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At least 1,549 records · Page 86

Benchmarking the performance of uncertainty quantification methods for neural network-based interatomic potentials

Machine-learned interatomic potentials (ML-IAPs) continue to gain popularity as accurate, computationally efficient replacements for traditional, physics-based interatomic potentials and expensive ab initio methods. Uncertainty quantification (UQ) of ML-IAPs is a growing area of research as UQ is critical in many applications of IAPs, such as developing curated datasets, active learning-based data augmentation, self-improving models, and estimating the uncertainty of molecular dynamics simulations. In this paper, we construct and benchmark a series of different neural network potentials (NNPs) with varying network architectures to determine the performance of these models with respect to both the mean and uncertainty calibration error. Each NNP method is specifically designed to predict either epistemic or aleatoric uncertainty with particular focus on the differences in behavior between the epistemic and aleatoric uncertainty estimates. We benchmark these methods using multiple datasets common in the ML-IAP literature. The results show that the aleatoric uncertainty from single-shot model architectures is a competitive alternative to ensemble-based epistemic uncertainty predictions in regions of sufficient data-density. However, in regions where the representative data is sparse, aleatoric uncertainty models tend to overpredict and epistemic methods tend to underpredict the actual model error. We conclude that the type of UQ is crucial when discussing performance of probabilistic model results as different methods have different performance characteristics depending on the regime in which they are evaluated. Therefore, the type of UQ method should be carefully evaluated against both the data characteristics and requirements for the intended application.

97 MATHEMATICS AND COMPUTING↗

Role of the BIPM in UTC Dissemination to the Real Time User

The generation and dissemination of International Atomic Time (TAI), and Coordinated Universal Time (UTC) are explicitly mentioned in the list of principal tasks of the Bureau International des Poids et Mesures (BIPM), that appears in the Compes Rendus of the the 18e Conference Generales des Poids et Measures, in 1987. These time scales are used as the ultimate reference in the most demanding scientific applications and must, therefore, be of the best metrological quality in terms of reliability, long term stability, and conformity of the scale interval with the second, the unit of time of the International System of Units. To meet these requirements, it is necessary that the readings of the atomic clocks, spread all over the world, that are used as basic timing data for TAI and UTC generation, must be combined in the most efficient way possible. In particular, to take full advantage of the quality of each contributing clock calls for observation of its performance over a sufficiently long time. At present, the computation period treats data in blocks covering two months. TAI and UTC are thus deferred-time scales that cannot be immediately available to real-time users. The BIPM can, nevertheless be of help to real-time users. The predictability of UTC is a fundamental attribute of the scale for institutions responsible for the dissemination of real-time time scales. It allows them to improve their local representations of UTC and, thus, implement a more thorough steering of the time scales diffused in real-time. With a view to improving the predicatbility of UTC, the BIPM examines in detail timing techniques and basic theories in order to propose alternative solutions for timing algorithms. This, coupled with a recent improvement of timing data, makes UTC more stable and thus, more predictable. At a more practical level, effort is being devoted to putting in place automatic procedures for reducing the time needed for data collection and treatment: monthly results are already available ten days earlier than before.

Quinn, T. J.↗

Synthesis of dysprosium oxychloride (DyOCl)

Dysprosium oxychloride, DyOCl, was synthesized using a simple dehydration method with DyCl3·6H2O. X-ray powder diffraction data was used to determine the crystal structure. The DyOCl compound is isostructural to the matlockite (PbFCl) crystal structure and crystallizes in the tetragonal P4/nmm (#129) space group. The crystal structure contains the alternating cationic layers of (DyO)n and anionic layers of nCl– along the c-axis. The structural data including unit cell, volume, and density of DyOCl were compared to other REOCl data from Inorganic Crystal Structure Database (ICSD) and our previous study on TbOCl. Fourier-transform infrared spectroscopy (FTIR) was performed, and the vibrations of DyOCl possibly from Dy–O and Dy–Cl were observed at 543 and 744 cm-1. Scanning electron microscopy analysis (SEM) showed irregularly shaped crystals.

Chong, Saehwa↗

Data center growth in the United States: Decoupling the demand for services from electricity use

Data centers are energy intensive buildings that have grown in size and number to meet the increasing demands of a digital economy. This paper presents a bottom-up model to estimate data center electricity demand in the United States over a 20 year period and examines observed and projected electricity use trends in the context of changing data center operations. Results indicate a rapidly increasing electricity demand at the turn of the century that has significantly subsided to a nearly steady annual electricity use of about 70 billion kWh in recent years. While data center workloads continue to grow exponentially, comparable increases in electricity demand have been avoided through the adoption of key energy efficiency measures and a shift towards large cloud-based service providers. Alternative projections from the model illustrate the wide range in potential electricity that could be consumed to support data centers, with the US data center workload demand estimated for 2020 requiring a total electricity use that varies by about 135 billion kWh, depending on the adoption rate of efficiency measures during this decade. While recent improvements in data center energy efficiency have been a success, the growth of data center electricity use beyond 2020 is uncertain, as modeled trends indicate that the efficiency measures of the past may not be enough for the data center workloads of the future. The results show that successful stabilization of data center electricity will require new innovations in data center efficiency to further decouple electricity demand from the ever-growing demand for data center services.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Aqueous sodium chloride induced intergranular corrosion of Al-Li-Cu alloys

Two methods have been explored to assess the susceptibility of Al-Li-Cu alloys to intergranular corrosion in aqueous sodium chloride solution. They are: (1) constant extension rate testing with and without alternate-immersion preexposure and (2) metallographic examination after exposure to a NaCl-H2O2 corrosive solution per Mil-H-6088F. Intergranular corrosion was found to occur in both powder and ingot metallurgy alloys of similar composition, using both methods. Underaging rendered the alloys most susceptible. The results correlate to stress-corrosion data generated in conventional time-to-failure and crack growth-rate tests. Alternate-immersion preexposure may be a reliable means to assess stress corrosion susceptibility of Al-Li-Cu alloys.

Pizzo, P. P.↗

Onboard Signal Processing: Wave of the Future for Planetary Radio Science?

Future spacecraft-based radio observations of planetary surfaces, rings, and atmospheres could significantly benefit from recent technological advances in real-time digital signal processing (DSP) hardware. Traditionally, the radio observations have been carried out in a 'down link' configuration in which about 20-W spacecraft transmitted RF power illuminates the target of interest and the perturbed signal is collected at an Earth receiving station. The down link configuration was dictated by the large throughput of received data, corresponding to a relatively large recording band width (about 50 kHz) needed to capture the coherent and scattered signal components in the presence of trajectory, ephemeris, and measurement uncertainties. An alternative 'up link' configuration in which powerful Earth-based radio transmitters (20-200 kW) are used to illuminate the target and data are recorded on board a spacecraft could enhance the measurements' signal-to-noise ratio by a factor of about 1000, allowing a quantum leap in scientific capabilities. Various aspects of alternative signal processing technologies are discussed.

Marouf, E. A.↗

Optimally placing photovoltaic arrays to maximize value of energy production based on peak power production, local solar radiation, weather, electricity market prices and rate structures

A method, system and computer program product for optimally placing photovoltaic arrays to maximize a value of energy production. Incident solar radiation for various placements of the photovoltaic arrays accommodating different azimuths and tilts is calculated. Alternating current solar photovoltaic electricity energy and power production is then estimated from the calculated solar radiation on a plane and weather data. Furthermore, a value of solar photovoltaic electricity energy and power produced by the photovoltaic arrays for the various placements is calculating using the estimated alternating current solar photovoltaic electricity production. A placement out of the various placements for the photovoltaic arrays is then selected corresponding to a highest value of the solar photovoltaic electricity produced by the photovoltaic arrays. In this manner, the appropriate placement for the photovoltaic arrays is determined that maximizes the value of energy production (where “value” may correspond to an economic value or a non-economic value).

Webber, Michael E.↗

Determination of the scalar polarizabilities of the proton using beam asymmetry $\Sigma_{3}$ in Compton scattering

The scalar dipole polarizabilities, α E1 and β M1 , are fundamental properties related to the internal dynamics of the nucleon. The currently accepted values of the proton polarizabilities were determined by fitting to unpolarized proton Compton scattering cross section data. The measurement of the beam asymmetry Σ 3 in a certain kinematical range provides an alternative approach to the extraction of the scalar polarizabilities. At the Mainz Microtron (MAMI) the beam asymmetry was measured for Compton scattering below pion photoproduction threshold for the first time. Finally, the results are compared with model calculations and the influence of the experimental data on the extraction of the scalar polarizabilities is determined.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Diagnostic tolerance for missing sensor data

For practical automated diagnostic systems to continue functioning after failure, they must not only be able to diagnose sensor failures but also be able to tolerate the absence of data from the faulty sensors. It is shown that conventional (associational) diagnostic methods will have combinatoric problems when trying to isolate faulty sensors, even if they adequately diagnose other components. Moreover, attempts to extend the operation of diagnostic capability past sensor failure will necessarily compound those difficulties. Model-based reasoning offers a structured alternative that has no special problems diagnosing faulty sensors and can operate gracefully when sensor data is missing.

Scarl, Ethan A.↗

Prototype and Metrics for Data Processing Chain Components of IPM

This presentation lays out the evolution of the Intelligent Payload Module (IPM) vision given that the HyspIRI mission has been delayed. It shows that there has been a focus on airborne vehcile and unmanned aerial systems to further develop the IPM functionality. This of course does not preclude use of the IPM for space missions but provides alternate paths to continue the concept of improved onboard processing for low latency users of science data products.

Prototype and Metrics for Data Processing Chain Components of IPM

This presentation lays out the evolution of the Intelligent Payload Module (IPM) vision given that the HyspIRI mission has been delayed. It shows that there has been a focus on airborne vehcile and unmanned aerial systems to further develop the IPM functionality. This of course does not preclude use of the IPM for space missions but provides alternate paths to continue the concept of improved onboard processing for low latency users of science data products.

Onboard Processing↗

Study of advanced rotary combustion engines for commuter aircraft

Performance, weight, size, and maintenance data for advanced rotary aircraft engines suitable for comparative commuter aircraft system evaluation studies of alternate engine candidates are provided. These are turbocharged, turbocompounded, direct injected, stratified charge rotary engines. Hypothetical engines were defined (an RC4-74 at 895 kW and an RC6-87 at 1490 kW) based on the technologies and design approaches used in the highly advanced engine of a study of advanced general aviation rotary engines. The data covers the size range of shaft power from 597 kW (800 hp) to 1865 kW (2500 hp) and is in the form of drawings, tables, curves and written text. These include data on internal geometry and configuration, installation information, turbocharging and turbocompounding arrangements, design features and technologies, engine cooling, fuels, scaling for weight size BSFC and heat rejection for varying horsepower, engine operating and performance data, and TBO and maintenance requirements. The basic combustion system was developed and demonstrated; however the projected power densities and performance efficiencies require increases in engine internal pressures, thermal loading, and rotative speed.

Berkowitz, M.↗

Data Assimilation of Photosynthetic Light-use Efficiency using Multi-angular Satellite Data: II Model Implementation and Validation

Spatially explicit and temporally continuous estimates of photosynthesis will be of great importance for increasing our understanding of and ultimately closing the terrestrial carbon cycle. Current capabilities to model photosynthesis, however, are limited by accurate enough representations of the complexity of the underlying biochemical processes and the numerous environmental constraints imposed upon plant primary production. A potentially powerful alternative to model photosynthesis through these indirect observations is the use of multi-angular satellite data to infer light-use efficiency (ε) directly from spectral reflectance properties in connection with canopy shadow fractions. Hall et al. (this issue) introduced a new approach for predicting gross ecosystem production that would allow the use of such observations in a data assimilation mode to obtain spatially explicit variations in ε from infrequent polar-orbiting satellite observations, while meteorological data are used to account for the more dynamic responses of ε to variations in environmental conditions caused by changes in weather and illumination. In this second part of the study we implement and validate the approach of Hall et al. (this issue) across an ecologically diverse array of eight flux-tower sites in North America using data acquired from the Compact High Resolution Imaging Spectroradiometer (CHRIS) and eddy-flux observations. Our results show significantly enhanced estimates of ε and therefore cumulative gross ecosystem production (GEP) over the course of one year at all examined sites. We also demonstrate that ε is greatly heterogeneous even across small study areas. Data assimilation and direct inference of GEP from space using a new, proposed sensor could therefore be a significant step towards closing the terrestrial carbon cycle.

Hilker, Thomas↗

MPI-FAUN: An MPI-Based Framework for Alternating-Updating Nonnegative Matrix Factorization

Non-negative matrix factorization (NMF) is the problem of determining two non-negative low rank factors W and H, for the given input matrix A, such that A≈WH. NMF is a useful tool for many applications in different domains such as topic modeling in text mining, background separation in video analysis, and community detection in social networks. Despite its popularity in the data mining community, there is a lack of efficient parallel algorithms to solve the problem for big data sets. The main contribution of this work is a new, high-performance parallel computational framework for a broad class of NMF algorithms that iteratively solves alternating non-negative least squares (NLS) subproblems for W and H. It maintains the data and factor matrices in memory (distributed across processors), uses MPI for interprocessor communication, and, in the dense case, provably minimizes communication costs (under mild assumptions). The framework is flexible and able to leverage a variety of NMF and NLS algorithms, including Multiplicative Update, Hierarchical Alternating Least Squares, and Block Principal Pivoting. Our implementation allows us to benchmark and compare different algorithms on massive dense and sparse data matrices of size that spans from few hundreds of millions to billions. We demonstrate the scalability of our algorithm and compare it with baseline implementations, showing significant performance improvements. The code and the datasets used for conducting the experiments are available online.

2D↗

A robust prognostic signature for hormone-positive node-negative breast cancer

Background: Systemic chemotherapy in the adjuvant setting can cure breast cancer in some patients that would otherwise recur with incurable, metastatic disease. However, since only a fraction of patients would have recurrence after surgery alone, the challenge is to stratify high-risk patients (who stand to benefit from systemic chemotherapy) from low-risk patients (who can safely be spared treatment related toxicities and costs). Methods: We focus here on risk stratification in node-negative, ER-positive, HER2-negative breast cancer. We use a large database of publicly available microarray datasets to build a random forests classifier and develop a robust multi-gene mRNA transcription-based predictor of relapse free survival at 10 years, which we call the Random Forests Relapse Score (RFRS). Performance was assessed by internal cross-validation, multiple independent data sets, and comparison to existing algorithms using receiver-operating characteristic and Kaplan-Meier survival analysis. Internal redundancy of features was determined using k-means clustering to define optimal signatures with smaller numbers of primary genes, each with multiple alternates. Results: Internal OOB cross-validation for the initial (full-gene-set) model on training data reported an ROC AUC of 0.704, which was comparable to or better than those reported previously or obtained by applying existing methods to our dataset. Three risk groups with probability cutoffs for low, intermediate, and high-risk were defined. Survival analysis determined a highly significant difference in relapse rate between these risk groups. Validation of the models against independent test datasets showed highly similar results. Smaller 17-gene and 8-gene optimized models were also developed with minimal reduction in performance. Furthermore, the signature was shown to be almost equally effective on both hormone-treated and untreated patients. Conclusions: RFRS allows flexibility in both the number and identity of genes utilized from thousands to as few as 17 or eight genes, each with multiple alternatives. The RFRS reports a probability score strongly correlated with risk of relapse. This score could therefore be used to assign systemic chemotherapy specifically to those high-risk patients most likely to benefit from further treatment.

59 BASIC BIOLOGICAL SCIENCES↗

Analysis of Historical International Space Station Logistical Mass Delivery

Crewed space exploration missions are extremely logistics dependent, as cargo requirements shape numerous program elements such as vehicle and habitat size. Logistics mass is the mass of items like food and clothing that are not a part of the vehicle or habitat, yet are required by the crew to complete the mission. Numerous studies, such as the Human Exploration Research Analog (HERA) and the Human Exploration Spacecraft Testbed for Integration and Advancement (HESTIA) 20-foot chamber analog, have been conceived to research the rates at which crews consume logistics mass. These analogs can simulate many aspects of life in space, including confinement, isolation, limited supplies, and, in certain experiments, the habitat pressure. However, some aspects of space exploration, such as the effects of low gravity and the use of space-based amenities, cannot currently be tested on the ground. In this paper, International Space Station (ISS) manifest data obtained through the National Aeronautics and Space Administration’s (NASA’s) Mission Integration Database Application System (MIDAS) portal is used as a precursor to space-based analogs. The objective of the analysis is determining the breakdown of logistics mass used in space exploration. This identifies potential areas of improvement and highlights the rates at which significant items are supplied, aiding in the weighing of alternative options such as utilizing in space manufacturing for supplies vs. manifesting spares, or cleaning clothing in flight vs. discarding it. Official flight manifests ranging a span of 878 days, just short of the three-year length of a potential human mission to Mars, were analyzed to find the rates at which astronauts consumed various logistics supplies. From this analysis we have found that contrary to our own hypothesis, ‘food’ was not the largest portion of the supplied mass. Instead, ‘Environmental Control and Life Support Systems’ (ECLSS) contributed 34% of the overall supplied mass, followed by ‘Science and Outfitting,’ which contributed 29%. Food totaled less than a quarter (21% of the resupplied mass, while other items of focus in mass reduction efforts such as ‘Hygiene’ (6%), ‘Clothing’ (3%), and ‘Operational Supplies’ (4%) each contributed less than a tenth of the supplied mass. This data suggests that by categorizing and analyzing the data based on an alternative taxonomy and analyzing the full supply manifests rather than handpicked items, we have revealed unexpectedly significant items which had not been previously tracked by exploration logistics efforts. For example, toilet hardware made up 4% of ECLSS mass, and laptop hardware and multi-tools each made up 10% of operational supplies mass. Additionally, the ‘Specialized Clothing’ subcategory containing fire protective equipment, coveralls, and penguin suits made up 15% of the overall clothing mass. By identifying these newly found significant items, we can create more realistic mass estimates for exploration missions and direct mass reduction efforts to new areas, potentially leading to lower future mission masses.

Logistics↗

Discussion on “Saving Storage in Climate Ensembles: A Model-Based Stochastic Approach”

Abstract We thank the authors for this interesting paper that highlights important ideas and concepts for the future of climate model ensembles and their storage, as well as future uses of stochastic emulators. Stochastic emulators are particularly relevant because of the statistical nature of climate model ensembles, as discussed in previous work of the authors (Castruccio et al. in J Clim 32:8511–8522, 2019; Hu and Castruccio in J Clim 34:8409–8418, 2021). We thank the authors for sharing of some of their data with us in order to illustrate this discussion. In the following, in Sect. 1 we discuss alternative techniques currently used and studied, namely lossy compression and ideas emerging from the climate modeling community, that could feed the discussion on ensemble and storage. In that section, we also present numerical results of compression performed on the data shared by the authors. In Sect. 2, we discuss the current statistical model proposed by the authors and its context. We discuss other potential uses of stochastic emulators in climate and Earth modeling.

97 MATHEMATICS AND COMPUTING↗