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DOE OSTI2024

CHARM-SYCL & IRIS: A Tool Chain for Performance Portability on Extremely Heterogeneous Systems

Performance portability is becoming crucial as high-performance computing systems become increasingly heterogeneous. We have many options for CPUs and accelerators (e.g., GPUs) but also for non-Von Neumann architectures such as field-programmable gate arrays. This paper presents the CHARM-SYCL unified programming environment for multiple accelerator types as a performance-portable programming environment. It uses the IRIS library developed at Oak Ridge National Laboratory as the back end accelerator runtime. IRIS has a high-performance scheduler to distribute tasks across accelerators. This design allows us to run an application from the same source on multiple systems with multiple configurations. We provide three types of portability with CHARM-SYCL: Portable Workflow, Compiler and Runtime Portability, and Application and Performance Portability. We implement a Monte Carlo simulation benchmark code on the CHARM-SYCL execution environment and demonstrate that our programming environment can accommodate extremely heterogeneous systems.

Fujita, Norihisa↗

DOE OSTI2018

Carbon Capture Multidisciplinary Simulation CenterTrilab Support Team Fall Meeting 2018 Report

The TST continues to be very impressed with the quality of work presented and the rapid progress made by the CCMSC on a highly complex multiphysics problem domain. The Center is gathering increasing expertise and experience in multiple areas likely to be of broad interest to DOE and the greater HPC community, particularly in the areas of programming models and DSLs, I/O, V&V/UQ, and visualization/data analytics. This year in particular saw very impressive results in their task graph algorithms, strong and weak scaling of their overall code, and sophistication of their physics models and V/UQ analysis and approach. The team was particularly impressed with the depth of engagement and quality of discussion at the V/UQ deep dive. There are very few organizations outside of NNSA doing multiphysics simulation at this level of accuracy, efficiency, scale and sophistication and DOE would be well-advised to actively work to maintain a close collaborative relationship with this team after the completion of the PSAAP II program if at all possible.

20 FOSSIL-FUELED POWER PLANTS↗

DOE OSTI2015

Heterogenous Acceleration for Linear Algebra in Multi-coprocessor Environments

We present an efficient and scalable programming model for the development of linear algebra in heterogeneous multi-coprocessor environments. The model incorporates some of the current best design and implementation practices for the heterogeneous acceleration of dense linear algebra (DLA). Examples are given as the basis for solving linear systems' algorithms - the LU, QR, and Cholesky factorizations. To generate the extreme level of parallelism needed for the efficient use of coprocessors, algorithms of interest are redesigned and then split into well-chosen computational tasks. The tasks execution is scheduled over the computational components of a hybrid system of multi-core CPUs and coprocessors using a light-weight runtime system. The use of lightweight runtime systems keeps scheduling overhead low, while enabling the expression of parallelism through otherwise sequential code. This simplifies the development efforts and allows the exploration of the unique strengths of the various hardware components.

Luszczek, Piotr R↗

DOE OSTI2012

Evaluation of accuracy of calculations of VVER-1000 core states with incomplete covering of fuel by the absorber

An additional verification of bundled software (BS) SAPFIR-95 and amp;RC [1] and code KORSAR/GP [2] was performed. Both software products were developed in A.P. Alexandrov NITI and certified by ROSTEKHNADZOR of RF for numeric simulation of stationary, transitional and emergency conditions of VVER reactors. A benchmark model for neutronics calculations was created within the limits of this work. The cold subcritical state of VVER - 1000 reactor stationary fuelling was simulated on the basis of FA with an increased height of the fuel column (TVS-2M) considering detailed presentation of radial and front neutron reflectors. A case of passing of pure condensate slug through the core in initially deep subcritical state during start of the first RCP set after refueling was considered as an examined condition of reactor operation. A relatively small size of the slug, its spatial position near the reflectors (lower and lateral), as well as failure of the inserted control rods of the control and protection system (CPS CR) to reach the lower limit of the fuel column stipulate for methodical complexity of a correct calculation of the neutron multiplication constant (K{sub eff}) using engineering codes. Code RC was used as a test program in the process of reactor calculated 3-D modeling. Code MCNP5 [3] was used as the precision program, which solves the equation of neutrons transfer by Monte-Carlo method and which was developed in the US (Los-Alamos). As a result of comparative calculations dependency of K{sub eff} on two parameters was evaluated - boron acid concentration (Cb) and CPS CR position. Reactivity effect was evaluated, which is implemented as a result of failure of all CPS control rods to reach the lower fuel limit calculated using the engineering codes mentioned above. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

DOE OSTI2014

Performance Refactoring of Instrumentation, Measurement, and Analysis Technologies for Petascale Computing. The PRIMA Project

The growing number of cores provided by today’s high-end computing systems present substantial challenges to application developers in their pursuit of parallel efficiency. To find the most effective optimization strategy, application developers need insight into the runtime behavior of their code. The University of Oregon (UO) and the Juelich Supercomputing Centre of Forschungszentrum Juelich (FZJ) develop the performance analysis tools TAU and Scalasca, respectively, which allow high-performance computing (HPC) users to collect and analyze relevant performance data – even at very large scales. TAU and Scalasca are considered among the most advanced parallel performance systems available, and are used extensively across HPC centers in the U.S., Germany, and around the world. The TAU and Scalasca groups share a heritage of parallel performance tool research and partnership throughout the past fifteen years. Indeed, the close interactions of the two groups resulted in a cross-fertilization of tool ideas and technologies that pushed TAU and Scalasca to what they are today. It also produced two performance systems with an increasing degree of functional overlap. While each tool has its specific analysis focus, the tools were implementing measurement infrastructures that were substantially similar. Because each tool provides complementary performance analysis, sharing of measurement results is valuable to provide the user with more facets to understand performance behavior. However, each measurement system was producing performance data in different formats, requiring data interoperability tools to be created. A common measurement and instrumentation system was needed to more closely integrate TAU and Scalasca and to avoid the duplication of development and maintenance effort. The PRIMA (Performance Refactoring of Instrumentation, Measurement, and Analysis) project was proposed over three years ago as a joint international effort between UO and FZJ to accomplish these objectives: (1) refactor TAU and Scalasca performance system components for core code sharing and (2) integrate TAU and Scalasca functionality through data interfaces, formats, and utilities. As presented in this report, the project has completed these goals. In addition to shared technical advances, the groups have worked to engage with users through application performance engineering and tools training. In this regard, the project benefits from the close interactions the teams have with national laboratories in the United States and Germany. We have also sought to enhance our interactions through joint tutorials and outreach. UO has become a member of the Virtual Institute of High-Productivity Supercomputing (VI-HPS) established by the Helmholtz Association of German Research Centres as a center of excellence, focusing on HPC tools for diagnosing programming errors and optimizing performance. UO and FZJ have conducted several VI-HPS training activities together within the past three years.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2017

Light Water Reactor Sustainability Program External review of Risk Analysis and Virtual Environment (RAVEN) software for RISMC applications

The aim of this report is to describe the outcomes and findings of the review of the Risk Analysis and Virtual ENviroment (RAVEN) code performed by two external entities. In order to assess the code capabilities and maturity level from different prospective, a university (The Ohio State University) and a private company (FPoliSolutions LLC) have been identified for this review. These two groups provided an in-depth review of the RAVEN code – the resulting reviews were positive and included suggestions for potential enhancements to the code.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

DOE OSTI2023

Porting fragmentation methods to GPUs using an OpenMP API: Offloading the resolution-of-the-identity second-order Møller–Plesset perturbation method

Here, using an OpenMP Application Programming Interface, the resolution-of-the-identity second-order Møller–Plesset perturbation (RI-MP2) method has been off-loaded onto graphical processing units (GPUs), both as a standalone method in the GAMESS electronic structure program and as an electron correlation energy component in the effective fragment molecular orbital (EFMO) framework. First, a new scheme has been proposed to maximize data digestion on GPUs that subsequently linearizes data transfer from central processing units (CPUs) to GPUs. Second, the GAMESS Fortran code has been interfaced with GPU numerical libraries (e.g., NVIDIA cuBLAS and cuSOLVER) for efficient matrix operations (e.g., matrix multiplication, matrix decomposition, and matrix inversion). The standalone GPU RI-MP2 code shows an increasing speedup of up to 7.5× using one NVIDIA V100 GPU with one IBM 42-core P9 CPU for calculations on fullerenes of increasing size from 40 to 260 carbon atoms using the 6-31G(d)/cc-pVDZ-RI basis sets. A single Summit node with six V100s can compute the RI-MP2 correlation energy of a cluster of 175 water molecules using the correlation consistent basis sets cc-pVDZ/cc-pVDZ-RI containing 4375 atomic orbitals and 14 700 auxiliary basis functions in ~0.85 h. In the EFMO framework, the GPU RI-MP2 component shows near linear scaling for a large number of V100s when computing the energy of an 1800-atom mesoporous silica nanoparticle in a bath of 4000 water molecules. The parallel efficiencies of the GPU RI-MP2 component with 2304 and 4608 V100s are 98.0% and 96.1%, respectively.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2021

Diffraction properties of cylindrically bent KAP crystals in energy range of 2.3–7.5 keV using synchrotron radiation

Verification of physics models and computer simulations are heavily reliant upon the accuracy of experimental measurements. Calibration of instrument responses becomes an important step to achieve this goal. This paper presents systematic studies of bent potassium acid phthalate (KAP) crystals using Lawrence Berkeley National Laboratories, Advanced Light Source, beamline 9.3.1 in the energy range of 2.3 to 7.5 keV. A set of KAP crystals, gradually bent from flat up to a 50.8 mm cylindrical curvature. The measured integrated reflectivity for this set of KAP crystals shows good agreement with the X-ray Oriented Program (XOP) calculations when adjusting the Debye–Waller temperature factor and using the multilamellar model in the calculations. Significant differences in rocking curve profiles were observed between experimental measurements and theory. A forward convolution model and software code were developed to include experimental parameters, allowing the investigation of the difference between measurements and calculations. After considering the experimental parameters, good agreements were obtained for the rocking curve profiles for all bending radii with a unique set of parameters. Our results show that XOP can be a useful and reliable tool to predict performance of cylindrically bent KAP crystals in this energy range.

Wu, Ming↗

DOE OSTI2011

Framework Application for Core Edge Transport Simulation (FACETS)

The FACETS (Framework Application for Core-Edge Transport Simulations) project of Scientific Discovery through Advanced Computing (SciDAC) Program was aimed at providing a high-fidelity whole-tokamak modeling for the U.S. magnetic fusion energy program and ITER through coupling separate components for each of the core region, edge region, and wall, with realistic plasma particles and power sources and turbulent transport simulation. The project also aimed at developing advanced numerical algorithms, efficient implicit coupling methods, and software tools utilizing the leadership class computing facilities under Advanced Scientific Computing Research (ASCR). The FACETS project was conducted by a multi-discipline, multi-institutional teams, the Lead PI was J.R. Cary (Tech-X Corp.). In the FACETS project, the Applied Plasma Theory Group at the MAE Department of UCSD developed the Wall and Plasma-Surface Interaction (WALLPSI) module, performed its validation against experimental data, and integrated it into the developed framework. WALLPSI is a one-dimensional, coarse grained, reaction/advection/diffusion code applied to each material boundary cell in the common modeling domain for a tokamak. It incorporates an advanced model for plasma particle transport and retention in the solid matter of plasma facing components, simulation of plasma heat power load handling, calculation of erosion/deposition, and simulation of synergistic effects in strong plasma-wall coupling.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2014

(U) Computation acceleration using dynamic memory

Many computational applications require the repeated use of quantities, whose calculations can be expensive. In order to speed up the overall execution of the program, it is often advantageous to replace computation with extra memory usage. In this approach, computed values are stored and then, when they are needed again, they are quickly retrieved from memory rather than being calculated again at great cost. Sometimes, however, the precise amount of memory needed to store such a collection is not known in advance, and only emerges in the course of running the calculation. One problem accompanying such a situation is wasted memory space in overdimensioned (and possibly sparse) arrays. Another issue is the overhead of copying existing values to a new, larger memory space, if the original allocation turns out to be insufficient. In order to handle these runtime problems, the programmer therefore has the extra task of addressing them in the code.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2020

BISON Robustness and Performance Improvements

BISON is a modern finite-element based nuclear fuel performance code that has been under development at the Idaho National Laboratory (USA) since 2009 [1]. The code is applicable to both steady and transient fuel behavior and can be used to analyze 1D (spherically symmetric), 2D (axisymmetric and generalized plane strain) or 3D geometries. BISON is the fuel performance code used within CASL for LWR fuel under both normal operating and accident conditions. BISON is built using the INL Multiphysics ObjectOriented Simulation Environment, or MOOSE [2, 3]. MOOSE is a massively parallel, finite element-based framework to solve systems of coupled non-linear partial differential equations using the Jacobian-Free Newton Krylov (JFNK) method [4]. This enables investigation of computationally large problems, for example a full stack of discrete pellets in a LWR fuel rod, or every rod in a full reactor core. MOOSE supports the use of complex two and three-dimensional meshes and uses implicit time integration, important for the widely varied time scale in nuclear fuel simulation. An object-oriented architecture is employed which greatly minimizes the programming effort required to add new material and behavioral models. The flexibility of the implicit and fully coupled multiphysics approach comes with a need for constructing suitable approximations for the Jacobian matrix of the coupled system used for either preconditioning a Krylov solve or in a direct Newton solve. Preconditioning options for Bison problems need to be revisited with new preconditioning methods becoming available.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

DOE OSTI2015

Ordering Traces Logically to Identify Lateness in Message Passing Programs

Event traces are valuable for understanding the behavior of parallel programs. However, automatically analyzing a large parallel trace is difficult, especially without a specific objective. We aid this endeavor by extracting a trace's logical structure, an ordering of trace events derived from happened-before relationships, while taking into account developer intent. Using this structure, we can calculate an operation's delay relative to its peers on other processes. The logical structure also serves as a platform for comparing and clustering processes as well as highlighting communication patterns in a trace visualization. We present an algorithm for determining this idealized logical structure from traces of message passing programs, and we develop metrics to quantify delays and differences among processes. We implement our techniques in Ravel, a parallel trace visualization tool that displays both logical and physical timelines. Rather than showing the duration of each operation, we display where delays begin and end, and how they propagate. As a result, we apply our approach to the traces of several message passing applications, demonstrating the accuracy of our extracted structure and its utility in analyzing these codes.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2019

REBUS-PC v1.5 Verification Test Summary

Motivated in part by its usage for analysis of the University of Missouri Research Reactor (MURR), the verification of the REBUS-PC software for θ-R-Z geometries is discussed and displayed in this manuscript. Of particular importance is to show that the eigenvalue, flux, power, and burnup outputs of the software given a user problem is correct. REBUS-PC contains many features and MURR only makes use of some of those aspects. As an example, the use of region specific cross section sets, interpolation of the cross section data with respect to burnup, and automatic movement of control rods during the fuel cycle is discussed and displayed. To demonstrate the accuracy, 22 verification tests based upon 7 physical geometries are discussed. Geometry descriptions are provided in Section 2 and the REBUS-PC results for each verification test are discussed in Section 3. These verification tests consist of both analytic problems with known solutions and a more complicated input consistent with usage of REBUS-PC on the MURR reactor itself called STRZ. In this verification test summary report, the REBUS-PC software is repeatedly demonstrated to reproduce, or closely match, the eigenvalue, flux, and power distributions from analytic test problem solutions, demonstrating that the implemented finite difference approximation in θ-R-Z is working as intended. Several additional REBUS-PC features are tested, such as control rod movement by detailed comparisons of the results against reference solutions obtained using an auxiliary implemented MatLab program. As expected, the REBUS-PC software produces results that are 100% consistent with the stated capabilities and thus the verification exercise is completed. These verification tests should be executed with each re-compilation of the REBUS-PC source and after any source code changes. All output results from any such new work should be rigorously compared against the stored output of the 22 verification tests cited in this report that forms the basis of the verification process.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2012

A reactor core on-line monitoring program - COMP

A program named COMP is developed for on-line monitoring PWRs' in-core power distribution in this paper. Harmonics expansion method is used in COMP. The Unit 1 reactor of Daya Bay Nuclear Power Plant (Daya Bay NPP) in China is considered for verification. The numerical results show that the maximum relative error between measurement and reconstruction results from COMP is less than 5%, and the computing time is short, indicating that COMP is capable for online monitoring PWRs. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

DOE OSTI2012

PHISICS toolkit: Multi-reactor transmutation analysis utility - MRTAU

The principal idea of this paper is to present the new capabilities available in the PHISICS toolkit, connected with the implementation of the depletion code MRTAU, a generic depletion/decay/burn-up code developed at the Idaho National Laboratory. It is programmed in a modular structure and modern FORTRAN 95/2003. The code tracks the time evolution of the isotopic concentration of a given material accounting for nuclear reactions happening in presence of neutron flux and also due to natural decay. MRTAU has two different methods to perform the depletion calculation, in order to let the user choose the best on with respect to his needs. Both the methodologies and some significant results are reported in this paper. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2020

An Energy Calculator for Simple Commercial Buildings

According to the EIA, simple commercial buildings account for 97% of total commercial building stock. However, most simple commercial buildings for example small- to mid-sized offices, retail, schools and warehouses do not benefit from the data-driven decision-making capabilities of whole-building energy modeling. The high cost of custom modeling limits the use of energy modeling of simple buildings for new construction or retrofit measures. Lack of tools providing helpful information on interactive savings estimates creates difficulties in meeting aggressive decarbonization and energy efficiency goals for simple building designers and utility program managers. This paper reviews a beta phase Simple Building Calculator with the ability to generate relatively accurate and interactive modeling results based on a limited but robust set of inputs. It can evaluate whole-building or single measure savings in new or existing buildings, compare measure package choices, or provide simplified performance modeling for energy codes and utility incentives. The tool combines physical (annual whole building prototype simulation) and statistical modeling techniques to predict annual energy performance. It supports a variety of building characteristics for envelope, HVAC, and lighting with parameters ranging from vintage to max tech configurations, as well as support for single-zone and simple multi-zone HVAC systems. The Simple Building Calculator was designed to provide immediate feedback for otherwise computationally intensive tasks like measure comparison, development of multiple measure package combinations, or verification that measures meet efficiency targets—all with the goal of providing a tool for quick annual energy simulation of simple commercial buildings.

Hart, Reid↗

DOE OSTI2023

A User Guide to PARET/ANL

PARET was originally created in 1969 at what is now Idaho National Laboratory (INL), to analyze reactivity insertion events in research and test reactor cores cooled by light or heavy water, with fuel composed of either plates or pins. The use of PARET is also appropriate for fuel assemblies with curved fuel plates when their radii of curvatures are large with respect to the fuel plate thickness. The PARET/ANL version of the code has been developed at Argonne National Laboratory (ANL) under the sponsorship of the U.S. Department of Energy/NNSA since the inception of the Reactor Conversion Program. Since Reduced Enrichment for Research and Test Reactors (RERTR) began in 1978, PARET/ANL has been benchmarked to experimental data including SPERT testing, and used to determine the expected transient behavior of many reactors both inside and outside the Reactor Conversion Program. This document provides the pertinent information for the use of PARET/ANL Version 7.6.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

DOE OSTI2016

Poster - 27: Incident Learning Practices in Ontario

Purpose: The Radiation Incident and Safety Committee (RISC), established and supported by Cancer Care Ontario (CCO), is responsible for advising the Provincial Head of the Radiation Treatment program on matters relating to provincial reporting of radiation incidents with the goal of improved risk mitigation. Methods: The committee is made up of Radiation Incident Leads (RILs) with representation from each of the 14 radiation medicine programs in the province. RISC routinely meets to review recent critical incidents and to discuss provincial reporting processes and future directions of the committee. Regular face to face meetings have provided an excellent venue for sharing incident learning practices. A summary of the incident learning practices across Ontario has been compiled. Results: Almost all programs in Ontario employ an incident learning committee to review incidents and identify corrective actions or process improvements. Tools used for incident reporting include: paper based reporting, a number of different commercial products and software solutions developed in-house. A wide range of classification schema (data taxonomies) are employed, although most have been influenced by national guidance documents. The majority of clinics perform root cause analyses but utilized methodologies vary significantly. Conclusions: Most programs in Ontario employ a committee approach to incident learning. However, the reporting tools and taxonomies in use vary greatly which represents a significant challenge to provincial reporting. RISC is preparing to adopt the National System for Incident Reporting – Radiation Therapy (NSIR-RT) which will standardize incident reporting and facilitate data analyses aimed at identifying targeted improvement initiatives.

60 APPLIED LIFE SCIENCES↗