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At least 1,495 records · Page 83

Accurate Optical Constants for Liquids in the Near-Infrared: Improved Methods for Obtaining the n and k Constants from 1 to 4 Microns

Other than open bodies of water, bulk liquids are rarely encountered in the environment. Rather, liquids are typically found as aerosols, liquid droplets, or liquid layers on sundry substrates: glass, concrete, metals, etc. The layers can be of varying thicknesses, from micron-level to millimeter thick deposits. The infrared (IR) reflectance spectra of such deposits vary greatly, approximating the bulk reflectance for thicker deposits and for thinner layers on reflective surfaces, producing “transflectance” spectra that more closely replicate simple transmission of the IR light twice traversing the absorptive medium. Rather than recording large numbers of such spectra to serve as endmembers of a spectral reflectance library, we have recognized that the spectra can be modeled so long as the complex optical constants n(?) and k(?) are known as a function of frequency, ?. Here n is the real (dispersion) part and k is the imaginary (absorption) component of the complex index of refraction. However, in many cases the bands in the longwave IR (7 to 13 µm) can become saturated, and better signal-to-noise and specificity can be realized at shorter wavelengths. In earlier studies, we obtained the n/k values from 1.28 to 25 µm for a series of liquids, but are now expanding those measurements to include additional liquid species and extending the spectral range to lower wavelengths. In this paper we describe the methodologies for compiling and fusing the two data sets collected to provide better and more complete spectral coverage from 1 to 25 µm (10,000 to 400 cm-1). The broad spectral range means that one needs to account for both strong and weak spectral features, all of which can be useful for detection, depending on the scenario. To account for the large dynamic range, both long and short path length transmission cells are required for accurate measurements.

optical constants, refractive index, liquids, mid ↗

Validation of Oregon State University High Temperature Test Facility Experiments Using Pronghorn

The OSU High Temperature Test Facility is a quarter-scale diameter, 1/64 scale volume test facility meant to replicate thermophysical phenomena in the prototypical General Atomics Modular High Temperature Gas Reactor. Tests pertaining to conduction cooldown events were performed from 2016-2019, providing a large database by which computational methods that are applicable to different length scales can be validated. One of these codes is Pronghorn, which is a coarse-meshed, porous-based subchannel thermal hydraulics code based on the MOOSE application, with the intention of better capturing the physics of both conduction and convection heat transfer within the OSU HTTF core. The goal of this summer project is to develop the framework by which Pronghorn can perform validation exercises of the HTTF core for benchmarking, by generating a mesh appropriate to the geometry of the HTTF core, developing input decks that accurately capture the initial and boundary conditions, materials, and relevant equations to the physics seen in the HTTF core, and using a postprocessor to compare simulation results to various experimental data. While validation of codes is a multi-year project, a mesh has been generated and tested in Pronghorn that meets mass conservation and basic heat transfer principles. The next step is to accurate depict the fluid inlet and outlet boundary conditions, which will be performed using computational fluid dynamics software.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

The bright end of the z ∼ 9 and z ∼ 10 UV luminosity functions using all five candels fields

The deep, wide-area (∼800–900 arcmin{sup 2}) near-infrared/WFC3/IR + Spitzer/IRAC observations over the CANDELS fields have been a remarkable resource for constraining the bright end of high-redshift UV luminosity functions. However, the lack of Hubble Space Telescope (HST) 1.05 μm observations over the CANDELS fields has made it difficult to identify z ∼ 9–10 sources robustly, since such data are needed to confirm the presence of an abrupt Lyman break at 1.2 μm. Here, we report on the successful identification of many such z ∼ 9–10 sources from a new HST program (z9-CANDELS) that targets the highest-probability z ∼ 9–10 galaxy candidates with observations at 1.05 μm, to search for a robust Lyman-break at 1.2 μm. The potential z ∼ 9–10 candidates were preselected from the full HST, Spitzer/IRAC S-CANDELS observations, and the deepest-available ground-based optical+near-infrared observations (CFHTLS-DEEP+HUGS+UltraVISTA+ZFOURGE). We identified 15 credible z ∼ 9–10 galaxies over the CANDELS fields. Nine of these galaxies lie at z ∼ 9 and five are new identifications. Our targeted follow-up strategy has proven to be very efficient in making use of scarce HST time to secure a reliable sample of z ∼ 9–10 galaxies. Through extensive simulations, we replicate the selection process for our sample (both the preselection and follow-up) and use it to improve current estimates for the volume density of bright z ∼ 9 and z ∼ 10 galaxies. The volume densities we find are 5{sub −2}{sup +3}× and 8{sub −3}{sup +9}× lower, respectively, than those found at z ∼ 8. When compared with the best-fit evolution (i.e., d log{sub 10} ρ{sub UV}/dz=−0.29±0.02) in the UV luminosity densities from z ∼ 8 to z ∼ 4 integrated to 0.3L{sub z=3}{sup ∗} (−20 mag), these luminosity densities are 2.6{sub −0.9}{sup +1.5}× and 2.2{sub −1.1}{sup +2.0}× lower, respectively, than the extrapolated trends. Our new results are broadly consistent with the “accelerated evolution” scenario at z > 8, consistent with that seen in many models.

79 ASTRONOMY AND ASTROPHYSICS↗

Tracking Climate Effects on Plant-Pollinator Interaction Phenology with Satellites and Honey Bee Hives

Background/Question/Methods: The complexity of plant-pollinator interactions, the large number of species involved, and the lack of species response functions present challenges to understanding how these critical interactions may be impacted by climate and land cover change on large scales. Given the importance of this interaction for terrestrial ecosystems, it is desirable to develop new approaches. We monitor the daily weight change of honey bee (Apis mellifera) colonies to record the phenology of the Honey Bee Nectar Flow (HBNF) in a volunteer network (honeybeenet.gsfc.nasa.gov). The records document the successful interaction of a generalist pollinator with a variety of plant resources. We extract useful HBNF phenology metrics for three seasons. Sites currently exist in 35 states/provinces in North America, with a concentration in the Mid-Atlantic region. HBNF metrics are compared to standard phenology metrics derived from remotely sensed vegetation indices from NASA's MODIS sensor and published results from NOAA's A VHRR. At any given time the percentage of plants producing nectar is usually a sma11 fraction of the total satellite sensor signal. We are interested in determining how well the 'bulk' satellite vegetation parameters relate to the phenology of the HBNF, and how it varies spatially on landscape to continental scales. Results/Conclusions: We found the median and peak seasonal HBNF dates to be robust, with variation between replicate scale hives of only a few days. We developed quality assessment protocols to identify abnormal colony artifacts. Temporally, the peak and median of the HBNF in the Mid-Atlantic show a significant advance of 0.58 d/y beginning about 1970, very similar to that observed by the A VHRR since 1982 (0.57 d/y). Spatially, the HBNF metrics are highly correlated with elevation and winter minimum temperature distribution, and exhibit significant but regionally coherent inter-annual variation. The relationship between median of the spring HBNF with the "Green-up" metric from the 500 meter MODIS NDVI phenology product, for sites throughout the Eastern US 2000-2009, is well described by a single linear fit (r(exp 2) = 0.72). We conclude.that for the tree-dominated areas of the Eastern US at least the spring HBNF can be tracked very well by MODIS phenology. Analysis of other regions and seasons is presently underway but with more limited data. Spatial patterns in the eastern US and management implications will be presented and discussed.

Esaias, Wayne E.↗

Antiretroviral therapy for HIV and intrahepatic hepatitis C virus replication

HIV alters host responses to hepatitis C virus (HCV). However, the impact of antiretroviral therapy (ART) on HCV is rarely understood in relevant tissues and never before within individual hepatocytes. HIV and HCV kinetics were studied before and after ART initiation among 19 HIV/HCV co-infected persons. From five persons with the largest decline in plasma HCV RNA, liver tissues collected before and during ART, when plasma HIV RNA was undetectable, were studied. Here we used single-cell laser capture microdissection and quantitative PCR to assess intrahepatic HCV. Immunohistochemistry was performed to characterize intrahepatic immune cell populations. Plasma HCV RNA declined by 0.81 (0.52–1.60) log 10 IU/ml from a median (range) 7.26 (6.05–7.29) log 10 IU/ml and correlated with proportions of HCV-infected hepatocytes (r = 0.89, P = 2 × 10 -5 ), which declined from median (range) of 37% (6–49%) to 23% (0.5–52%) after plasma HIV clearance. Median (range) HCV RNA abundance within cells was unchanged in four of five participants. Liver T-cell abundance unexpectedly decreased, whereas natural killer (NK) and NK T-cell infiltration increased, correlating with changes in proportions of HCV-infected hepatocytes (r = -0.82 and r = -0.73, respectively). Hepatocyte expression of HLA-E, an NK cell restriction marker, correlated with proportions of HCV-infected hepatocytes (r = 0.79). These are the first data to show that ART control of HIV reduces the intrahepatic burden of HCV. Furthermore, our data suggest that HIV affects the pathogenesis of HCV infection by an NK/NK T-cell-mediated mechanism that may involve HLA-E and can be rescued, at least in part, by ART.

60 APPLIED LIFE SCIENCES↗

The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data

High-throughput RNA sequencing (RNA-seq) has recently become the method of choice to define and analyze transcriptomes. For the model moss Physcomitrella patens, although this method has been used to help analyze specific perturbations, no overall reference dataset has yet been established. In the framework of the Gene Atlas project, the Joint Genome Institute selected P. patens as a flagship genome, opening the way to generate the first comprehensive transcriptome dataset for this moss. The first round of sequencing described here is composed of 99 independent libraries spanning 34 different developmental stages and conditions. Upon dataset quality control and processing through read mapping, 28 509 of the 34 361 v3.3 gene models (83%) were detected to be expressed across the samples. Differentially expressed genes (DEGs) were calculated across the dataset to permit perturbation comparisons between conditions. The analysis of the three most distinct and abundant P. patens growth stages - protonema, gametophore and sporophyte - allowed us to define both general transcriptional patterns and stage-specific transcripts. As an example of variation of physico-chemical growth conditions, we detail here the impact of ammonium supplementation under standard growth conditions on the protonemal transcriptome. Finally, the cooperative nature of this project allowed us to analyze inter-laboratory variation, as 13 different laboratories around the world provided samples. We compare differences in the replication of experiments in a single laboratory and between different laboratories.

59 BASIC BIOLOGICAL SCIENCES↗

Expanding the capability of reaction-diffusion codes using pseudo traps and temperature partitioning: Applied to hydrogen uptake and release from tungsten

Simulating the implantation and thermal desorption evolution in a reaction-diffusion model requires solving a set of coupled differential equations that describe the trapping and release of atomic species in Plasma Facing Materials (PFMs). These fundamental equations are well outlined by the Tritium Migration Analysis Program (TMAP) which can model systems with no more than three active traps per atomic species. To overcome this limitation, we have developed a Pseudo Trap and Temperature Partition (PTTP) scheme allowing us to lump multiple inactive traps into one pseudo trap, simplifying the system of equations to be solved. For all temperatures, we show the trapping of atoms from solute is exactly accounted for when using a pseudo trap. However, a single effective pseudo trap energy can not well replicate the release from multiple traps, each with its own detrapping energy. However, atoms held in a high energy trap will remain trapped at relatively low temperatures, and thus there is a temperature range in which release from high energy traps is effectively inactive. By partitioning the temperature range into segments, a pseudo trap can be defined for each segment to account for multiple high energy traps that are actively trapping but are effectively not releasing atoms. With increasing temperature, as in controlled thermal desorption, the lowest energy trap is nearly emptied and can be removed from the set of coupled equations, while the next higher energy trap becomes an actively releasing trap. Each segment is thus calculated sequentially, with the last time step of a given segment solution being used as an initial input for the next segment as only the pseudo and actively releasing traps are modeled. This PTTP scheme is then applied to experimental thermal desorption data for tungsten (W) samples damaged with heavy ions, which display six distinct release peaks during thermal desorption. Without modifying the TMAP7 source code the PTTP scheme is shown to successfully model the D retention in all six traps. In conclusion, we demonstrate the full reconstruction from the plasma implantation phase through the controlled thermal desorption phase with detrapping energies near 0.9, 1.1, 1.4, 1.7, 1.9 and 2.1 eV for a W sample damaged at room temperature.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Validation of A Sensorimotor Disorientation Ground Analog

INTRODUCTION Simulating the sensorimotor disorientation effects of gravity transitions after prolonged stays in microgravity is exceedingly challenging on Earth. In a previous study [1], a Sensorimotor Disorientation Analog (SDA) was developed based on subjective feedback from previously flown astronauts. The purpose of this study was to validate this SDA by comparing performance in movement tasks that have a wealth of spaceflight data against task performance while using the SDA. METHODS Thirty healthy non-astronaut subjects (17 males, 13 females; Mean ± SD, Age: 33.5 ± 7.2 years, Height: 68.0 ± 3.4 in, Weight: 164 ± 26 lbs.) volunteered to participate in this study. Subjects performed three movement tasks: computerized dynamic posturography (CDP), obstacle walk, and tandem walk. For CDP, subjects maintained an upright stance for 20s with eyes closed on an unstable pitch sway-referenced platform with head erect (sensory organization test (SOT)-5) and with head pitch ±20° to an auditory cue(SOT-5M). The obstacle walk involved a sit-to-stand with 10s of quiet stance followed by walking to and around a cone placed 4m away while navigating a 30cm obstacle to the cone and back. The tandem walk involved walking heel-to-toe for approximately 10-12 steps with eyes open and eyes closed. Subjects performed the three movement tasks under three levels of the SDA replicating different time points of recovery: none (preflight), low (Return (R)+24- 48hours), and high (R+0- 24hours). The SDA included galvanic vestibular stimulation (GVS) to disorient the vestibular system and a weighted suit (trunk, wrists, and ankles) to alter proprioceptive feedback and replicate subjective heaviness. RESULTS As the SDA magnitude increased, overall performance outcomes decreased. However, the ability of the SDA to replicate the range of astronaut postflight performance was task dependent. CDP SOT-5 performance across SDA levels closely replicated astronaut performance at all time points. SOT-5M, however, had minimal performance changes across SDA levels and was unable to replicate astronaut performance. The obstacle walk showed performance changes across SDA levels and matched astronaut performance preflight and at R+24-48hrs (low). Obstacle walk performance at the high SDA level was reduced in comparison to the low level; however, it was not replicative of astronaut performance immediately after landing. Last, tandem walk had distinct groupings of performance across SDA levels and was able to elicit a high level of disorientation consistent with R+0-24 hours (high) postflight performance for eyes open and eyes closed. The low SDA level for both eyes open and eyes closed was more disruptive than previous crewmember performance at the R+24-48 hours timepoint. CONCLUSION The SDA was developed to replicate postflight sensorimotor disruptions. However, it is well-known that immediately post-landing, astronauts can experience motion sickness, dehydration, fatigue, orthostatic intolerance, illusory sensations, lumbar pain, etc. This multi-system response to return to 1G varies widely across astronauts and, as such, it was not unexpected that the extreme ends of responses in the R+0-24hrs time period were the most difficult to replicate. These results suggest that the SDA levels are able to elicit distinct performance groupings and, although not able to perfectly replicate R+0-24hrs, the SDA did replicate a large range of performance after return to Earth.

S C Moudy↗

Colorado Better Buildings Project. Final Report

The Colorado Better Buildings project intended to bring new and existing energy efficiency model programs to market with regional collaboration and funding partnerships. The goals for Boulder County and its program partners were to advance energy efficiency investments, stimulate economic growth in Colorado and advance the state’s energy independence. Collectively, three counties set out to complete 9,025 energy efficiency upgrades in 2.5 years and they succeeded in doing so. Energy efficiency upgrades have been completed in more than 11,000 homes and businesses in these communities. Boulder County and its partners received a $25 million BetterBuildings grant from the U.S. Department of Energy under the American Recovery and Reinvestment Act in the summer of 2010. This was also known as the Energy Efficiency and Conservation Block Grants program. With this funding, Boulder County, the City and County of Denver, and Garfield County set out to design programs for the residential and commercial sectors to overcome key barriers in the energy upgrade process. Since January 2011, these communities have paired homeowners and business owners with an Energy Advisor – an expert to help move from assessment to upgrade with minimal hassle. Pairing this step-by-step assistance with financing incentives has effectively addressed many key barriers, resulting in energy efficiency improvements and happy customers. An expert energy advisor guides the building owner through every step of the process, coordinating the energy assessment, interpreting results for a customized action plan, providing a list of contractors, and finding and applying for all available rebates and low-interest loans. In addition to the expert advising and financial incentives, the programs also included elements of social marketing, technical assistance, workforce development and contractor trainings, project monitoring and verification, and a cloud-based customer data system to coordinate among field advisors and across local governments and local service vendors. A portion of the BetterBuildings grant went to the Metro Mayors Caucus (MMC) who worked in partnership with the Denver Regional Council of Governments (DRCOG) to conduct a series of 10 energy efficiency workshops for local government officials and other interested parties. The workshops helped showcase lessons learned on energy efficiency and helped guide other local governments in the establishment of similar programs. The workshops covered a wide range of energy efficiency and renewable energy topics such as clean energy finance, social mobilization and communications, specific case studies of Colorado towns, energy efficiency codes, net zero buildings and solar power. Since the programs launched in January 2011, these communities have collectively spurred economic investments in energy efficiency, achieved greater than 5:1 leveraging of grant funds, saved energy and reduced greenhouse gas emissions, provided trainings for a robust local energy contractor network, and proved out viable and replicable program models that local utilities and other communities are adopting, with long lasting market transformation.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

A REDUCED ORDER MODELING APPROACH TO PROBABILISTIC CREEP-DAMAGE PREDICTIONS IN FINITE ELEMENT ANALYSIS

This paper introduces a computationally efficient Reduced Order Modeling (ROM) approach for the probabilistic prediction of creep-damage failure. Component-level probabilistic simulations are needed to assess the reliability and safety of high-temperature components. Full-scale probabilistic creep-damage modeling in finite element (FE) approach is computationally expensive requiring many hundreds of simulations to replicate the uncertainty of component failure. To that end, ROM is proposed to minimize the elevated computational cost while controlling the loss of accuracy. It is proposed that full-scale probabilistic simulations can be completed in 1D at a reduced cost, the extremum conditions extracted, and those conditions applied for lower-cost 2D/3D probabilistic simulations of components that capture the mean and uncertainty of failure. The probabilistic Sine-hyperbolic (Sinh) model is selected which in previous work was calibrated to alloy 304 stainless steel. The Sinh model includes probability density functions (pdfs) for test condition (stress and temperature), initial damage (i.e. microstructure), and material properties uncertainty. The Sinh model is programmed into ANSYS finite element software using the USERCREEP.F material subroutine. First, the Sinh model and FE code are subject to verification and validation to ensure the accuracy of the simulations. Numerous Monte Carlo simulations are executed in a 1D model to generate probabilistic creep deformation, damage, and rupture data. This data is analyzed and the probabilistic parameters corresponding to extreme creep response are extracted. The ROM concept is applied where only the extreme conditions are applied in the 2D probabilistic prediction of a component. The probabilistic predictions between the 1D and 2D geometry is compared to assess ROM for creep. The accuracy of the probabilistic prediction employing the ROM approach will potentially reduce the time and cost of simulating complex engineering systems. Future studies will introduce multi-stage Sinh, stochasticity, and spatial uncertainty for improved prediction.

36 MATERIALS SCIENCE↗

Spectro-Photometer for the History of the Universe, Epoch of Reionization, and Ices Explorer, One Quarter Scale Prototype Thermal Testing

The Spectro-Photometer for the History of the Universe, Epoch of Reionization, and Ices Explorer (SPHEREx) instrument has been proposed as NASA Small Explorer (SMEX) and Medium Explorer (MIDEX) missions designed to perform an all-sky near-infrared survey. The primary science objective of the SPHEREx instrument is the mapping and cataloging of data on galaxy red shifts and absorption spectra. The SPHEREx instrument utilizes a linear variable band pass filter to provide discrete spectral coverage of the 0.75 to 5.0 μm range. The nominal on-orbit mission lifetime for the instrument is two years with continuous primary science imaging. The SPHEREx instrument will be placed in a near-circular LEO sun-synchronous terminator orbit with a mean altitude of 600 km, and solar beta angles ranging from 59° to 90°. A passive V-groove radiator cooling system was selected for the SPHEREx instrument. This design was chosen for its simplicity and lack of vibration. It includes five radiator stages with the coldest two stages providing temperatures below 80K and 55K for the 2.5μm and 5.3μm detectors respectively. A one quarter scale thermal prototype was constructed to characterize the performance of the SPHEREx thermal control subsystem. This prototype was directly derived and scaled from the current flight design, and accurately replicates all heat flow paths at scale. The prototype was tested in two bounding hot flight-like environments in the Cryogenic Systems Engineering, Advanced Thermal Technology Lab at NASA’s Jet Propulsion Laboratory. Following testing, a previously developed one quarter scale thermal model was correlated to the two conditions seen in test. The resultant correlated model is able to predict the prototype test temperatures to within 1K for all critical radiator stages. An overview of the thermal control design approach, the test configuration, and test and correlation results are presented.

Bolton, Douglas A.↗

BOPTest As a Platform for Building Controls and Grid-Interactive Buildings Workforce Training

Building automation and controls are becoming increasingly complex with the emergence of Grid Integrated Efficient Buildings (GEBs) as well as new highly efficient sequences of operation and data-driven control schemes. However, there remains a significant gap in hands-on training opportunities for building operators and technicians to gain practical experience with advanced control systems in a low-risk environment. This paper presents BOPTEST (Building Optimization Performance Test) as a suitable platform for workforce training in building controls and GEB technologies. BOPTEST provides a suite of standardized building simulation test cases with a REST API, real-time control interfaces through BACnet, semantic models connecting users to building data, and built-in calculation of control metrics and performance indicators. The platform enables trainees to interact with virtual buildings using industry-standard protocols while learning how to implement and innovate control strategies. The training platform is designed to offer a structured and interactive learning experience for building engineers, helping them effectively develop, learn, and retain skills in fault identification, troubleshooting, and correction. The workflow is divided into three main phases: 1) Setup, 2) Exercise, and 3) Review, each comprising specific activities performed by either the instructor or the student. Initial pilot training sessions have yielded positive feedback from instructors and participants and demonstrates that BOPTEST effectively fills an industry need for a low-risk training resource via simulation of real building control systems, allowing trainees to gain practical experience before working in the field. The platform's ability to provide immediate performance feedback while maintaining familiar industry interfaces makes it particularly suitable for workforce development programs. This work provides a replicable model for leveraging building simulation in control education and training.

Paul, Lazlo↗

BOPTEST as a Platform for Building Controls and Grid-Interactive Buildings Workforce Training

Building automation and controls are becoming increasingly complex with the emergence of Grid Integrated Efficient Buildings (GEBs) as well as new highly efficient sequences of operation and data-driven control schemes. However, there remains a significant gap in hands-on training opportunities for building operators and technicians to gain practical experience with advanced control systems in a low-risk environment. This paper presents BOPTEST (Building Optimization Performance Test) as a suitable platform for workforce training in building controls and GEB technologies. BOPTEST provides a suite of standardized building simulation test cases with a REST API, real-time control interfaces through BACnet, semantic models connecting users to building data, and built-in calculation of control metrics and performance indicators. The platform enables trainees to interact with virtual buildings using industry-standard protocols while learning how to implement and innovate control strategies. The training platform is designed to offer a structured and interactive learning experience for building engineers, helping them effectively develop, learn, and retain skills in fault identification, troubleshooting, and correction. The workflow is divided into three main phases: 1) Setup, 2) Exercise, and 3) Review, each comprising specific activities performed by either the instructor or the student. Initial pilot training sessions have yielded positive feedback from instructors and participants and demonstrates that BOPTEST effectively fills an industry need for a low-risk training resource via simulation of real building control systems, allowing trainees to gain practical experience before working in the field. The platform's ability to provide immediate performance feedback while maintaining familiar industry interfaces makes it particularly suitable for workforce development programs. This work provides a replicable model for leveraging building simulation in control education and training.

Paul, Lazlo↗

Geostationary Operational Environmental Satellite (GOES-N report). Volume 1: Technical

The GOES-N study consisted of five distinct tasks including: determining replication costs of GOES I-M and GOES-7 in the GOES-N time frame; defining and evaluating modifications to GOES I-M to improve efficiency or reduce costs; and defining evolutionary changes to the GOES I-M design to satisfy National Weather Service (NWS) 1983 and NOAA 1989 requirements. The categorization and disposition of NOAA requirements is reported in volume 1 section 4. Results of the GOES I-M efficiency/cost improvement modifications study are described in Section 7.1. The system concept options 1, 2, and 3 that generally represent the results of the Task 2, 3A, and 3B studies are summarized in Section 7.2. Another result of the GOES-N study, the determination of which NWS 1983 and NOAA 1989 requirements can be met with the three options, is contained in volume 1 section 7. Conclusions and recommendations are covered in volume 1 section 8. Imager, sounder, control system, space environment monitor, search and rescue, weather facsimile, data collection system, and products/process/communications recommendations were extracted from sections 9, 10, and 11. Section 8 also contains conclusions pertaining to programmatic operational satellite issues (prerequisite development strategies, the direct procurement of instruments by the government, protoflight mission, etc.). Sections 9, 10, and 11 address instrument, control system, image/navigation/registration, and other system design considerations and surveys. These sections are supported by the appendices in volume 2.

Source record↗

A Modified P1 Moiety Enhances in vitro Antiviral Activity against Various Multi-Drug-Resistant HIV-1 Variants and in vitro CNS Penetration Properties of a Novel Nonpeptidic Protease Inhibitor, GRL-10413

We here report that GRL-10413, a novel non-peptidic HIV-1 protease inhibitor (PI) containing a modified P1 moiety and a sulfonamide isostere, is highly active against laboratory HIV-1 strains and primary clinical isolates (EC 50 : 0.00035 - 0.0018 μM) with minimal cytotoxicity (CC 50 : 35.7 μM). GRL-10413 blocked the infectivity and replication of HIV-1 NL4-3 variants selected by up to 5 μM concentrations of atazanavir, lopinavir, or amprenavir (EC 50 : 0.0021 - 0.0023 μM). GRL-10413 also maintained its strong antiviral activity against multi-drug-resistant clinical HIV-1 variants isolated from patients, who no longer responded to various antiviral regimens after long-term antiretroviral therapy. The development of resistance against GRL-10413 was significantly delayed compared to that of APV. In addition, GRL-10413 showed a favorable central nervous system (CNS) penetration property as assessed with an in vitro blood brain barrier (BBB) reconstruction system. Analysis of the crystal structure of HIV-1 protease in complex with GRL-10413 demonstrated that the modified P1 moiety of GRL-10413 has a greater hydrophobic surface area and makes greater van der Waals contacts with active-site amino acids of protease than in the case of darunavir. Moreover, the chlorine substituent in the P1 moiety interacts with protease in two distinct configurations. The present data demonstrate that GRL-10413 has desirable features for treating patients infected with wild-type and/or multi-drug-resistant HIV-1 variants with favorable CNS-penetration capability and that the newly modified P1-moiety may confer desirable features in designing novel anti-HIV-1 PIs.

Amano, Masayuki↗

PNT1 is a C11 cysteine peptidase essential for replication of the Trypanosome Kinetoplast

The structure of a C11 peptidase PmC11 from the gut bacterium, Parabacteroides merdae , has recently been determined, enabling the identification and characterization of a C11 orthologue, PNT1, in the parasitic protozoon Trypanosoma brucei . A phylogenetic analysis identified PmC11 orthologues in bacteria, archaea, Chromerids, Coccidia, and Kinetoplastida, the latter being the most divergent. A primary sequence alignment of PNT1 with clostripain and PmC11 revealed the position of the characteristic His-Cys catalytic dyad (His 99 and Cys 136 ), and an Asp (Asp 134 ) in the potential S 1 binding site. Immunofluorescence and cryoelectron microscopy revealed that PNT1 localizes to the kinetoplast, an organelle containing the mitochondrial genome of the parasite (kDNA), with an accumulation of the protein at or near the antipodal sites. Depletion of PNT1 by RNAi in the T. brucei bloodstream form was lethal both in in vitro culture and in vivo in mice and the induced population accumulated cells lacking a kinetoplast. In contrast, overexpression of PNT1 led to cells having mislocated kinetoplasts. RNAi depletion of PNT1 in a kDNA independent cell line resulted in kinetoplast loss but was viable, indicating that PNT1 is required exclusively for kinetoplast maintenance. Expression of a recoded wild-type PNT1 allele, but not of an active site mutant restored parasite viability after induction in vitro and in vivo confirming that the peptidase activity of PNT1 is essential for parasite survival. Furthermore, these data provide evidence that PNT1 is a cysteine peptidase that is required exclusively for maintenance of the trypanosome kinetoplast.

59 BASIC BIOLOGICAL SCIENCES↗

The Plasmodium falciparum exported protein PF3D7_0402000 binds to erythrocyte ankyrin and band 4.1

Plasmodium proteins are exported to the erythrocyte cytoplasm to create an environment that supports parasite replication. Although hundreds of proteins are predicted to be exported through PEXEL-dependent and -independent mechanisms, the functions of exported proteins are largely uncharacterized. In this study, we used a biochemical screening approach to identify exported P. falciparum proteins that bound to inside-out vesicles prepared from erythrocytes. Out of 70 exported P. falciparum proteins tested, 18 bound to IOVs in 2 or more independent assays. Using co-affinity purifications followed by mass spectrometry, pairwise co-purification experiments and the split-luciferase assay, we identified 31 putative protein-protein interactions between erythrocyte cytoskeletal proteins and exported P. falciparum proteins. We further showed that PF3D7_1401600 binds to the spectrin-binding domain of erythrocyte ankyrin via its MESA erythrocyte cytoskeleton binding (MEC) motif and to the N-terminal domains of ankyrin and 4.1R through a fragment that required an intact PHIST domain. Introduction of PF3D7_1401600 into erythrocyte ghosts increased retention in the microsphiltration assay, consistent with previous data that reported a reduction of rigidity in red blood cells infected with PF3D7_1401600-deficient parasites. Finally, we found that PfEPF3 proteins bound to erythrocyte GAPDH, providing a potential link between Maurer’s clefts and the erythrocyte cytoskeleton early during infection.

Shakya, Bikash↗

CO 2 rock physics modeling for reliable monitoring of geologic carbon storage

Monitoring, verification, and accounting (MVA) are crucial to ensure safe and long-term geologic carbon storage. Seismic monitoring is a key MVA technique that utilizes seismic data to infer elastic properties of CO 2 -saturated rocks. Reliable accounting of CO 2 in subsurface storage reservoirs and potential leakage zones requires an accurate rock physics model. However, the widely used CO 2 rock physics model based on the conventional Biot-Gassmann equation can substantially underestimate the influence of CO 2 saturation on seismic waves, leading to inaccurate accounting. We develop an accurate CO 2 rock physics model by accounting for both effects of the stress dependence of seismic velocities in porous rocks and CO 2 weakening on the rock framework. We validate our CO 2 rock physics model using the Kimberlina-1.2 model (a previously proposed geologic carbon storage site in California) and create time-lapse elastic property models with our new rock physics method. We compare the results with those obtained using the conventional Biot-Gassmann equation. Our innovative approach produces larger changes in elastic properties than the Biot-Gassmann results. Using our CO 2 rock physics model can replicate shear-wave speed reductions observed in the laboratory. Our rock physics model enhances the accuracy of time-lapse elastic-wave modeling and enables reliable CO 2 accounting using seismic monitoring.

58 GEOSCIENCES↗