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At least 1,477 records · Page 82

The impacts of rising vapour pressure deficit in natural and managed ecosystems

Abstract An exponential rise in the atmospheric vapour pressure deficit (VPD) is among the most consequential impacts of climate change in terrestrial ecosystems. Rising VPD has negative and cascading effects on nearly all aspects of plant function including photosynthesis, water status, growth and survival. These responses are exacerbated by land–atmosphere interactions that couple VPD to soil water and govern the evolution of drought, affecting a range of ecosystem services including carbon uptake, biodiversity, the provisioning of water resources and crop yields. However, despite the global nature of this phenomenon, research on how to incorporate these impacts into resilient management regimes is largely in its infancy, due in part to the entanglement of VPD trends with those of other co‐evolving climate drivers. Here, we review the mechanistic bases of VPD impacts at a range of spatial scales, paying particular attention to the independent and interactive influence of VPD in the context of other environmental changes. We then evaluate the consequences of these impacts within key management contexts, including water resources, croplands, wildfire risk mitigation and management of natural grasslands and forests. We conclude with recommendations describing how management regimes could be altered to mitigate the otherwise highly deleterious consequences of rising VPD.

54 ENVIRONMENTAL SCIENCES↗

A tissue‐resolved, network‐based transcriptomic framework for abiotic stress responses in sorghum

Developing climate‐resilient crops requires a detailed understanding of stress‐induced gene expression dynamics, as maladaptive responses can compromise their productivity and survival. Sorghum, a globally important cereal with exceptional tolerance to multiple abiotic stresses, provides a powerful system for investigating these dynamics. However, how stress type, tissue specificity, and temporal progression jointly shape transcriptomic responses in crops remains poorly understood. Here, we present a comparative, time‐resolved transcriptomic atlas of sorghum responses to drought, heat, and salinity stress across shoot and root tissues. Integrative analyses revealed that tissue specificity is the dominant determinant of abiotic stress‐induced gene reprogramming across all three stresses. Building on these global comparisons, we focused on heat stress, as it elicited the most coherent and pronounced transcriptional and regulatory responses, enabling deeper network‐level interrogation. Co‐expression network analysis identified tissue‐specific modules enriched for phytohormone‐responsive genes, while gene regulatory network (GRN) mapping and cistrome analyses uncovered transcription factors (TFs) controlling key hub genes within these modules. Together, this study provides a foundational transcriptomic and network‐based resource for dissecting the regulatory architecture of abiotic stress responses in sorghum and offers prioritized candidates for future functional validation and engineering of climate‐resilient crops.

abiotic stress↗

Trends in atmospheric patterns conducive to seasonal precipitation and temperature extremes in California

Recent evidence suggests that changes in atmospheric circulation have altered the probability of extreme climate events in the Northern Hemisphere. We investigate northeastern Pacific atmospheric circulation patterns that have historically (1949–2015) been associated with cool-season (October-May) precipitation and temperature extremes in California. We identify changes in occurrence of atmospheric circulation patterns by measuring the similarity of the cool-season atmospheric configuration that occurred in each year of the 1949–2015 period with the configuration that occurred during each of the five driest, wettest, warmest, and coolest years. Our analysis detects statistically significant changes in the occurrence of atmospheric patterns associated with seasonal precipitation and temperature extremes. We also find a robust increase in the magnitude and subseasonal persistence of the cool-season West Coast ridge, resulting in an amplification of the background state. Changes in both seasonal mean and extreme event configurations appear to be caused by a combination of spatially nonuniform thermal expansion of the atmosphere and reinforcing trends in the pattern of sea level pressure. In particular, both thermal expansion and sea level pressure trends contribute to a notable increase in anomalous northeastern Pacific ridging patterns similar to that observed during the 2012–2015 California drought. Collectively, our empirical findings suggest that the frequency of atmospheric conditions like those during California’s most severely dry and hot years has increased in recent decades, but not necessarily at the expense of patterns associated with extremely wet years.

54 ENVIRONMENTAL SCIENCES↗

Opportunities for Joint Water–Energy Management: Sensitivity of the 2010 Western U.S. Electricity Grid Operations to Climate Oscillations

The 2016 SECURE Water Act report’s natural water availability benchmark, combined with the 2010 level of water demand from an integrated assessment model, is used as input to drive a large-scale water management model. The regulated flow at hydropower plants and thermoelectric plants in the Western U.S. electricity grid (WECC) is translated into potential hydropower generation and generation capacity constraints. The impact on reliability (unserved energy, reserve margin) and cost (production cost, carbon emissions) of water constraints on 2010-level WECC power system operations is assessed using an electricity production cost model (PCM). Use of the PCM reveals the changes in generation dispatch that reflect the inter-regional interdependencies in water-constrained generation and the ability to use other generation resources to meet all electricity loads in the WECC. August grid operational benchmarks show a range of sensitivity in production cost (-8 to +11%) and carbon emissions (-7 to 11%). The reference reserve margin threshold of 15% above peak load is maintained in the scenarios analyzed, but in 5 out of 55 years unserved energy is observed when normal operations are maintained. There is 1 chance in 10 that a year will demonstrate unserved energy in August, which defines the system’s historical performance threshold to support impact, vulnerability, and adaptation analysis. For seasonal and longer term planning, i.e., multi-year drought, we demonstrate how the Water Scarcity Grid Impact Factor and climate oscillations (ENSO, PDO) can be used to plan for joint water-electricity management to maintain grid reliability.

adaptation↗

Causes and Implications of Extreme Atmospheric Moisture Demand during the Record-Breaking 2011 Wildfire Season in the Southwestern United States

In 2011, exceptionally low atmospheric moisture content combined with moderately high temperatures to produce a record-high vapor pressure deficit (VPD) in the southwestern United States (SW). These conditions combined with record-low cold-season precipitation to cause widespread drought and extreme wildfires. Although interannual VPD variability is generally dominated by temperature, high VPD in 2011 was also driven by a lack of atmospheric moisture. The May–July 2011 dewpoint in the SW was 4.5 standard deviations below the long-term mean. Lack of atmospheric moisture was promoted by already very dry soils and amplified by a strong ocean-to-continent sea level pressure gradient and upper-level convergence that drove dry northerly winds and subsidence upwind of and over the SW. Subsidence drove divergence of rapid and dry surface winds over the SW, suppressing southerly moisture imports and removing moisture from already dry soils. Model projections developed for the fifth phase of the Coupled Model Intercomparison Project (CMIP5) suggest that by the 2050s warming trends will cause mean warm-season VPD to be comparable to the record-high VPD observed in 2011. CMIP5 projections also suggest increased interannual variability of VPD, independent of trends in background mean levels, as a result of increased variability of dewpoint, temperature, vapor pressure, and saturation vapor pressure. Increased variability in VPD translates to increased probability of 2011-type VPD anomalies, which would be superimposed on ever-greater background VPD levels. Although temperature will continue to be the primary driver of interannual VPD variability, 2011 served as an important reminder that atmospheric moisture content can also drive impactful VPD anomalies.

54 ENVIRONMENTAL SCIENCES↗

El Niño Southern Oscillation (ENSO) Enhances CO 2 Exchange Rates in Freshwater Marsh Ecosystems in the Florida Everglades

This research examines the relationships between El Niño Southern Oscillation (ENSO), water level, precipitation patterns and carbon dioxide (CO 2 ) exchange rates in the freshwater wetland ecosystems of the Florida Everglades. Data was obtained over a 5-year study period (2009–2013) from two freshwater marsh sites located in Everglades National Park that differ in hydrology. At the shorthydroperiod site (Taylor Slough; TS) and the long-hydroperiod site (Shark River Slough; SRS) fluctuations in precipitation patterns occurred with changes in ENSO phase, suggesting that extreme ENSO phases alter Everglades hydrology which is known to have a substantial influence on ecosystem carbon dynamics. Variations in both ENSO phase and annual net CO 2 exchange rates co-occurred with changes in wet and dry season length and intensity. Combined with site-specific seasonality in CO 2 exchanges rates, El Niño and La Niña phases magnified season intensity and CO 2 exchange rates at both sites. At TS, net CO 2 uptake rates were higher in the dry season, whereas SRS had greater rates of carbon sequestration during the wet season. As La Niña phases were concurrent with drought years and extended dry seasons, TS became a greater sink for CO 2 on an annual basis (211 to 2110 g CO 2 m -2 yr -1 ) compared to El Niño and neutral years (25 to 243.5 g CO 2 m -2 yr -1 ). SRS was a small source for CO 2 annually (1.81 to 80 g CO 2 m -2 yr -1 ) except in one exceptionally wet year that was associated with an El Niño phase (216 g CO 2 m -2 yr -1 ). Considering that future climate predictions suggest a higher frequency and intensity in El Nin˜o and La Nin˜a phases, these results indicate that changes in extreme ENSO phases will significantly alter CO 2 dynamics in the Florida Everglades.

54 ENVIRONMENTAL SCIENCES↗

Data from a throughfall exclusion experiment: Fine root dynamics, morphology, chemistry, and AMF colonization across four lowland Panamanian forests

Fine roots regulate forest nutrient, carbon, and water cycling, yet their variation within and among tropical forests remains under-characterized. We quantified root productivity, disappearance, and stocks to 1 m using minirhizotron imaging, and we measured morphology, elemental composition [root carbon (C), root nitrogen (N), root phosphorus (P)], and arbuscular mycorrhizal fungi (AMF) colonization to 20 cm using ingrowth cores and sequential coring. Sampling took place in four distinct lowland Panamanian forests (32 plots; 8 per forest) from 2018 through 2022 under control and throughfall-exclusion (drought) treatments in the Panama Rainforest Changes with Experimental Drying (PARCHED) experiment.The dataset is presented as an Excel workbook with six tabs. The first tab is the data dictionary. Tab S1 contains ingrowth-core production and mortality, morphology and soil moisture. Tab S2 contains sequential-coring standing stocks with associated morphology and soil moisture. Tab S3 contains minirhizotron row data records to 1 m depth, including per-frame root length and diameter, normalized length metrics, and session timing. Tab S4 contains AMF colonization. Tab S5 contains fine-root chemistry at 0–10 cm, reporting %P, %C, %N, and C:N for samples collected via ingrowth cores and sequential-coring standing stocks. CSV mirrors for each tab are provided, and a KML file supplies coordinates for all 32 plots.Key variables span live and dead fine-root biomass (and coarse fractions where applicable), specific root length (SRL) and area (SRA), diameter, root tissue density (RTD), soil moisture, AMF colonization, root %N, %C, %P, and C:N, along with minirhizotron root length and diameter. Depth, season, treatment, and plot/site identifiers are included to support cross-tab integration and analysis from 0–100 cm (minirhizotron) and 0–20 cm (cores).Units are reported in-column and missing values are coded as NA. No special software is required to open or use the files (Excel, CSV, and KML compatible).

54 ENVIRONMENTAL SCIENCES↗

Power Plant Water Risk and Adaptive Measures Database

Project objective was to understand water-related constraints affecting conventional powerplant operations, specifically coal-fired power plants. Of concern were threats related to drought and flood affecting both water supply and ability of plant to discharge wastewater. Also of interest were adaptive measures taken to mitigate identified threats. This spreadsheet contains the responses provided by the power plant operators and owners. Data have been "sanitized" (e.g., random plant ID, binned location and generation capacity information) to ensure anonymity of individual power plants.

Adaptive Measures↗

Review of the WECC EDT phase 2 EIM benefits analysis and results report.

A region-wide Energy Imbalance Market (EIM) was recently proposed by the Western Electricity Coordinating Council (WECC). In order for the Western Area Power Administration (Western) to make more informed decisions regarding its involvement in the EIM, Western asked Argonne National Laboratory (Argonne) to review the EIM benefits study (the October 2011 revision) performed by Energy and Environmental Economics, Inc. (E3). Key components of the E3 analysis made use of results from a study conducted by the National Renewable Energy Laboratory (NREL); therefore, we also reviewed the NREL work. This report examines E3 and NREL methods and models used in the EIM study. Estimating EIM benefits is very challenging because of the complex nature of the Western Interconnection (WI), the variability and uncertainty of renewable energy resources, and the complex decisions and potentially strategic bidding of market participants. Furthermore, methodologies used for some of the more challenging aspects of the EIM have not yet matured. This review is complimentary of several components of the EIM study. Analysts and modelers clearly took great care when conducting detailed simulations of the WI using well-established industry tools under stringent time and budget constraints. However, it is our opinion that the following aspects of the study and the interpretation of model results could be improved upon in future analyses. The hurdle rate methodology used to estimate current market inefficiencies does not directly model the underlying causes of sub-optimal dispatch and power flows. It assumes that differences between historical flows and modeled flows can be attributed solely to market inefficiencies. However, flow differences between model results and historical data can be attributed to numerous simplifying assumptions used in the model and in the input data. We suggest that alternative approaches be explored in order to better estimate the benefits of introducing market structures like the EIM. In addition to more efficient energy transactions in the WI, the EIM would reduce the amount of flexibility reserves needed to accommodate forecast errors associated with variable production from wind and solar energy resources. The modeling approach takes full advantage of variable resource diversity over the entire market footprint, but the projected reduction in flexibility reserves may be overly optimistic. While some reduction would undoubtedly occur, the EIM is only an energy market and would therefore not realize the same reduction in reserves as an ancillary services market. In our opinion the methodology does not adequately capture the impact of transmission constraints on the deployment of flexibility reserves. Estimates of flexibility reserves assume that forecast errors follow a normal distribution. Improved estimates could be obtained by using other probability distributions to estimate up and down reserves to capture the underlying uncertainty of these resources under specific operating conditions. Also, the use of a persistence forecast method for solar is questionable, because solar insolation follows a deterministic pattern dictated by the sun's path through the sky. We suggest a more rigorous method for forecasting solar insolation using the sun's relatively predictable daily pattern at specific locations. The EIM study considered only one scenario for hydropower resources. While this scenario is within the normal range over the WI footprint, it represents a severe drought condition in the Colorado River Basin from which Western schedules power. Given hydropower's prominent role in the WI, we recommend simulating a range of hydropower conditions since the relationship between water availability and WI dispatch costs is nonlinear. Also, the representation of specific operational constraints faced by hydropower operators in the WI needs improvements. The model used in the study cannot fully capture all of the EIM impacts and complexities of power system operations. In particular, a primary benefit of the EIM is a shorter dispatch interval; namely, 5 minutes. However, the model simulates the dispatch hourly. Therefore it cannot adequately measure the benefits of a more frequent dispatch. A tool with a finer time resolution would significantly improve simulation accuracy. When the study was conducted, the rules for the EIM were not clearly defined and it was appropriate to estimate societal benefits of the EIM assuming a perfect market without a detailed specification of the market design. However, incorporating a more complete description of market rules will allow for better estimates of EIM benefits. Furthermore, performing analyses using specific market rules can identify potential design flaws that may be difficult and expensive to correct after the market is established. Estimated cost savings from a more efficient dispatch are less than one percent of the total cost of electricity production.

14 SOLAR ENERGY↗

Detecting Humanity's Imprint on Rainfall Patterns: An S&TR Preprint

It's the perfect storm. At a time when global demand for water is rising rapidly due to population growth, urbanization, industrial activities, and expanded use of crop irrigation systems, climate change may be altering the timing, location, and amount of rain and snow that fall on large swaths of the planet. Computational models indicate that increases in global surface temperatures will redistribute rainfall in two ways. First, warmer air, which holds more water vapor, will intensify existing precipitation and drought conditions. That is, more rain will fall in wet areas, and evaporation will increase in drier areas. Second, shifts in atmospheric circulation patterns will push storm paths and subtropical dry zones toward the poles. Worldwide changes to rainfall patterns could magnify existing problems with water scarcity, food shortage, and possibly even political instabilities, thereby transforming an environmental concern into a global security issue. Confirming that the predicted changes are occurring and determining whether human-induced (anthropogenic) forces, such as greenhouse-gas emissions and ozone depletion, or naturally occurring fluctuations are causing the pattern shifts may help policy makers develop strategies for mitigating or adapting to the changes. However, extracting this information from global precipitation data can be challenging.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Poplar Interactome: Project Final Report

The feedstock plant Poplar has many advantages over traditional crop plants. Not only Poplar needs low energy input and off season storage as compared to feedstocks such as corn, in the winter season Poplar biomass is stored on the stem/trunk, and Poplar plantations serve as large carbon sink. A key constraint to the expansion of cellulosic bioenergy sources such as in Poplar however, is the negative consequence of converting land use from food crops to energy crops. Therefore in order for Poplar to become a viable energy crop it needs to be grown mostly on marginal land unsuitable agricultural crops. For this we need a better understanding of abiotic stress and adaptation response in poplar. In the process we expected to find new and existing poplar genes and their function that respond to sustain abiotic stress. We carried out an extensive gene expression study on the control untreated and stress (drought, salinity, cold and heat) treated poplar plants. The samples were collected from the stem, leaf and root tissues. The RNA of protein coding genes and regulatory smallRNA genes were sequenced generating more than a billion reads. This is the first such known study in Poplar plants. These were used for quantification and genomic analysis to identify stress responsive genes in poplar. Based on the quantification and genomic analysis, a select set of genes were studied for gene-gene interactions to find their association to stress response. The data was also used to find novel stress responsive genes in poplar that were previously not identified in the Poplar reference genome. The data is made available to the public through the national and international genomic data archives.

59 BASIC BIOLOGICAL SCIENCES↗

Two Years of Vegetation Assessment at Project 57 for 2016 and 2018

During the late 1950s, the Atomic Energy Commission (AEC), now the U.S. Department of Energy (DOE), conducted a series of experiments in Emigrant Valley to determine if a nuclear device subjected to a large conventional explosives detonation would result in a nuclear yield. One of these tests, Project 57, disseminated plutonium across the ground surface. Plutonium isotopes dispersed across the land surface can adhere to soil particles, particularly fine soil materials. Plutonium can be redistributed beyond the Contamination Area (CA) boundary by both wind and water. In 2016 and 2018, a vegetation assessment investigated the variation in vegetation cover of the CA to evaluate the potential influence of vegetation on aeolian (wind) transport of soil particles. Results showed the perennial cover was relatively stable during the time period, increasing from 17 percent to 19 percent, which is typical shrub cover for Great Basin valley shrublands. However, annual plant cover varied dramatically between years, likely because of dry conditions during 2018. Annual plant cover was 17 percent in 2016 and less than 2 percent in 2018. Bare soil was greater than 60 percent in both years, which provided a source of potential sediment erosion during wind and precipitation events, and consequently sediment transport outside of the CA. Additionally, in 2016, part of the CA appeared to have burned several decades prior, and was dominated by both native and non-native annual plants. The burned area was mostly bare soil in 2018, which was also a potential source for sediment transport. The variability of annual plant cover and the potential for changes in the perennial plant cover because of fire or drought mortality suggests future sediment transport from the Project 57 study site could vary dramatically over time.

54 ENVIRONMENTAL SCIENCES↗

The Brachypodium ENCODE Project – from sequence to function: Predicting physiological responses in grasses to facilitate engineering of biofuel crops

The overarching goal of this proposal was to gain deep knowledge of chromatin dynamics and gene networks related to stress responses in grasses. To accomplish this goal our Brachypodium ENCODE project (1) coupled drought-focused physiological analysis with multiple layers of ENCODE ‘omics’ profiling; (2) obtained fundamental information about the Brachypodium transcriptome, epigenome, chromatin dynamics, and gene regulatory networks; and (3) elucidated the regulatory dynamics of gene networks that can be manipulated to increase energy grass crop productivity.

09 BIOMASS FUELS↗

Systems Analysis of the Physiological and Molecular Mechanisms of Sorghum Nitrogen Use Efficiency, Water Use Efficiency and Interactions with the Soil Microbiome (Final Report for DE-SC0014395)

The specific project objectives were to: 1) Conduct deep census surveys of root microbiomes concurrent with phenotypic characterizations of a diverse panel of sorghum genotypes across multiple years to define the microbes associated with the most productive lines under drought and low nitrogen conditions. 2) Associate systems-level genotypic, microbial, and environmental factors with improved sorghum performance using robust statistical approaches. 3) Develop culture collections of sorghum root/leaf associated microbes that recapitulate root-enriched sequences defined in the census. 4) Perform controlled environment experiments for in-depth characterization and hypothesis testing of G sorghum x G microbe x E interactions . Validate physiological mechanisms, map genetic loci for stress tolerance, and determine the persistence of optimal microbial strains under greenhouse and field conditions.

59 BASIC BIOLOGICAL SCIENCES↗

Genetic_and_epigenetic_signatures_of_Populus_Trichocarpa_in_response_to_abiotic_stress

Plants respond to abiotic stresses such as drought, heat, and salinity through both shared and stress-specific regulatory pathways. However, the role of epigenetic mechanisms, particularly DNA methylation, in modulating these responses is still underexplored. Here, we integrated transcriptome profiling with whole-genome bisulfite sequencing (WGBS) to investigate the dynamic relationship between gene expression and DNA methylation in Populus trichocarpa during brief early-stage exposure to abiotic stress. Each stress elicited distinct transcriptional and methylation signatures; however, a subset of conserved stress-responsive genes was commonly regulated across treatments. Approximately 5% of differentially expressed genes also displayed differential methylation patterns, suggesting a coordinated role for DNA methylation in regulating gene expression. Motif enrichment analysis of differentially methylated regions revealed binding sites of key transcription factor families, including ERF, bHLH, and ABF, highlighting potential role for methylation in modulating transcription factor targeting. Furthermore, we identified stress-inducible molecular markers with potential applications in early stress detection and functional dissection of gene regulatory pathways. Together, these findings provide new insights into the coordinated genetic and epigenetic responses to abiotic stress and provide a foundation for developing biosensors and breeding strategies to enhance stress resilience woody plants.

CBI↗

Exopolysaccharide is required for motility, stress tolerance, and plant colonization by the endophytic bacterium Paraburkholderia phytofirmans PsJN

Paraburkholderia phytofirmans PsJN is an endophytic bacterium and has been shown to promote the growth and health of many different plants. Exopolysaccharide (EPS) plays important roles in plant-bacteria interaction and tolerance to environmental stresses. However, the function of EPS in PsJN and its interaction with plants remain largely unknown. In this study, a deletion mutation of bceQ gene, encoding a putative flippase for the EPS biosynthesis, was introduced in the genome of PsJN. The ΔbceQ mutant produced a significantly lower level of EPS than the wild type strain in culture media. Compared to the wild type PsJN, the ΔbceQ mutant was more sensitive to desiccation, UV damage, salt (NaCl) and iron (FeCl 3 ) stresses, and bacteriophage infection. More importantly, the mutation of bceQ decreased the endophytic colonization of PsJN in camelina (Camelina sativa) and pea (Camelina sativa) under plant drought stress conditions. To the best of our knowledge, this is the first report that EPS production is required for the maximal colonization of an endophytic bacterium in the plant tissues under stress conditions.

59 BASIC BIOLOGICAL SCIENCES↗

Determination of Leaf Water Content by Visible and Near-Infrared Spectrometry and Multivariate Calibration in Miscanthus

Leaf water content is one of the most common physiological parameters limiting efficiency of photosynthesis and biomass productivity in plants including Miscanthus. Therefore, it is of great significance to determine or predict the water content quickly and non-destructively. In this study, we explored the relationship between leaf water content and diffuse reflectance spectra in Miscanthus . Three multivariate calibrations including partial least squares (PLS), least squares support vector machine regression (LSSVR), and radial basis function (RBF) neural network (NN) were developed for the models of leaf water content determination. The non-linear models including RBF_LSSVR and RBF_NN showed higher accuracy than the PLS and Lin_LSSVR models. Moreover, 75 sensitive wavelengths were identified to be closely associated with the leaf water content in Miscanthus . The RBF_LSSVR and RBF_NN models for predicting leaf water content, based on 75 characteristic wavelengths, obtained the high determination coefficients of 0.9838 and 0.9899, respectively. The results indicated the non-linear models were more accurate than the linear models using both wavelength intervals. These results demonstrated that visible and near-infrared (VIS/NIR) spectroscopy combined with RBF_LSSVR or RBF_NN is a useful, non-destructive tool for determinations of the leaf water content in Miscanthus , and thus very helpful for development of drought-resistant varieties in Miscanthus .

59 BASIC BIOLOGICAL SCIENCES↗

A systems genetic analysis identifies putative mechanisms and candidate genes regulating vessel traits in poplar wood

Wood is the water conducting tissue of tree stems. Like most angiosperm trees, poplar wood contains water-conducting vessel elements whose functional properties affect water transport and growth rates, as well as susceptibility to embolism and hydraulic failure during water stress and drought. Here we used a unique hybrid poplar pedigree carrying genomically characterized chromosomal insertions and deletions to undertake a systems genomics analysis of vessel traits. We assayed gene expression in wood forming tissues from clonal replicates of genotypes covering dosage quantitative trait loci with insertions and deletions, genotypes with extreme vessel trait phenotypes, and control genotypes. A gene co-expression analysis was used to assign genes to modules, which were then used in integrative analyses to identify modules associated with traits, to identify putative molecular and cellular processes associated with each module, and finally to identify candidate genes using multiple criteria including dosage responsiveness. These analyses identified known processes associated with vessel traits including stress response, abscisic acid and cell wall biosynthesis, and in addition identified previously unexplored processes including cell cycle and protein ubiquitination. We discuss our findings relative to component processes contributing to vessel trait variation including signaling, cell cycle, cell expansion, and cell differentiation.

59 BASIC BIOLOGICAL SCIENCES↗