Transverse Velocity Discontinuities at Material Interfaces in the Compressible Euler Equations with SPH
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Astronomy and AstroPhysics, Mathematics and Comput↗
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Adjoint-Based Constant-Mass Partial Derivatives
It is well known that the adjoint equation in transport theory provides an economical means of computing derivatives of a system response to system parameters. It is also well known, though not often remarked on, that adjoint-based partial derivatives with respect to mass density are constant-volume derivatives. Likewise, adjoint-based partial derivatives with respect to dimensions (i.e., internal interface locations and the outer system boundary) are constant-density derivatives. In this paper, we derive a formula for the constant-mass partial derivative of a response with respect to internal interface locations and the outer system boundary. The formula uses the partial derivatives for density and dimensions, which may be adjoint-based. This paper includes numerical comparisons for a two-dimensional (r-z) cylinder that also demonstrate the correctness of the regular adjoint-based derivatives for surface locations. Adjoint-based derivatives for the neutron problems were computed using the new SENSMG code at Los Alamos National Laboratory.
73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
RedThreads: An Interface for Application-Level Fault Detection/Correction Through Adaptive Redundant Multithreading
In the presence of accelerated fault rates, which are projected to be the norm on future exascale systems, it will become increasingly difficult for high-performance computing (HPC) applications to accomplish useful computation. Due to the fault-oblivious nature of current HPC programming paradigms and execution environments, HPC applications are insufficiently equipped to deal with errors. We believe that HPC applications should be enabled with capabilities to actively search for and correct errors in their computations. The redundant multithreading (RMT) approach offers lightweight replicated execution streams of program instructions within the context of a single application process. Furthermore, the use of complete redundancy incurs significant overhead to the application performance.
97 MATHEMATICS AND COMPUTING↗
A computationally efficient P 1 radiation model for modern combustion systems utilizing pre-conditioned conjugate gradient methods
The iterative convergence of the P 1 radiation model can be slow in optically thin scenarios when employing classical iterative methods. In order to remedy this shortcoming, an in-house P 1 radiation model was interfaced with high performance, scalable, linear solver libraries. Next, the accuracies of P 1 radiation model calculations was assessed by comparing its predictions against discrete ordinates (DO) model calculations for prototypical problems representative of modern combustion systems. Corresponding benchmark results were also included for comparison. Utilizing Pre-Conditioners (PC) to the Conjugate Gradients (CG) method, the convergence time of the P 1 radiation model reduced by a factor of 30 for modest problem sizes and a factor of 70 for larger sized problems when compared against classical Gauss Seidel sweeps. Additionally, PC provided 50% computational savings compared to employing CG in a standalone mode. The P 1 model calculation times were about 25–30% of the DO model calculation time. The time to solution also scaled linearly with an increase in problem size. The weighted sum of gray gases model employed in this study in conjunction with the P 1 model provided good agreement against benchmark data with L 2 error norms (defined relative to corresponding DO calculations) improving when isotropic intensities were prevalent.
32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
STREAM: A Scalable Federated HPC Telemetry Platform
Obtaining and analyzing high performance computing (HPC) telemetry in real time is a complex task that can impact algo- rithmic performance, operating costs, and ultimately scientific outcomes. If your organization operates multiple HPC systems, filesystems, and clusters, telemetry streams can be synthesized in order to ease operational and analytics burden. In order to collect this telemetry, the Oak Ridge Leadership Computing Facility (OLCF) has deployed STREAM (Streaming Telemetry for Resource Events, Analytics, and Monitoring), which is a distributed and high-performance message bus based on Apache Kafka. STREAM collects center-wide performance information and must interface with many sources, including five HPE deployed supercomputers, each with their own Kafka cluster which is managed by HPCM. OLCF Supercomputers and their attached scratch filesystems currently send more than 300 million messages to over 200 topics producing around 1.3 Terabytes per day of telemetry data to STREAM. This paper describes the architectural principles that enable STREAM to be both resilient and highly performant while supporting multiple upstream Kafka clusters and other data sources. It also discusses the design challenges and decisions faced in adapting our existing system- monitoring infrastructure to support the first Exascale computing platform.
Adamson, Ryan↗
SonicPy: a suite of programs for ultrasound pulse-echo data acquisition and analysis
Sound speed and elastic constants measurements in solids and liquids are commonly performed using the ultrasound pulse-echo technique. Recent advances have expanded the use of this technique at numerous high pressure synchrotron beamlines and offline laboratories. However, the increased experimental throughput has revealed many limitations in existing software for handling the rapid measurement and the subsequent data-reduction. Here, we report the development of a collection of computer programs for sound speed measurements using the ultrasound pulse-echo technique, compatible with stepped multi-frequency, as well as broadband-pulse, couplant-corrected methods. The programs provide a highly interactive graphical interface, enable efficient measurement, exploration and near real-time analysis of the ultrasound data, and contain features useful for working with samples under high pressure and/or high temperature. The included analysis programs can alleviate the time required for data reduction from hours to less than a minute, allowing users to make timely and informed decisions regarding the appropriate experimental parameters.
97 MATHEMATICS AND COMPUTING↗
Enabling Parallel Performance and Portability of Solid Mechanics Simulations Across CPU and GPU Architectures
Efficiently simulating solid mechanics is vital across various engineering applications. As constitutive models grow more complex and simulations scale up in size, harnessing the capabilities of modern computer architectures has become essential for achieving timely results. This paper presents advancements in running parallel simulations of solid mechanics on multi-core CPUs and GPUs using a single-code implementation. This portability is made possible by the C++ matrix and array (MATAR) library, which interfaces with the C++ Kokkos library, enabling the selection of fine-grained parallelism backends (e.g., CUDA, HIP, OpenMP, pthreads, etc.) at compile time. MATAR simplifies the transition from Fortran to C++ and Kokkos, making it easier to modernize legacy solid mechanics codes. We applied this approach to modernize a suite of constitutive models and to demonstrate substantial performance improvements across different computer architectures. This paper includes comparative performance studies using multi-core CPUs along with AMD and NVIDIA GPUs. Results are presented using a hypoelastic–plastic model, a crystal plasticity model, and the viscoplastic self-consistent generalized material model (VPSC-GMM). The results underscore the potential of using the MATAR library and modern computer architectures to accelerate solid mechanics simulations.
Morgan, Nathaniel (ORCID:0000000276118449)↗
Electronic Structure Theories of Singlet Fission and Multiple Exciton Generation (Final Report)
This DOE grant supported the development of electronic structure theory, algorithms, and computer programs for simulating singlet fission and multiple excision generation processes from Sept. 2013 to Aug. 2018 (which was terminated due to the PI’s departure from Northwestern University to industry). One of the main achievements is the development of the so-called active space decomposition (ASD) method hat describes exciton dynamics in organic semiconductors and spin dynamics in strongly correlated materials. The resulting software was interfaced with the Brilliantly Advanced General Electronic-structure Library (BAGEL) package and widely disseminated to the research community.
73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
Electrostatic Origins of Linear Scaling Relationships at Bifunctional Metal/Oxide Interfaces: A Case Study of Au Nanoparticles on Doped MgO Substrates
Linear scaling relationships (SRs), which relate binding energies of adsorbates across a space of catalyst surfaces, have been extensively explored for metal and oxide surfaces, but little is known about their properties at interfaces between metal nanoparticles and oxide supports, which are ubiquitous in heterogeneous catalysis. Using periodic DFT calculations, scaling principles are extended to bifunctional Au/oxide interfaces. Adopting a Au nanorod on doped MgO (100) as a model, SRs for species participating in water gas shift, methanol synthesis, and oxidation reactions are reported. SR slopes are not constrained by the bond order conservation rule postulated for metals, oxides, and zeolites, potentially permitting greater flexibility in catalyst design strategies. Finally, the deviation from bond counting, along with the physical origin of scaling behavior at interfaces, are explored using a conceptual framework involving electrostatic interactions at the Au/oxide interface.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
An Interfacial Engineering Approach toward Operation of a Porous Solid Electrolyte CO 2 Electrolyzer
Waste CO 2 can be repurposed as a carbon feedstock for synthesizing valuable chemicals via CO 2 electrolysis. Porous solid electrolyte (PSE) CO 2 electrolysis has been demonstrated as an economically viable method to produce high purity products. This work applies an interfacial engineering approach to determine key factors to improve performance in PSE CO 2 electrolyzers. We standardize the assembly by binding the ionic resin into an ionomer wafer and utilize Computational Fluid Dynamics (CFD) to design gaskets for uniform fluid flow. Here, we employ the distribution of relaxation times (DRT) method to determine that anionic-conducting interfaces are the primary contributor to energy losses. To address this, we demonstrate that enhancing the contact between the cathode and the anion exchange membrane (AEM) and the AEM-ionic resin interface allows for low overpotential in deionized water operation.
09 BIOMASS FUELS↗
Mass Transfer Between Recirculation and Main Flow Zones: Is Physically Based Parameterization Possible?
Recirculation zones (RZs) are typical in many geophysical flows. These zones form near irregular solid boundaries and are separate from the main flow. Since mass can be trapped and later released locally from RZs, bulk transport can exhibit long tails—an anomalous behavior that is challenging to predict. The underlying RZ mass transfer and retention in this situation is poorly understood despite common parameterization by effective exchange coefficients in mobile-immobile (MIM) domain models. We viewed the mass transfer process using computationally resolved flow and transport fields inside two-dimensional rough fractures. RZs were delineated by a novel technique followed by quantification of mass transfer across the interface with the main flow zone. The results showed that the first-order mass transfer coefficient is a function of Reynolds number and velocity difference between the RZ and bulk flow. A distributed mobile-immobile model with the directly estimated parameters accurately reproduced bulk anomalous transport. As the distributed mobile-immobile model is not yet predictive, its development showed that mass transfer coefficients for flows involving RZs are physically meaningful, potentially predictable, and useful for elucidating local mass transfer processes within the general framework of mobile-immobile transport modeling.
58 GEOSCIENCES↗
Interface magnetism in vanadium-doped MoS 2 /graphene heterostructures
Magnetism in two-dimensional materials is of great importance in discovering new physical phenomena and developing new devices at the nanoscale. In this paper, first-principles simulations are used to calculate the electronic and magnetic properties of heterostructures composed of graphene and MoS 2 considering the influence of point defects and vanadium doping. It is found that the concentration of the dopants and the types of defects can result in induced magnetic moments leading to ferromagnetically polarized systems with sharp interfaces. This provides a framework for interpreting the experimental observations of enhanced ferromagnetism in both MoS 2 /graphene and V-doped MoS 2 /graphene heterostructures. The computed electronic and spin polarizations give a microscopic understanding of the origin of ferromagnetism in these systems and illustrate how doping and defect engineering can lead to targeted property tunability. Our work has demonstrated that through defects engineering, ferromagnetism can be achieved in V-doped MoS2/graphene heterostructures, providing a potential way to induce magnetization in other TMDC/graphene materials and opening new opportunities for their applications in nano-spintronics.
36 MATERIALS SCIENCE↗
Plasma breakdown in bubbles passing between two pin electrodes
The ignition of plasmas in liquids has applications from medical instrumentation to manipulation of liquid chemistry. Formation of plasmas directly in a liquid often requires prohibitively large voltages to initiate breakdown. Producing plasma streamers in bubbles submerged in a liquid with higher permittivity can significantly lower the voltage needed to initiate a discharge by reducing the electric field required to produce breakdown. The proximity of the bubble to the electrodes and the shape of the bubbles play critical roles in the manner in which the plasma is produced in, and propagates through, the bubble. In this paper, we discuss results from a three-dimensional direct numerical simulation (DNS) used to investigate the shapes of bubbles formed by injection of air into water. Comparisons are made to results from a companion experiment. A two-dimensional plasma hydrodynamics model was then used to capture the plasma streamer propagation in the bubble using a static bubble geometry generated by the DNS The simulations showed two different modes for streamer formation depending on the bubble shape. In an elliptical bubble, a short electron avalanche triggered a surface ionization wave (SIWs) resulting in plasma propagating along the surface of the bubble. In a circular bubble, an electron avalanche first traveled through the middle of the bubble before two SIWs began to propagate from the point closest to the grounded electrode where a volumetric streamer intersected the surface. In an elliptical bubble approaching a powered electrode in a pin-to-pin configuration, we experimentally observed streamer behavior that qualitatively corresponds with computational results. Optical emission captured over the lifetime of the streamer curve along the path of deformed bubbles, suggesting propagation of the streamer along the liquid/gas boundary interface. Plasma generation supported by the local field enhancement of the deformed bubble surface boundaries is a mechanism that is likely responsible for initiating streamer formation.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
Temperature- and Intensity-Dependent Photovoltaic Measurements to Identify Dominant Recombination Pathways
In novel photovoltaic absorbers, it is often difficult to assess the root causes of low open-circuit voltages, which may be due to bulk recombination or sub-optimal contacts. In the present work, we discuss the role of temperature- and illumination-dependent device electrical measurements in quantifying and distinguishing these performance losses - in particular, for determining bounds on interface recombination velocities, band alignment, and minority carrier lifetime. We assess the accuracy of this approach by direct comparison to photoelectron spectroscopy. Then, we demonstrate how more computationally intensive model parameter fitting approaches can draw more insights from this broad measurement space. We apply this measurement and modeling approach to high-performance III-V and thin-film chalcogenide devices.
14 SOLAR ENERGY↗
Creating Feature Representations of Antibody-Antigen Complexes for Fast Binding Prediction with Machine Learning
Antibody-antigen interactions underlie the function of the immune system. Numerous computational tools exist that aim to predict important quantities associated with antibodyantigen interactions, such as binding energy. Efficient and accurate prediction of such quantities would greatly accelerate vaccine (antigen) and therapeutic antibody design. Current methods and tools, however, rely on varying degrees of computationally expensive steps that limit their use on problems that require many predictions, and moreover, no single method produces consistently accurate estimates. In this project, we determined the feasibility of creating feature representations that concisely describe interacting pairs of antibody and antigen as rapidly computable numerical vectors, given the antibody-antigen co-complex. Such a featurization will allow the use of a statistical machine learning model that jointly models the results of the disparate existing computational tools available. In turn, this will greatly enhance their combined predictive performance. We developed a feature representation consisting of 86 descriptors of the antigen-antibody interface which is then reduced into a lower dimensional representation using a neural network dimensionality reduction step. We have demonstrated that this feature representation serves its intended purpose of rapidly describing antigen-antibody pairs for the task of binding strength prediction. While this feasibility study has proven that such a feature representation is feasible, additional research is likely improve its ability to support various tasks, including binding strength prediction.
59 BASIC BIOLOGICAL SCIENCES↗
A Closed-Loop Distribution System Restoration Tool for Natural Disaster Recovery. Final CRADA report
We propose to continue the development of the restoration algorithms and the tool’s user interface, both of which have been developed under the GMLC-0131 project. This project aims to develop a distribution restoration decision support tool that will assist utilities in performing distribution restoration after extreme weather events in an optimal and efficient manner. The tool will integrate the weather information/forecasts and system fragility assessment together with the field measurement data to improve the situational awareness and estimate the system damage status. Advanced optimization models will be leveraged to dispatch repair crews and associated resources. New resources (e.g., automatic switches and distributed generators (DGs)) enabled by distribution automation and smart grid development will be utilized to reconfigure distribution grids and pick up loads promptly to reduce the outage sizes and durations. The closed-loop feature of the tool will make the tool adaptive to the evolving weather events and varying restoration capabilities. In this CRADA, we will collaborate with S&C Electric Company (S&C) to refine ANL-1060 (07/17/2019) the restoration algorithms that can be potentially applicable for any utility systems and vendor products, including: 1) Customizable information from both utility users and vendor users; 2) User interface design.
54 ENVIRONMENTAL SCIENCES↗
Energize: An Interactive Evaluation Tool for Engaging the General Public with Energy Decision Making - Final Report
The public has an ever-increasing interest in the economic, environmental, and social impacts of global energy production. To support informed decision making, the scientific community has a responsibility to communicate reliable and straight-forward information to the general public, in an engaging way, regarding energy systems and how choices made at different stages of an energy technology life cycle can impact the cost, amount of materials used, and waste produced. Our objective is to enhance public engagement via an interactive electrical energy game (Energ!ze) through which players interact with one another in their quest to develop an electrical energy portfolio that optimizes economic (e.g., company profit), environmental (e.g., reduced CO 2 emissions), and social (e.g., public opinion) impacts. The design and development of Energ!ze was an iterative process involving an interdisciplinary team of engineers, discipline-based scientists, computer scientists, and education experts. The development objectives were two-fold: (1) Accurate and quantifiable modeling of electrical energy systems and (2) Engaging and interactive user interface within the construct of the game narrative. The major game mechanics in the current playable Energ!ze version focus on economic metrics, and the database is scaffolded to add environmental and social metrics for future versions. This report details the outcome of the funding period (Section 2 and 3) and describes the development process, along with recommendations for future development (Section 4).
29 ENERGY PLANNING, POLICY, AND ECONOMY↗
General Mode Scanning Probe Microscopy
A critical part of SPM measurements is the information transfer from the probe-sample junction to the measurement system. Current information transfer methods heavily compress the information-rich data stream by averaging the data over a time interval, or via heterodyne detection approaches such as lock-in amplifiers and phase-locked loops. As a consequence, highly valuable information at the sub-microsecond time scales or information from frequencies outside the measurement band is lost. We have developed a fundamentally new approach called General Mode (G-mode), where we can capture the complete information stream from the detectors in the microscope. The availability of the complete information allows the microscope operator to analyze the data via information-theory analysis or comprehensive physical models. Furthermore, the complete data stream enables advanced data-driven filtering algorithms, multi-resolution imaging, ultrafast spectroscropic imaging, spatial mapping of multidimensional variability in material properties, etc. Though we applied this approach to scanning probe microscopy, the general philosophy of G-mode can be applied to many other modes of microscopy. G-mode data is captured by completely custom software written in LabVIEW and Matlab. The software generates the waveforms to electrically, thermally, or mechanically excite the SPM probe. It handles real-time communications with the microscope software for operations such as moving the SPM probe position and also controls other instrumentation hardware. The software also controls multiple variants of high-speed data acquisition cards to excite the SPM probe with the excitation waveform and simultaneously measure multiple channels of information from the microscope detectors at sampling rates of 1-100 MHz. The software also saves the raw data to the computer and allows the microscope operator to visualize processed or filtered data during the experiment. The software performs all these features while offering a user-friendly interface.
Somnath, Suhas↗