represent the greatest uncertainty in climate research. Although satellite-based aerosol retrieval has practically become routine, especially during the last decade, there is often disagreement between similar aerosol parameters retrieved from different sensors, leaving users confused as to which sensors to trust for answering important science questions about the distribution, properties, and impacts of aerosols. As long as there is no consensus and the inconsistencies are not well characterized and understood ', there will be no way of developing reliable climate data records from satellite aerosol measurements. Fortunately, the most globally representative well-calibrated ground-based aerosol measurements corresponding to the satellite-retrieved products are available from the Aerosol Robotic Network (AERONET). To adequately utilize the advantages offered by this vital resource,., an online Multi-sensor Aerosol Products Sampling System (MAPSS) was recently developed. The aim of MAPSS is to facilitate detailed comparative analysis of satellite aerosol measurements from different sensors (Terra-MODIS, Aqua-MODIS, Terra-MISR, Aura-OMI, Parasol-POLDER, and Calipso-CALIOP) based on the collocation of these data products over AERONET stations. In this presentation, we will describe the strategy of the MAPSS system, its potential advantages for the aerosol community, and the preliminary results of an integrated comparative uncertainty analysis of aerosol products from multiple satellite sensors.

Ichoku, Charles↗

Toward a Coherent Detailed Evaluation of Aerosol Data Products from Multiple Satellite Sensors

Atmospheric aerosols represent one of the greatest uncertainties in climate research. Although satellite-based aerosol retrieval has practically become routine, especially during the last decade, there is often disagreement between similar aerosol parameters retrieved from different sensors, leaving users confused as to which sensors to trust for answering important science questions about the distribution, properties, and impacts of aerosols. As long as there is no consensus and the inconsistencies are not well characterized and understood, there will be no way of developing reliable climate data records from satellite aerosol measurements. Fortunately, the most globally representative well-calibrated ground-based aerosol measurements corresponding to the satellite-retrieved products are available from the Aerosol Robotic Network (AERONET). To adequately utilize the advantages offered by this vital resource, an online Multi-sensor Aerosol Products Sampling System (MAPSS) was recently developed. The aim of MAPSS is to facilitate detailed comparative analysis of satellite aerosol measurements from different sensors (Terra-MODIS, Aqua-MODIS, TerraMISR, Aura-OMI, Parasol-POLDER, and Calipso-CALIOP) based on the collocation of these data products over AERONET stations. In this presentation, we will describe the strategy of the MA~SS system, its potential advantages for the aerosol community, and the preliminary results of an integrated comparative uncertainly analysis of aerosol products from multiple satellite sensors.

Ichoku, Charles↗

Inventory and monitoring of natural vegetation and related resources in an arid environment: A comprehensive evaluation of ERTS-1 imagery

The author has identified the following significant results. A vegetation classification, with 31 types and compatible with remote sensing applications, was developed for the test site. Terrain features can be used to discriminate vegetation types. Elevation and macrorelief interpretations were successful on ERTS photos, although for macrorelief, high sun angle stereoscopic interpretations were better than low sun angle monoscopic interpretations. Using spectral reflectivity, several vegetation types were characterized in terms of patterns of signature change. ERTS MSS digital data were used to discriminate vegetation classes at the association level and at the alliance level when image contrasts were high or low, respectively. An imagery comparison technique was developed to test image complexity and image groupability. In two stage sampling of vegetation types, ERTS plus high altitude photos were highly satisfactory for estimating kind and extent of types present, and for providing a mapping base.

Schrumpf, B. J.↗

Learning Provably Stable Local Volt/Var Controllers for Efficient Network Operation

Here this paper develops a data-driven framework to synthesize local Volt/Var control strategies for distributed energy resources (DERs) in power distribution grids (DGs). Aiming to improve DG operational efficiency, as quantified by a generic optimal reactive power flow (ORPF) problem, we propose a two-stage approach. The first stage involves learning the manifold of optimal operating points determined by an ORPF instance. To synthesize local Volt/Var controllers, the learning task is partitioned into learning local surrogates (one per DER) of the optimal manifold with voltage input and reactive power output. Since these surrogates characterize efficient DG operating points, in the second stage, we develop local control schemes that steer the DG to these operating points. We identify the conditions on the surrogates and control parameters to ensure that the locally acting controllers collectively converge, in a global asymptotic sense, to a DG operating point agreeing with the local surrogates. We use neural networks to model the surrogates and enforce the identified conditions in the training phase. AC power flow simulations on the IEEE 37-bus network empirically bolster the theoretical stability guarantees obtained under linearized power flow assumptions. The tests further highlight the optimality improvement compared to prevalent benchmark methods.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Large-scale Genetic Characterization of a Model Sulfate-Reducing Bacterium

ABSTRACTSulfate-reducing bacteria (SRB) are obligate anaerobes that can couple their growth to the reduction of sulfate. Despite the importance of SRB to global nutrient cycles and their damage to the petroleum industry, our molecular understanding of their physiology remains limited. To systematically provide new insights into SRB biology, we generated a randomly barcoded transposon mutant library in the model SRB Desulfovibrio vulgaris Hildenborough (DvH) and used this genome-wide resource to assay the importance of its genes under a range of metabolic and stress conditions. In addition to defining the essential gene set of DvH, we identified a conditional phenotype for 1,137 non-essential genes. Through examination of these conditional phenotypes, we were able to make a number of novel insights into our molecular understanding of DvH, including how this bacterium synthesizes vitamins. For example, we identified DVU0867 as an atypical L-aspartate decarboxylase required for the synthesis of pantothenic acid, provided the first experimental evidence that biotin synthesis in DvH occurs via a specialized acyl carrier protein and without methyl esters, and demonstrated that the uncharacterized dehydrogenase DVU0826:DVU0827 is necessary for the synthesis of pyridoxal phosphate. In addition, we used the mutant fitness data to identify genes involved in the assimilation of diverse nitrogen sources, and gained insights into the mechanism of inhibition of chlorate and molybdate. Our large-scale fitness dataset and RB-TnSeq mutant library are community-wide resources that can be used to generate further testable hypotheses into the gene functions of this environmentally and industrially important group of bacteria.

Trotter, Valentine V↗

Ground to Space Geoacoustic Characterization during the DAG Experiment

It is therefore of paramount importance to quantify the three dimensional propagation characteristics of infrasound from buried sources. Despite initial success with using an octocopter to quantify ground motion with a seismic hammer (Jones et al., 2015), attempts to capture buried explosion sources using this method have proven very difficult. Even when successful, octocopter-borne sensors suffer from high levels of background noise, have limited flight time due to battery life, and require substantial resources to deploy.

47 OTHER INSTRUMENTATION↗

MIDAS - A microcomputer-based image display and analysis system with full Landsat frame processing capabilities

Image Display and Analysis Systems (MIDAS) developed at NASA/Ames for the analysis of Landsat MSS images is described. The MIDAS computer power and memory, graphics, resource-sharing, expansion and upgrade, environment and maintenance, and software/user-interface requirements are outlined; the implementation hardware (including 32-bit microprocessor, 512K error-correcting RAM, 70 or 140-Mbyte formatted disk drive, 512 x 512 x 24 color frame buffer, and local-area-network transceiver) and applications software (ELAS, CIE, and P-EDITOR) are characterized; and implementation problems, performance data, and costs are examined. Planned improvements in MIDAS hardware and design goals and areas of exploration for MIDAS software are discussed.

Hofman, L. B.↗

The MODE family of facility class experiments

The objective of the Middeck 0-gravity Dynamics Experiment (MODE) is to characterize fundamental 0-g slosh behavior and obtain quantitative data on slosh force and spacecraft response for correlation of the analytical model. The topics are presented in viewgraph form and include the following: space results; STA objectives, requirements, and approach; comparison of ground to orbital data for the baseline configuration; conclusions of orbital testing; flight experiment resources; Middeck Active Control Experiment (MACE); MACE 1-G and 0-G models; and future efforts.

Miller, David W.↗

Groundbreaking Mars Sample Return for Science and Human Exploration

Partnerships between science and human exploration have recent heritage for the Moon (Lunar Precursor Robotics Program, LPRP) and nearearth objects (Exploration Precursor Robotics Program, xPRP). Both programs spent appreciable time and effort determining measurements needed or desired before human missions to these destinations. These measurements may be crucial to human health or spacecraft design, or may be desired to better optimize systems designs such as spacesuits or operations. Both LPRP and xPRP recommended measurements from orbit, by landed missions and by sample return. LPRP conducted the Lunar Reconnaissance Orbiter (LRO) and Lunar Crater Observation and Sensing Satellite (LCROSS) missions, providing high-resolution visible imagery, surface and subsurface temperatures, global topography, mapping of possible water ice deposits, and the biological effects of radiation [1]. LPRP also initiated a landed mission to provide dust and regolith properties, local lighting conditions, assessment of resources, and demonstration of precision landing [2]. This mission was canceled in 2006 due to funding shortfalls. For the Moon, adequate samples of rocks and regolith were returned by the Apollo and Luna programs to conduct needed investigations. Many near-earth asteroids (NEAs) have been observed from the Earth and several have been more extensively characterized by close-flying missions and landings (NEAR, Hayabusa, Rosetta). The current Joint Robotic Precursor Activity program is considering activities such as partnering with the New Frontiers mission OSIRIS-Rex to visit a NEA and return a sample to the Earth. However, a strong consensus of the NEO User Team within xPRP was that a dedicated mission to the asteroid targeted by humans is required [3], ideally including regolith sample return for more extensive characterization and testing on the Earth.

Cohen, Barbara↗

A Vehicle Management End-to-End Testing and Analysis Platform for Validation of Mission and Fault Management Algorithms to Reduce Risk for NASA's Space Launch System

The development of the Space Launch System (SLS) launch vehicle requires cross discipline teams with extensive knowledge of launch vehicle subsystems, information theory, and autonomous algorithms dealing with all operations from pre-launch through on orbit operations. The characteristics of these systems must be matched with the autonomous algorithm monitoring and mitigation capabilities for accurate control and response to abnormal conditions throughout all vehicle mission flight phases, including precipitating safing actions and crew aborts. This presents a large complex systems engineering challenge being addressed in part by focusing on the specific subsystems handling of off-nominal mission and fault tolerance. Using traditional model based system and software engineering design principles from the Unified Modeling Language (UML), the Mission and Fault Management (M&FM) algorithms are crafted and vetted in specialized Integrated Development Teams composed of multiple development disciplines. NASA also has formed an M&FM team for addressing fault management early in the development lifecycle. This team has developed a dedicated Vehicle Management End-to-End Testbed (VMET) that integrates specific M&FM algorithms, specialized nominal and off-nominal test cases, and vendor-supplied physics-based launch vehicle subsystem models. The flexibility of VMET enables thorough testing of the M&FM algorithms by providing configurable suites of both nominal and off-nominal test cases to validate the algorithms utilizing actual subsystem models. The intent is to validate the algorithms and substantiate them with performance baselines for each of the vehicle subsystems in an independent platform exterior to flight software test processes. In any software development process there is inherent risk in the interpretation and implementation of concepts into software through requirements and test processes. Risk reduction is addressed by working with other organizations such as S&MA, Structures and Environments, GNC, Orion, the Crew Office, Flight Operations, and Ground Operations by assessing performance of the M&FM algorithms in terms of their ability to reduce Loss of Mission and Loss of Crew probabilities. In addition, through state machine and diagnostic modeling, analysis efforts investigate a broader suite of failure effects and detection and responses that can be tested in VMET and confirm that responses do not create additional risks or cause undesired states through interactive dynamic effects with other algorithms and systems. VMET further contributes to risk reduction by prototyping and exercising the M&FM algorithms early in their implementation and without any inherent hindrances such as meeting FSW processor scheduling constraints due to their target platform - ARINC 653 partitioned OS, resource limitations, and other factors related to integration with other subsystems not directly involved with M&FM. The plan for VMET encompasses testing the original M&FM algorithms coded in the same C++ language and state machine architectural concepts as that used by Flight Software. This enables the development of performance standards and test cases to characterize the M&FM algorithms and sets a benchmark from which to measure the effectiveness of M&FM algorithms performance in the FSW development and test processes. This paper is outlined in a systematic fashion analogous to a lifecycle process flow for engineering development of algorithms into software and testing. Section I describes the NASA SLS M&FM context, presenting the current infrastructure, leading principles, methods, and participants. Section II defines the testing philosophy of the M&FM algorithms as related to VMET followed by section III, which presents the modeling methods of the algorithms to be tested and validated in VMET. Its details are then further presented in section IV followed by Section V presenting integration, test status, and state analysis. Finally, section VI addresses the summary and forward directions followed by the appendices presenting relevant information on terminology and documentation.

Trevino, Luis↗

Integrating the Social, Hydrological and Ecological Dimensions of Freshwater Health: The Freshwater Health Index

Degradation of freshwater ecosystems and the services they provide is a primary cause of increasing water insecurity, raising the need for integrated solutions to freshwater management. While methods for characterizing the multi-faceted challenges of managing freshwater ecosystems abound, they tend to emphasize either social or ecological dimensions and fall short of being truly integrative. This paper suggests that management for sustainability of freshwater systems needs to consider the linkages between human water uses, freshwater ecosystems and governance. We present a conceptualization of freshwater resources as part of an integrated social-ecological system and propose a set of corresponding indicators to monitor freshwater ecosystem health and to highlight priorities for management. We demonstrate an application of this new framework -the Freshwater Health Index (FHI) - in the Dongjiang River Basin in southern China, where stakeholders are addressing multiple and conflicting freshwater demands. By combining empirical and modeled datasets with surveys to gauge stakeholders' preferences and elicit expert information about governance mechanisms, the FHI helps stakeholders understand the status of freshwater ecosystems in their basin, how ecosystems are being manipulated to enhance or decrease water-related services, and how well the existing water re-source management regime is equipped to govern these dynamics over time. This framework helps to operationalize a truly integrated approach to water resource management by recognizing the interplay between governance, stakeholders, freshwater ecosystems and the services they provide

ecosystem services↗

Play Fairway Analysis Retrospective GeoRePORTs

NREL, as part of the Play Fairway Analysis (PFA) Retrospective and with assistance from PFA PIs, completed GeoRePORTs for the sites identified in Phases 1&2 of the DOE PFA projects. The GeoRePORT (geothermal resource portfolio optimization and reporting technique) uses two factors to describe a specific project; grade and project readiness level. Grade describes the quality or potential of a project while project readiness level shows the progress of research and development. The categories that factor into the total grades and readiness levels are Geological, Technical, and Socio-Economic.

15 GEOTHERMAL ENERGY↗

From model to crop: functional characterization of SPL8 in M. truncatula led to genetic improvement of biomass yield and abiotic stress tolerance in alfalfa

Biomass yield, salt tolerance and drought tolerance are important targets for alfalfa ( Medicago sativa L. ) improvement. Medicago truncatula has been developed into a model plant for alfalfa and other legumes. By screening a Tnt1 retrotransposon-tagged M. truncatula mutant population, we identified three mutants with enhanced branching. Branch development determines shoot architecture which affects important plant functions such as light acquisition, resource use and ultimately impacts biomass production. Molecular analyses revealed that the mutations were caused by Tnt1 insertions in the SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8 (SPL8) gene. The M. truncatula spl8 mutants had increased biomass yield, while overexpression of SPL8 in M. truncatula suppressed branching and reduced biomass yield. Scanning electron microscopy (SEM) analysis showed that SPL8 inhibited branching by directly suppressing axillary bud formation. Based on the M. truncatula SPL8 sequence, alfalfa SPL8 (MsSPL8) was cloned and transgenic alfalfa plants were produced. MsSPL8 down-regulated or up-regulated alfalfa plants exhibited similar phenotypes to the M. truncatula mutants or overexpression lines, respectively. Specifically, the MsSPL8 down-regulated alfalfa plants showed up to 43% increase in biomass yield in the first harvest. The impact was even more prominent in the second harvest, with up to 86% increase in biomass production compared to the control. Furthermore, downregulation of MsSPL8 led to enhanced salt and drought tolerance in transgenic alfalfa. Results from this research offer a valuable approach to simultaneously improve biomass production and abiotic stress tolerance in legumes.

09 BIOMASS FUELS↗

Seismoelectric Effects for Geothermal Resources Assessment and Monitoring (SEE4GEO)

The seismoelectric effects technique (SEE) is a new and innovative approach for geothermal subsurface imaging and monitoring at reservoir scale. The objective of this project is to assess SEE in terms of data acquisition, cost and quality, and to determine its capability in comparison with classical imaging and monitoring techniques, particularly decoupled seismic and electromagnetic methods. This will be achieved by (1) development of a fast, true 3D numerical package, handling SEE imaging and subsurface properties characterization, including resistivity and permeability, (2) laboratory experiments performed in a controlled environment to define optimal deployment design, data quality, and inform field deployment, and (3) field surveys to ultimately test and draw lessons for practical use of SEE technology. There is a relatively extensive body of work in the literature on SEE, and members of this consortium have been involved in theoretical and numerical development of SEE modeling as well as laboratory experiments. Nevertheless, to our knowledge few, if any, documented efforts have been specifically targeting the use of SEE for geothermal subsurface imaging and monitoring. The strength and originality of our proposal rely on an integrated approach leveraging numerical, laboratory and field experiments, to properly document the practical use of SEE. Through this process, SEE in-hand technology for the geothermal industry will be able to progress from a TRL 1 to TRL 3.

58 GEOSCIENCES↗